From 1a1e95a906bdd6cbce936abcb6a6fe294ac09a88 Mon Sep 17 00:00:00 2001
From: dcarron <daniel.carron@idiap.ch>
Date: Tue, 28 May 2024 16:05:24 +0200
Subject: [PATCH] [database] Rename split to fold
---
.../libs/classification/scripts/database.py | 6 +++---
src/mednet/libs/common/scripts/database.py | 16 ++++++++--------
src/mednet/libs/segmentation/scripts/database.py | 8 ++++----
3 files changed, 15 insertions(+), 15 deletions(-)
diff --git a/src/mednet/libs/classification/scripts/database.py b/src/mednet/libs/classification/scripts/database.py
index b76f2e69..038270d7 100644
--- a/src/mednet/libs/classification/scripts/database.py
+++ b/src/mednet/libs/classification/scripts/database.py
@@ -112,7 +112,7 @@ def list_():
""",
)
@click.argument(
- "split",
+ "fold",
nargs=1,
)
@click.option(
@@ -125,6 +125,6 @@ def list_():
default=0,
)
@verbosity_option(logger=logger, expose_value=False)
-def check(split, limit): # numpydoc ignore=PR01
+def check(fold, limit): # numpydoc ignore=PR01
"""Check file access on one or more DataModules."""
- check_("mednet.libs.classification.config", split, limit)
+ check_("mednet.libs.classification.config", fold, limit)
diff --git a/src/mednet/libs/common/scripts/database.py b/src/mednet/libs/common/scripts/database.py
index 755e6afd..63f1dde1 100644
--- a/src/mednet/libs/common/scripts/database.py
+++ b/src/mednet/libs/common/scripts/database.py
@@ -35,18 +35,18 @@ def list_(config: dict[str, dict[str, str]]) -> None:
click.echo(f'- {k} ({v["module"]}): NOT installed')
-def check(entry_point_group, split, limit): # numpydoc ignore=PR01
+def check(entry_point_group, fold, limit): # numpydoc ignore=PR01
"""Check file access on one or more DataModules."""
import importlib.metadata
import sys
- click.secho(f"Checking split `{split}`...", fg="yellow")
+ click.secho(f"Checking fold `{fold}`...", fg="yellow")
try:
module = importlib.metadata.entry_points(group=entry_point_group)[
- split
+ fold
].module
except KeyError:
- raise Exception(f"Could not find database split `{split}`")
+ raise Exception(f"Could not find database fold `{fold}`")
datamodule = importlib.import_module(module).datamodule
@@ -60,14 +60,14 @@ def check(entry_point_group, split, limit): # numpydoc ignore=PR01
for k, loader in loaders.items():
if limit == 0:
click.secho(
- f"Checking all samples of dataset `{k}` at split `{split}`...",
+ f"Checking all samples of dataset `{k}` at fold `{fold}`...",
fg="yellow",
)
loader_limit = sys.maxsize
else:
click.secho(
f"Checking first {limit} samples of dataset "
- f"`{k}` at split `{split}`...",
+ f"`{k}` at fold `{fold}`...",
fg="yellow",
)
loader_limit = limit
@@ -88,11 +88,11 @@ def check(entry_point_group, split, limit): # numpydoc ignore=PR01
if not errors:
click.secho(
- f"OK! No errors were reported for database split `{split}`.",
+ f"OK! No errors were reported for database fold `{fold}`.",
fg="green",
)
else:
click.secho(
- f"Found {errors} errors loading DataModule `{split}`.",
+ f"Found {errors} errors loading DataModule `{fold}`.",
fg="red",
)
diff --git a/src/mednet/libs/segmentation/scripts/database.py b/src/mednet/libs/segmentation/scripts/database.py
index 2d89b4f5..a58bea03 100644
--- a/src/mednet/libs/segmentation/scripts/database.py
+++ b/src/mednet/libs/segmentation/scripts/database.py
@@ -101,7 +101,7 @@ def list_():
@database.command(
epilog="""Examples:
- 1. Check if all files from the split 'montgomery-f0' of the Montgomery
+ 1. Check if all files from the fold 'montgomery-f0' of the Montgomery
database can be loaded:
.. code:: sh
@@ -111,7 +111,7 @@ def list_():
""",
)
@click.argument(
- "split",
+ "fold",
nargs=1,
)
@click.option(
@@ -124,6 +124,6 @@ def list_():
default=0,
)
@verbosity_option(logger=logger, expose_value=False)
-def check(split, limit): # numpydoc ignore=PR01
+def check(fold, limit): # numpydoc ignore=PR01
"""Check file access on one or more DataModules."""
- check_("mednet.libs.segmentation.config", split, limit)
+ check_("mednet.libs.segmentation.config", fold, limit)
--
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