From 091a947adeecde4d7d587b35fb854bb6fe9ba56d Mon Sep 17 00:00:00 2001
From: dcarron <daniel.carron@idiap.ch>
Date: Fri, 14 Jun 2024 18:00:13 +0200
Subject: [PATCH] [mednet.info] More sensible check of configuration file
---
src/mednet/scripts/info.py | 30 ++++++++++++++++--------------
1 file changed, 16 insertions(+), 14 deletions(-)
diff --git a/src/mednet/scripts/info.py b/src/mednet/scripts/info.py
index 4ad4f516..620e1a9d 100644
--- a/src/mednet/scripts/info.py
+++ b/src/mednet/scripts/info.py
@@ -34,9 +34,6 @@ def database_configuration(
Name of the library to show configurations for.
"""
- if not rc.path.exists():
- _echo(f"{lib_name} configuration", f"{str(rc.path)} [MISSING]", "white")
-
click.secho(f"configured {lib_name} databases:", bold=True)
for k, v in raw_databases.items():
if "datadir" not in v:
@@ -87,18 +84,23 @@ def info(
"cyan",
)
- _echo("mednet configuration file: ", str(load_rc().path), "white")
+ rc = load_rc()
- database_configuration(
- load_rc(),
- _get_raw_databases_classification(),
- "classification",
- )
- database_configuration(
- load_rc(),
- _get_raw_databases_segmentation(),
- "segmentation",
- )
+ if not rc.path.exists():
+ _echo("mednet configuration", f"{str(rc.path)} [MISSING]", "white")
+ else:
+ _echo("mednet configuration file: ", str(rc.path), "white")
+
+ database_configuration(
+ rc,
+ _get_raw_databases_classification(),
+ "classification",
+ )
+ database_configuration(
+ rc,
+ _get_raw_databases_segmentation(),
+ "segmentation",
+ )
click.secho("dependencies:", bold=True)
python = typing.cast(dict[str, str], m["python"])
--
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