#!/usr/bin/env bash # Runs all of our baselines # set output directory and location of "bob" executable OUTDIR=/idiap/temp/aanjos/binseg/baselines-with-validation BOB=/idiap/user/aanjos/work/bob/bob.ip.binseg/bin/bob # run <modelconfig> <dbconfig> <batchsize> [<device> [<queue>]] function run() { local device="cpu" [ $# -gt 3 ] && device="${4}" local cmd=(${BOB} binseg experiment) cmd+=("-vv" "--device=${device}" ${1} ${2}) cmd+=("--batch-size=${3}" "--output-folder=${OUTDIR}/${1}/${2}") [ $# -gt 4 ] && cmd=(jman submit "--name=$(basename ${OUTDIR})-${1}-${2}" "--memory=24G" "--queue=${5}" -- "${cmd[@]}") "${cmd[@]}" } # run/submit all baselines # comment out from "sgpu/gpu" to run locally # comment out from "cuda:0" to run on CPU run m2unet drive 16 cuda:0 sgpu run hed drive 8 cuda:0 sgpu run driu drive 8 cuda:0 sgpu run unet drive 4 cuda:0 sgpu run m2unet stare 6 cuda:0 sgpu run hed stare 4 cuda:0 sgpu run driu stare 5 cuda:0 sgpu run unet stare 2 cuda:0 sgpu run m2unet chasedb1 6 cuda:0 sgpu run hed chasedb1 4 cuda:0 sgpu run driu chasedb1 4 cuda:0 sgpu run unet chasedb1 2 cuda:0 sgpu run m2unet hrf 1 cuda:0 gpu run hed hrf 1 cuda:0 gpu run driu hrf 1 cuda:0 gpu run unet hrf 1 cuda:0 gpu run m2unet iostar-vessel 6 cuda:0 sgpu run hed iostar-vessel 4 cuda:0 sgpu run driu iostar-vessel 4 cuda:0 sgpu run unet iostar-vessel 2 cuda:0 sgpu