From ddd93aad988844c2121890b5b07890a191c824ab Mon Sep 17 00:00:00 2001 From: Andre Anjos <andre.dos.anjos@gmail.com> Date: Wed, 29 Sep 2021 08:36:12 +0200 Subject: [PATCH] [bob] Lowercase all new datasets (CXR) --- bob/ip/binseg/configs/datasets/JSRT/xtest.py | 21 ------------------- bob/ip/binseg/configs/datasets/MC/xtest.py | 21 ------------------- .../configs/datasets/Shenzhen/__init__.py | 20 ------------------ .../configs/datasets/Shenzhen/default.py | 13 ------------ .../configs/datasets/Shenzhen/default_256.py | 13 ------------ .../binseg/configs/datasets/Shenzhen/xtest.py | 21 ------------------- .../datasets/{JSRT => jsrt}/__init__.py | 2 +- .../datasets/{JSRT => jsrt}/default.py | 6 +++--- bob/ip/binseg/configs/datasets/jsrt/xtest.py | 21 +++++++++++++++++++ .../datasets/{MC => montgomery}/__init__.py | 2 +- .../datasets/{MC => montgomery}/default.py | 6 +++--- .../configs/datasets/montgomery/xtest.py | 21 +++++++++++++++++++ .../configs/datasets/shenzhen/__init__.py | 11 ++++++++++ .../configs/datasets/shenzhen/default.py | 13 ++++++++++++ .../configs/datasets/shenzhen/default_256.py | 13 ++++++++++++ .../binseg/configs/datasets/shenzhen/xtest.py | 21 +++++++++++++++++++ bob/ip/binseg/data/{JSRT => jsrt}/__init__.py | 4 ++-- .../binseg/data/{JSRT => jsrt}/default.json | 0 .../data/{MC => montgomery}/__init__.py | 4 ++-- .../data/{MC => montgomery}/default.json | 0 .../data/{Shenzhen => shenzhen}/__init__.py | 6 +++--- .../data/{Shenzhen => shenzhen}/default.json | 0 bob/ip/binseg/test/test_jsrt.py | 6 +++--- bob/ip/binseg/test/test_mc.py | 8 +++---- bob/ip/binseg/test/test_shenzhen.py | 8 +++---- 25 files changed, 126 insertions(+), 135 deletions(-) delete mode 100644 bob/ip/binseg/configs/datasets/JSRT/xtest.py delete mode 100644 bob/ip/binseg/configs/datasets/MC/xtest.py delete mode 100644 bob/ip/binseg/configs/datasets/Shenzhen/__init__.py delete mode 100644 bob/ip/binseg/configs/datasets/Shenzhen/default.py delete mode 100644 bob/ip/binseg/configs/datasets/Shenzhen/default_256.py delete mode 100644 bob/ip/binseg/configs/datasets/Shenzhen/xtest.py rename bob/ip/binseg/configs/datasets/{JSRT => jsrt}/__init__.py (81%) rename bob/ip/binseg/configs/datasets/{JSRT => jsrt}/default.py (58%) create mode 100644 bob/ip/binseg/configs/datasets/jsrt/xtest.py rename bob/ip/binseg/configs/datasets/{MC => montgomery}/__init__.py (79%) rename bob/ip/binseg/configs/datasets/{MC => montgomery}/default.py (53%) create mode 100644 bob/ip/binseg/configs/datasets/montgomery/xtest.py create mode 100644 bob/ip/binseg/configs/datasets/shenzhen/__init__.py create mode 100644 bob/ip/binseg/configs/datasets/shenzhen/default.py create mode 100644 bob/ip/binseg/configs/datasets/shenzhen/default_256.py create mode 100644 bob/ip/binseg/configs/datasets/shenzhen/xtest.py rename bob/ip/binseg/data/{JSRT => jsrt}/__init__.py (94%) rename bob/ip/binseg/data/{JSRT => jsrt}/default.json (100%) rename bob/ip/binseg/data/{MC => montgomery}/__init__.py (94%) rename bob/ip/binseg/data/{MC => montgomery}/default.json (100%) rename bob/ip/binseg/data/{Shenzhen => shenzhen}/__init__.py (91%) rename bob/ip/binseg/data/{Shenzhen => shenzhen}/default.json (100%) diff --git a/bob/ip/binseg/configs/datasets/JSRT/xtest.py b/bob/ip/binseg/configs/datasets/JSRT/xtest.py deleted file mode 100644 index 81d2fe2a..00000000 --- a/bob/ip/binseg/configs/datasets/JSRT/xtest.py +++ /dev/null @@ -1,21 +0,0 @@ -#!/usr/bin/env python -# coding=utf-8 - -"""JSRT cross-evaluation dataset -""" - -from bob.ip.binseg.configs.datasets.JSRT.default import dataset as _jsrt -from bob.ip.binseg.configs.datasets.MC.default import dataset as _mc -from bob.ip.binseg.configs.datasets.Shenzhen.default import dataset as _shenzhen - -dataset = { - "train": _jsrt["train"], - "validation": _jsrt["validation"], - "test": _jsrt["test"], - "MC (train)": _mc["train"], - "MC (validation)": _mc["validation"], - "MC (test)": _mc["test"], - "Shenzhen (train)": _shenzhen["train"], - "Shenzhen (validation)": _shenzhen["validation"], - "Shenzhen (test)": _shenzhen["test"], -} diff --git a/bob/ip/binseg/configs/datasets/MC/xtest.py b/bob/ip/binseg/configs/datasets/MC/xtest.py deleted file mode 100644 index 0a308cd3..00000000 --- a/bob/ip/binseg/configs/datasets/MC/xtest.py +++ /dev/null @@ -1,21 +0,0 @@ -#!/usr/bin/env python -# coding=utf-8 - -"""MC cross-evaluation dataset -""" - -from bob.ip.binseg.configs.datasets.JSRT.default import dataset as _jsrt -from bob.ip.binseg.configs.datasets.MC.default import dataset as _mc -from bob.ip.binseg.configs.datasets.Shenzhen.default import dataset as _shenzhen - -dataset = { - "train": _mc["train"], - "validation": _mc["validation"], - "test": _mc["test"], - "JSRT (train)": _jsrt["train"], - "JSRT (validation)": _jsrt["validation"], - "JSRT (test)": _jsrt["test"], - "Shenzhen (train)": _shenzhen["train"], - "Shenzhen (validation)": _shenzhen["validation"], - "Shenzhen (test)": _shenzhen["test"], -} diff --git a/bob/ip/binseg/configs/datasets/Shenzhen/__init__.py b/bob/ip/binseg/configs/datasets/Shenzhen/__init__.py deleted file mode 100644 index 481afa61..00000000 --- a/bob/ip/binseg/configs/datasets/Shenzhen/__init__.py +++ /dev/null @@ -1,20 +0,0 @@ -#!/usr/bin/env python -# coding=utf-8 - - -def _maker(protocol): - - from ....data.Shenzhen import dataset as raw - from ....data.transforms import Resize - from .. import make_dataset as mk - - return mk(raw.subsets(protocol), [Resize((512, 512))]) - - -def _maker_256(protocol): - - from ....data.Shenzhen import dataset as raw - from ....data.transforms import Resize - from .. import make_dataset as mk - - return mk(raw.subsets(protocol), [Resize((256, 256))]) diff --git a/bob/ip/binseg/configs/datasets/Shenzhen/default.py b/bob/ip/binseg/configs/datasets/Shenzhen/default.py deleted file mode 100644 index 0a82ef34..00000000 --- a/bob/ip/binseg/configs/datasets/Shenzhen/default.py +++ /dev/null @@ -1,13 +0,0 @@ -#!/usr/bin/env python -# coding=utf-8 - -"""Shenzhen dataset for Lung Segmentation (default protocol) - -* Split reference: [GAÃL-2020]_ -* Configuration resolution: 512 x 512 -* See :py:mod:`bob.ip.binseg.data.Shenzhen` for dataset details -""" - -from bob.ip.binseg.configs.datasets.Shenzhen import _maker - -dataset = _maker("default") diff --git a/bob/ip/binseg/configs/datasets/Shenzhen/default_256.py b/bob/ip/binseg/configs/datasets/Shenzhen/default_256.py deleted file mode 100644 index 468a00e6..00000000 --- a/bob/ip/binseg/configs/datasets/Shenzhen/default_256.py +++ /dev/null @@ -1,13 +0,0 @@ -#!/usr/bin/env python -# coding=utf-8 - -"""Shenzhen dataset for Lung Segmentation (default protocol) - -* Split reference: [GAÃL-2020]_ -* Configuration resolution: 512 x 512 -* See :py:mod:`bob.ip.binseg.data.Shenzhen` for dataset details -""" - -from bob.ip.binseg.configs.datasets.Shenzhen import _maker_256 - -dataset = _maker_256("default") diff --git a/bob/ip/binseg/configs/datasets/Shenzhen/xtest.py b/bob/ip/binseg/configs/datasets/Shenzhen/xtest.py deleted file mode 100644 index 6a42c67d..00000000 --- a/bob/ip/binseg/configs/datasets/Shenzhen/xtest.py +++ /dev/null @@ -1,21 +0,0 @@ -#!/usr/bin/env python -# coding=utf-8 - -"""Shenzhen cross-evaluation dataset -""" - -from bob.ip.binseg.configs.datasets.JSRT.default import dataset as _jsrt -from bob.ip.binseg.configs.datasets.MC.default import dataset as _mc -from bob.ip.binseg.configs.datasets.Shenzhen.default import dataset as _shenzhen - -dataset = { - "train": _shenzhen["train"], - "validation": _shenzhen["validation"], - "test": _shenzhen["test"], - "MC (train)": _mc["train"], - "MC (validation)": _mc["validation"], - "MC (test)": _mc["test"], - "JSRT (train)": _jsrt["train"], - "JSRT (validation)": _jsrt["validation"], - "JSRT (test)": _jsrt["test"], -} diff --git a/bob/ip/binseg/configs/datasets/JSRT/__init__.py b/bob/ip/binseg/configs/datasets/jsrt/__init__.py similarity index 81% rename from bob/ip/binseg/configs/datasets/JSRT/__init__.py rename to bob/ip/binseg/configs/datasets/jsrt/__init__.py index 2d5ca848..35453e83 100644 --- a/bob/ip/binseg/configs/datasets/JSRT/__init__.py +++ b/bob/ip/binseg/configs/datasets/jsrt/__init__.py @@ -4,7 +4,7 @@ def _maker(protocol): - from ....data.JSRT import dataset as raw + from ....data.jsrt import dataset as raw from ....data.transforms import Resize from .. import make_dataset as mk diff --git a/bob/ip/binseg/configs/datasets/JSRT/default.py b/bob/ip/binseg/configs/datasets/jsrt/default.py similarity index 58% rename from bob/ip/binseg/configs/datasets/JSRT/default.py rename to bob/ip/binseg/configs/datasets/jsrt/default.py index c8c6fabf..0507092b 100644 --- a/bob/ip/binseg/configs/datasets/JSRT/default.py +++ b/bob/ip/binseg/configs/datasets/jsrt/default.py @@ -3,11 +3,11 @@ """Japanese Society of Radiological Technology dataset for Lung Segmentation (default protocol) -* Split reference: [GAÃL-2020]_ +* Split reference: [GAAL-2020]_ * Configuration resolution: 512 x 512 -* See :py:mod:`bob.ip.binseg.data.JSRT` for dataset details +* See :py:mod:`bob.ip.binseg.data.jsrt` for dataset details """ -from bob.ip.binseg.configs.datasets.JSRT import _maker +from bob.ip.binseg.configs.datasets.jsrt import _maker dataset = _maker("default") diff --git a/bob/ip/binseg/configs/datasets/jsrt/xtest.py b/bob/ip/binseg/configs/datasets/jsrt/xtest.py new file mode 100644 index 00000000..b14919ec --- /dev/null +++ b/bob/ip/binseg/configs/datasets/jsrt/xtest.py @@ -0,0 +1,21 @@ +#!/usr/bin/env python +# coding=utf-8 + +"""JSRT CXR cross-evaluation dataset +""" + +from bob.ip.binseg.configs.datasets.jsrt.default import dataset as _jsrt +from bob.ip.binseg.configs.datasets.montgomery.default import dataset as _mc +from bob.ip.binseg.configs.datasets.shenzhen.default import dataset as _shenzhen + +dataset = { + "train": _jsrt["train"], + "validation": _jsrt["validation"], + "test": _jsrt["test"], + "montgomery (train)": _mc["train"], + "montgomery (validation)": _mc["validation"], + "montgomery (test)": _mc["test"], + "shenzhen (train)": _shenzhen["train"], + "shenzhen (validation)": _shenzhen["validation"], + "shenzhen (test)": _shenzhen["test"], +} diff --git a/bob/ip/binseg/configs/datasets/MC/__init__.py b/bob/ip/binseg/configs/datasets/montgomery/__init__.py similarity index 79% rename from bob/ip/binseg/configs/datasets/MC/__init__.py rename to bob/ip/binseg/configs/datasets/montgomery/__init__.py index b4aacadf..54ae569a 100644 --- a/bob/ip/binseg/configs/datasets/MC/__init__.py +++ b/bob/ip/binseg/configs/datasets/montgomery/__init__.py @@ -4,7 +4,7 @@ def _maker(protocol): - from ....data.MC import dataset as raw + from ....data.montgomery import dataset as raw from ....data.transforms import Resize from .. import make_dataset as mk diff --git a/bob/ip/binseg/configs/datasets/MC/default.py b/bob/ip/binseg/configs/datasets/montgomery/default.py similarity index 53% rename from bob/ip/binseg/configs/datasets/MC/default.py rename to bob/ip/binseg/configs/datasets/montgomery/default.py index 0d06272c..96f94141 100644 --- a/bob/ip/binseg/configs/datasets/MC/default.py +++ b/bob/ip/binseg/configs/datasets/montgomery/default.py @@ -3,11 +3,11 @@ """Montgomery County dataset for Lung Segmentation (default protocol) -* Split reference: [GAÃL-2020]_ +* Split reference: [GAAL-2020]_ * Configuration resolution: 512 x 512 -* See :py:mod:`bob.ip.binseg.data.MC` for dataset details +* See :py:mod:`bob.ip.binseg.data.montgomery` for dataset details """ -from bob.ip.binseg.configs.datasets.MC import _maker +from bob.ip.binseg.configs.datasets.montgomery import _maker dataset = _maker("default") diff --git a/bob/ip/binseg/configs/datasets/montgomery/xtest.py b/bob/ip/binseg/configs/datasets/montgomery/xtest.py new file mode 100644 index 00000000..c350b603 --- /dev/null +++ b/bob/ip/binseg/configs/datasets/montgomery/xtest.py @@ -0,0 +1,21 @@ +#!/usr/bin/env python +# coding=utf-8 + +"""Montgomery County cross-evaluation dataset +""" + +from bob.ip.binseg.configs.datasets.jsrt.default import dataset as _jsrt +from bob.ip.binseg.configs.datasets.montgomery.default import dataset as _mc +from bob.ip.binseg.configs.datasets.shenzhen.default import dataset as _shenzhen + +dataset = { + "train": _mc["train"], + "validation": _mc["validation"], + "test": _mc["test"], + "jsrt (train)": _jsrt["train"], + "jsrt (validation)": _jsrt["validation"], + "jsrt (test)": _jsrt["test"], + "shenzhen (train)": _shenzhen["train"], + "shenzhen (validation)": _shenzhen["validation"], + "shenzhen (test)": _shenzhen["test"], +} diff --git a/bob/ip/binseg/configs/datasets/shenzhen/__init__.py b/bob/ip/binseg/configs/datasets/shenzhen/__init__.py new file mode 100644 index 00000000..d0887bb5 --- /dev/null +++ b/bob/ip/binseg/configs/datasets/shenzhen/__init__.py @@ -0,0 +1,11 @@ +#!/usr/bin/env python +# coding=utf-8 + + +def _maker(protocol, n): + + from ....data.shenzhen import dataset as raw + from ....data.transforms import Resize + from .. import make_dataset as mk + + return mk(raw.subsets(protocol), [Resize((n, n))]) diff --git a/bob/ip/binseg/configs/datasets/shenzhen/default.py b/bob/ip/binseg/configs/datasets/shenzhen/default.py new file mode 100644 index 00000000..b74107a0 --- /dev/null +++ b/bob/ip/binseg/configs/datasets/shenzhen/default.py @@ -0,0 +1,13 @@ +#!/usr/bin/env python +# coding=utf-8 + +"""Shenzhen dataset for Lung Segmentation (default protocol) + +* Split reference: [GAAL-2020]_ +* Configuration resolution: 512 x 512 +* See :py:mod:`bob.ip.binseg.data.shenzhen` for dataset details +""" + +from bob.ip.binseg.configs.datasets.shenzhen import _maker + +dataset = _maker("default", 512) diff --git a/bob/ip/binseg/configs/datasets/shenzhen/default_256.py b/bob/ip/binseg/configs/datasets/shenzhen/default_256.py new file mode 100644 index 00000000..2152e178 --- /dev/null +++ b/bob/ip/binseg/configs/datasets/shenzhen/default_256.py @@ -0,0 +1,13 @@ +#!/usr/bin/env python +# coding=utf-8 + +"""Shenzhen dataset for Lung Segmentation (default protocol) + +* Split reference: [GAAL-2020]_ +* Configuration resolution: 256 x 256 pixels +* See :py:mod:`bob.ip.binseg.data.shenzhen` for dataset details +""" + +from bob.ip.binseg.configs.datasets.shenzhen import _maker + +dataset = _maker("default", 256) diff --git a/bob/ip/binseg/configs/datasets/shenzhen/xtest.py b/bob/ip/binseg/configs/datasets/shenzhen/xtest.py new file mode 100644 index 00000000..52da00da --- /dev/null +++ b/bob/ip/binseg/configs/datasets/shenzhen/xtest.py @@ -0,0 +1,21 @@ +#!/usr/bin/env python +# coding=utf-8 + +"""Shenzhen cross-evaluation dataset +""" + +from bob.ip.binseg.configs.datasets.jsrt.default import dataset as _jsrt +from bob.ip.binseg.configs.datasets.montgomery.default import dataset as _mc +from bob.ip.binseg.configs.datasets.shenzhen.default import dataset as _shenzhen + +dataset = { + "train": _shenzhen["train"], + "validation": _shenzhen["validation"], + "test": _shenzhen["test"], + "montgomery (train)": _mc["train"], + "montgomery (validation)": _mc["validation"], + "montgomery (test)": _mc["test"], + "jsrt (train)": _jsrt["train"], + "jsrt (validation)": _jsrt["validation"], + "jsrt (test)": _jsrt["test"], +} diff --git a/bob/ip/binseg/data/JSRT/__init__.py b/bob/ip/binseg/data/jsrt/__init__.py similarity index 94% rename from bob/ip/binseg/data/JSRT/__init__.py rename to bob/ip/binseg/data/jsrt/__init__.py index 42a26cc4..bd913a51 100644 --- a/bob/ip/binseg/data/JSRT/__init__.py +++ b/bob/ip/binseg/data/jsrt/__init__.py @@ -10,7 +10,7 @@ available. * Reference: [JSRT-2000]_ * Original resolution (height x width): 2048 x 2048 * Configuration resolution: 512 x 512 (after rescaling) -* Split reference: [GAÃL-2020]_ +* Split reference: [GAAL-2020]_ * Protocol ``default``: * Training samples: 172 (including labels) @@ -36,7 +36,7 @@ _protocols = [ ] _root_path = bob.extension.rc.get( - "bob.ip.binseg.JSRT.datadir", os.path.realpath(os.curdir) + "bob.ip.binseg.jsrt.datadir", os.path.realpath(os.curdir) ) diff --git a/bob/ip/binseg/data/JSRT/default.json b/bob/ip/binseg/data/jsrt/default.json similarity index 100% rename from bob/ip/binseg/data/JSRT/default.json rename to bob/ip/binseg/data/jsrt/default.json diff --git a/bob/ip/binseg/data/MC/__init__.py b/bob/ip/binseg/data/montgomery/__init__.py similarity index 94% rename from bob/ip/binseg/data/MC/__init__.py rename to bob/ip/binseg/data/montgomery/__init__.py index d479eb61..b1d7844b 100644 --- a/bob/ip/binseg/data/MC/__init__.py +++ b/bob/ip/binseg/data/montgomery/__init__.py @@ -10,7 +10,7 @@ normal cases. It contains a total of 138 resolution of 4020 x 4892, or * Reference: [MC-2014]_ * Original resolution (height x width): 4020 x 4892, or 4892 x 4020 * Configuration resolution: 512 x 512 (after rescaling) -* Split reference: [GAÃL-2020]_ +* Split reference: [GAAL-2020]_ * Protocol ``default``: * Training samples: 96 (including labels) @@ -36,7 +36,7 @@ _protocols = [ ] _root_path = bob.extension.rc.get( - "bob.ip.binseg.MC.datadir", os.path.realpath(os.curdir) + "bob.ip.binseg.montgomery.datadir", os.path.realpath(os.curdir) ) diff --git a/bob/ip/binseg/data/MC/default.json b/bob/ip/binseg/data/montgomery/default.json similarity index 100% rename from bob/ip/binseg/data/MC/default.json rename to bob/ip/binseg/data/montgomery/default.json diff --git a/bob/ip/binseg/data/Shenzhen/__init__.py b/bob/ip/binseg/data/shenzhen/__init__.py similarity index 91% rename from bob/ip/binseg/data/Shenzhen/__init__.py rename to bob/ip/binseg/data/shenzhen/__init__.py index 89f9e723..689b72ba 100644 --- a/bob/ip/binseg/data/Shenzhen/__init__.py +++ b/bob/ip/binseg/data/shenzhen/__init__.py @@ -11,7 +11,7 @@ available for 566 of the 662 images. * Reference: [SHENZHEN-2014]_ * Original resolution (height x width): Approximately 3K x 3K (varies) * Configuration resolution: 512 x 512 (after rescaling) -* Split reference: [GAÃL-2020]_ +* Split reference: [GAAL-2020]_ * Protocol ``default``: * Training samples: 396 (including labels) @@ -34,7 +34,7 @@ _protocols = [ ] _root_path = bob.extension.rc.get( - "bob.ip.binseg.Shenzhen.datadir", os.path.realpath(os.curdir) + "bob.ip.binseg.shenzhen.datadir", os.path.realpath(os.curdir) ) @@ -55,4 +55,4 @@ dataset = JSONDataset( protocols=_protocols, fieldnames=("data", "label"), loader=_loader ) -"""Shenzhen dataset object""" +"""Shenzhen CXR dataset object""" diff --git a/bob/ip/binseg/data/Shenzhen/default.json b/bob/ip/binseg/data/shenzhen/default.json similarity index 100% rename from bob/ip/binseg/data/Shenzhen/default.json rename to bob/ip/binseg/data/shenzhen/default.json diff --git a/bob/ip/binseg/test/test_jsrt.py b/bob/ip/binseg/test/test_jsrt.py index e275d81f..37f33614 100644 --- a/bob/ip/binseg/test/test_jsrt.py +++ b/bob/ip/binseg/test/test_jsrt.py @@ -7,7 +7,7 @@ import numpy import pytest -from ..data.JSRT import dataset +from ..data.jsrt import dataset from .utils import count_bw @@ -32,7 +32,7 @@ def test_protocol_consistency(): assert s.key.startswith("JSRT") -@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.JSRT.datadir") +@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.jsrt.datadir") def test_loading(): image_size = (2048, 2048) @@ -74,6 +74,6 @@ def test_loading(): del proportions # only to satisfy flake8 -@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.JSRT.datadir") +@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.jsrt.datadir") def test_check(): assert dataset.check() == 0 diff --git a/bob/ip/binseg/test/test_mc.py b/bob/ip/binseg/test/test_mc.py index cfe82bd6..7df4bd01 100644 --- a/bob/ip/binseg/test/test_mc.py +++ b/bob/ip/binseg/test/test_mc.py @@ -2,12 +2,12 @@ # coding=utf-8 -"""Tests for Montgomery County""" +"""Tests for Montgomery County CXR dataset""" import numpy import pytest -from ..data.MC import dataset +from ..data.montgomery import dataset from .utils import count_bw @@ -32,7 +32,7 @@ def test_protocol_consistency(): assert s.key.startswith("MontgomerySet") -@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.MC.datadir") +@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.montgomery.datadir") def test_loading(): image_size_1 = (4892, 4020) @@ -80,6 +80,6 @@ def test_loading(): del proportions # only to satisfy flake8 -@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.MC.datadir") +@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.montgomery.datadir") def test_check(): assert dataset.check() == 0 diff --git a/bob/ip/binseg/test/test_shenzhen.py b/bob/ip/binseg/test/test_shenzhen.py index d710afda..95a1e2c8 100644 --- a/bob/ip/binseg/test/test_shenzhen.py +++ b/bob/ip/binseg/test/test_shenzhen.py @@ -2,12 +2,12 @@ # coding=utf-8 -"""Tests for Shenzhen""" +"""Tests for Shenzhen CXR dataset""" import numpy import pytest -from ..data.Shenzhen import dataset +from ..data.shenzhen import dataset from .utils import count_bw @@ -32,7 +32,7 @@ def test_protocol_consistency(): assert s.key.startswith("ChinaSet_AllFiles") -@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.Shenzhen.datadir") +@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.shenzhen.datadir") def test_loading(): min_image_size = (1130, 948) @@ -76,6 +76,6 @@ def test_loading(): del proportions # only to satisfy flake8 -@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.Shenzhen.datadir") +@pytest.mark.skip_if_rc_var_not_set("bob.ip.binseg.shenzhen.datadir") def test_check(): assert dataset.check() == 0 -- GitLab