From a0017111845b4ef46f4b715622ab16d0cdcab8a1 Mon Sep 17 00:00:00 2001
From: Andre Anjos <andre.dos.anjos@gmail.com>
Date: Tue, 28 Apr 2020 22:06:46 +0200
Subject: [PATCH] [doc] Fix doc building
---
doc/links.rst | 22 ++++++++++++++++++
doc/results/baselines/index.rst | 40 ++++++++++++++++-----------------
2 files changed, 42 insertions(+), 20 deletions(-)
diff --git a/doc/links.rst b/doc/links.rst
index c11297d8..ce2c72d6 100644
--- a/doc/links.rst
+++ b/doc/links.rst
@@ -27,6 +27,28 @@
.. Pretrained models
+.. _baselines_driu_drive: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/drive/model.pth
+.. _baselines_hed_drive: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/drive/model.pth
+.. _baselines_m2unet_drive: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/drive/model.pth
+.. _baselines_unet_drive: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/drive/model.pth
+.. _baselines_driu_stare: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/stare/model.pth
+.. _baselines_hed_stare: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/stare/model.pth
+.. _baselines_m2unet_stare: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/stare/model.pth
+.. _baselines_unet_stare: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/stare/model.pth
+.. _baselines_driu_chase: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/chasedb1/model.pth
+.. _baselines_hed_chase: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/chasedb1/model.pth
+.. _baselines_m2unet_chase: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/chasedb1/model.pth
+.. _baselines_unet_chase: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/chasedb1/model.pth
+.. _baselines_driu_hrf: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/hrf/model.pth
+.. _baselines_hed_hrf: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/hrf/model.pth
+.. _baselines_m2unet_hrf: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/hrf/model.pth
+.. _baselines_unet_hrf: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/hrf/model.pth
+.. _baselines_driu_iostar: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/iostar-vessel/model.pth
+.. _baselines_hed_iostar: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/iostar-vessel/model.pth
+.. _baselines_m2unet_iostar: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/iostar-vessel/model.pth
+.. _baselines_unet_iostar: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/iostar-vessel/model.pth
+
+
.. DRIVE
.. _driu_drive.pth: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/DRIU_DRIVE.pth
.. _m2unet_drive.pth: https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/M2UNet_DRIVE.pth
diff --git a/doc/results/baselines/index.rst b/doc/results/baselines/index.rst
index 64a361c1..97afcdd5 100644
--- a/doc/results/baselines/index.rst
+++ b/doc/results/baselines/index.rst
@@ -41,34 +41,34 @@ F1 Scores (micro-level)
- :py:mod:`unet (25.8M) <bob.ip.binseg.configs.models.unet>`
* - :py:mod:`drive <bob.ip.binseg.configs.datasets.drive.default>`
- 0.788 (0.021)
- - `0.819 (0.016) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/drive/model.pth>`_
- - `0.806 (0.015) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/drive/model.pth>`_
- - `0.804 (0.014) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/drive/model.pth>`_
- - `0.823 (0.015) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/drive/model.pth>`_
+ - `0.819 (0.016) <baselines_driu_drive_>`_
+ - `0.806 (0.015) <baselines_hed_drive_>`_
+ - `0.804 (0.014) <baselines_m2unet_drive_>`_
+ - `0.823 (0.015) <baselines_unet_drive_>`_
* - :py:mod:`stare <bob.ip.binseg.configs.datasets.stare.ah>`
- 0.759 (0.028)
- - `0.824 (0.037) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/stare/model.pth>`_
- - `0.810 (0.045) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/stare/model.pth>`_
- - `0.811 (0.039) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/stare/model.pth>`_
- - `0.828 (0.041) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/stare/model.pth>`_
+ - `0.824 (0.037) <baselines_driu_stare_>`_
+ - `0.810 (0.045) <baselines_hed_stare_>`_
+ - `0.811 (0.039) <baselines_m2unet_stare_>`_
+ - `0.828 (0.041) <baselines_unet_stare_>`_
* - :py:mod:`chasedb1 <bob.ip.binseg.configs.datasets.chasedb1.first_annotator>`
- 0.768 0.023
- - `0.811 (0.018) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/chasedb1/model.pth>`_
- - `0.806 (0.021) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/chasedb1/model.pth>`_
- - `0.801 (0.018) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/chasedb1/model.pth>`_
- - `0.802 (0.015) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/chasedb1/model.pth>`_
+ - `0.811 (0.018) <baselines_driu_chase_>`_
+ - `0.806 (0.021) <baselines_hed_chase_>`_
+ - `0.801 (0.018) <baselines_m2unet_chase_>`_
+ - `0.802 (0.015) <baselines_unet_chase_>`_
* - :py:mod:`hrf <bob.ip.binseg.configs.datasets.hrf.default>`
-
- - `0.802 (0.039) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/hrf/model.pth>`_
- - `0.793 (0.041) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/hrf/model.pth>`_
- - `0.796 (0.043) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/hrf/model.pth>`_
- - `0.798 (0.038) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/hrf/model.pth>`_
+ - `0.802 (0.039) <baselines_driu_hrf_>`_
+ - `0.793 (0.041) <baselines_hed_hrf_>`_
+ - `0.796 (0.043) <baselines_m2unet_hrf_>`_
+ - `0.798 (0.038) <baselines_unet_hrf_>`_
* - :py:mod:`iostar-vessel <bob.ip.binseg.configs.datasets.iostar.vessel>`
-
- - `0.825 (0.021) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/driu/iostar-vessel/model.pth>`_
- - `0.822 (0.023) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/hed/iostar-vessel/model.pth>`_
- - `0.817 (0.021) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/m2unet/iostar-vessel/model.pth>`_
- - `0.818 (0.019) <https://www.idiap.ch/software/bob/data/bob/bob.ip.binseg/master/baselines/unet/iostar-vessel/model.pth>`_
+ - `0.825 (0.021) <baselines_driu_iostar_>`_
+ - `0.822 (0.023) <baselines_hed_iostar_>`_
+ - `0.817 (0.021) <baselines_m2unet_iostar_>`_
+ - `0.818 (0.019) <baselines_unet_iostar_>`_
Precision-Recall (PR) Curves
--
GitLab