From 13d18254fd52b850f18b75917ef37ba8b5a54ace Mon Sep 17 00:00:00 2001
From: Andre Anjos <andre.dos.anjos@gmail.com>
Date: Tue, 14 Apr 2020 15:54:36 +0200
Subject: [PATCH] [doc] Adjustments for REFUGE dataset
---
bob/ip/binseg/data/refuge/__init__.py | 41 +++++++++++++--------------
doc/api.rst | 4 +++
doc/datasets.rst | 19 +++----------
3 files changed, 28 insertions(+), 36 deletions(-)
diff --git a/bob/ip/binseg/data/refuge/__init__.py b/bob/ip/binseg/data/refuge/__init__.py
index 717d6cdd..d96db5ec 100644
--- a/bob/ip/binseg/data/refuge/__init__.py
+++ b/bob/ip/binseg/data/refuge/__init__.py
@@ -8,29 +8,28 @@ challenge. The goal of the challenge is to evaluate and compare automated
algorithms for glaucoma detection and optic disc/cup segmentation on a common
dataset of retinal fundus images.
-* Reference: [REFUGE-2018]_
+* Reference (including train/dev/test split): [REFUGE-2018]_
* Protocols ``optic-disc`` and ``cup``:
- * Training samples:
- * 400
- * includes optic-disc and cup labels
- * includes label: glaucomatous and non-glaucomatous
- * original resolution: 2056 x 2124
- * Validation samples: 400:
- * 400
- * includes optic-disc and cup labels
- * original resolution: 1634 x 1634
- * Test samples:
- * 400
- * includes optic-disc and cup labels
- * includes label: glaucomatous and non-glaucomatous
- * original resolution:
-* Split reference: [REFUGE-2018]_
-
-.. warning:
-
- Notice that the data cropping/resizing algorithm applied on training and
- "validation" data are slightly different and need to be cross-checked.
+ * Training samples:
+
+ * 400
+ * includes optic-disc and cup labels
+ * includes label: glaucomatous and non-glaucomatous
+ * original resolution: 2056 x 2124
+
+ * Validation samples:
+
+ * 400
+ * includes optic-disc and cup labels
+ * original resolution: 1634 x 1634
+
+ * Test samples:
+
+ * 400
+ * includes optic-disc and cup labels
+ * includes label: glaucomatous and non-glaucomatous
+ * original resolution:
"""
import os
diff --git a/doc/api.rst b/doc/api.rst
index 00363759..84b50c5b 100644
--- a/doc/api.rst
+++ b/doc/api.rst
@@ -36,6 +36,7 @@ Datasets
bob.ip.binseg.data.chasedb1
bob.ip.binseg.data.hrf
bob.ip.binseg.data.iostar
+ bob.ip.binseg.data.refuge
Engines
@@ -171,8 +172,11 @@ Datasets
bob.ip.binseg.configs.datasets.dristhigs1_od_test
bob.ip.binseg.configs.datasets.refuge_cup
+ bob.ip.binseg.configs.datasets.refuge_cup_dev
+ bob.ip.binseg.configs.datasets.refuge_cup_test
bob.ip.binseg.configs.datasets.refuge_cup_test
bob.ip.binseg.configs.datasets.refuge_od
+ bob.ip.binseg.configs.datasets.refuge_od_dev
bob.ip.binseg.configs.datasets.refuge_od_test
bob.ip.binseg.configs.datasets.rimoner3_cup
diff --git a/doc/datasets.rst b/doc/datasets.rst
index 61bacb0d..54092eb4 100644
--- a/doc/datasets.rst
+++ b/doc/datasets.rst
@@ -113,27 +113,16 @@ to generate iterators for training and testing.
- [DRISHTIGS1-2014]_
- 50
- 51
- * - REFUGE_ (train)
+ * - REFUGE_
- [REFUGE-2018]_
- - 2056 x 2124
- - 400
+ - 2056 x 2124 (1634 x 1634)
+ - 1200 (400+400+400)
-
-
- x
- x
- [REFUGE-2018]_
- - 400
- -
- * - REFUGE_ (val)
- - [REFUGE-2018]_
- - 1634 x 1634
- - 400
- -
- -
- - x
- - x
- - [REFUGE-2018]_
- -
+ - 400 (+400)
- 400
--
GitLab