bob issueshttps://gitlab.idiap.ch/groups/bob/-/issues2020-05-05T07:38:59Zhttps://gitlab.idiap.ch/bob/bob.pipelines/-/issues/6Follow-up from "WIP: Make scikit operations daskable"2020-05-05T07:38:59ZTiago de Freitas PereiraFollow-up from "WIP: Make scikit operations daskable"The following discussion from !5 should be addressed:
- [ ] @amohammadi started a [discussion](https://gitlab.idiap.ch/bob/bob.pipelines/merge_requests/5#note_50170): (+2 comments)
> Is it possible to put this inside a scikit.pipe...The following discussion from !5 should be addressed:
- [ ] @amohammadi started a [discussion](https://gitlab.idiap.ch/bob/bob.pipelines/merge_requests/5#note_50170): (+2 comments)
> Is it possible to put this inside a scikit.pipeline?Tiago de Freitas PereiraTiago de Freitas Pereirahttps://gitlab.idiap.ch/bob/bob/-/issues/261Possible changing plan2020-12-15T08:35:24ZTiago de Freitas PereiraPossible changing planI will keep this issue opened to keep track of a possible changing plan for Bob.
For the moment, follow below possible candidates that we could archive.
We have 116 packages in total,
- [ ] bob.buildout
- [ ] bob.extension
- [ ] bob.bl...I will keep this issue opened to keep track of a possible changing plan for Bob.
For the moment, follow below possible candidates that we could archive.
We have 116 packages in total,
- [ ] bob.buildout
- [ ] bob.extension
- [ ] bob.blitz
- [ ] bob.core
- [ ] bob.io.base
- [ ] bob.math
- [ ] bob.measure
- [ ] bob.io.image
- [ ] bob.db.base
- [ ] bob.io.video
- [x] bob.io.matlab
- [ ] bob.io.audio
- [ ] bob.sp
- [ ] bob.ap
- [ ] bob.ip.base
- [ ] bob.ip.color
- [x] bob.ip.draw
- [ ] bob.ip.gabor
- [ ] bob.learn.activation
- [x] bob.learn.libsvm
- [ ] bob.learn.linear
- [x] bob.learn.mlp
- [x] bob.learn.boosting
- [ ] bob.db.iris
- [ ] bob.learn.em
- [x] bob.db.wine
- [ ] bob.db.mnist
- [ ] bob.db.atnt
- [ ] bob.ip.facedetect
- [x] bob.ip.optflow.hornschunck
- [x] bob.ip.optflow.liu
- [x] bob.ip.flandmark
- [ ] gridtk
- [ ] bob.ip.qualitymeasure
- [ ] bob.ip.skincolorfilter
- [x] bob.ip.facelandmarks
- [x] bob.ip.dlib
- [ ] bob.db.arface
- [ ] bob.db.asvspoof
- [ ] bob.db.asvspoof2017
- [ ] bob.db.atvskeystroke
- [x] bob.db.avspoof
- [x] bob.db.banca
- [x] bob.db.biosecure
- [x] bob.db.biosecurid.face
- [ ] bob.db.casia_fasd
- [x] bob.db.casme2
- [x] bob.db.caspeal
- [x] bob.db.cohface
- [x] bob.db.frgc
- [ ] bob.db.gbu
- [x] bob.db.hci_tagging
- [x] bob.db.ijba
- [ ] bob.db.ijbc
- [ ] bob.db.kboc16
- [ ] bob.db.lfw
- [ ] bob.db.livdet2013
- [ ] bob.db.mobio
- [x] bob.db.msu_mfsd_mod
- [ ] bob.db.multipie
- [x] bob.db.nist_sre12
- [ ] bob.db.putvein
- [ ] bob.db.replay
- [ ] bob.db.replaymobile
- [x] bob.db.scface
- [ ] bob.db.utfvp
- [ ] bob.db.verafinger
- [ ] bob.db.fv3d
- [ ] bob.db.hkpu
- [ ] bob.db.thufvdt
- [ ] bob.db.mmcbnu6k
- [ ] bob.db.hmtvein
- [ ] bob.db.voicepa
- [x] bob.db.xm2vts
- [ ] bob.db.youtube
- [x] bob.db.pericrosseye
- [ ] bob.db.maskattack
- [ ] bob.db.casiasurf
- [ ] bob.db.fargo
- [ ] bob.bio.base
- [ ] bob.bio.gmm
- [ ] bob.bio.face
- [x] bob.bio.spear
- [ ] bob.bio.video
- [ ] bob.bio.vein
- [ ] bob.db.voxforge
- [x] bob.rppg.base
- [ ] bob.pad.base
- [ ] bob.pad.face
- [x] bob.pad.voice
- [x] bob.pad.vein
- [ ] bob.fusion.base
- [ ] bob.db.oulunpu
- [ ] bob.db.uvad
- [ ] bob.db.swan
- [ ] bob.db.cuhk_cufs
- [ ] bob.db.cbsr_nir_vis_2
- [ ] bob.db.nivl
- [ ] bob.db.pola_thermal
- [ ] bob.db.cuhk_cufsf
- [ ] bob.db.ldhf
- [ ] bob.ip.tensorflow_extractor
- [ ] bob.learn.tensorflow
- [ ] bob.learn.pytorch
- [x] bob.bio.face_ongoing
- [ ] bob.bio.htface
- [ ] bob.db.drive
- [ ] bob.db.stare
- [ ] bob.db.chasedb1
- [ ] bob.db.iostar
- [ ] bob.db.hrf
- [ ] bob.db.rimoner3
- [ ] bob.db.drionsdb
- [ ] bob.db.refuge
- [ ] bob.db.drishtigs1
- [ ] bob.ip.binsegBob 9.0.0https://gitlab.idiap.ch/bob/bob.extension/-/issues/74Numpy documentation has moved2020-03-13T07:09:20ZAmir MOHAMMADINumpy documentation has movedStarting from numpy 1.18, the docs are available in https://numpy.org/doc/
the sphinx object links are also changed. For example:
```
# This
https://docs.scipy.org/doc/numpy-1.18.0/objects.inv
# should change to
https://numpy.org/doc/1.1...Starting from numpy 1.18, the docs are available in https://numpy.org/doc/
the sphinx object links are also changed. For example:
```
# This
https://docs.scipy.org/doc/numpy-1.18.0/objects.inv
# should change to
https://numpy.org/doc/1.18/objects.inv
```Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.ip.tensorflow_extractor/-/issues/9Tensorflow 2 compatibility2020-03-11T16:11:45ZAmir MOHAMMADITensorflow 2 compatibilityThis package does not work with tensorflow 2!This package does not work with tensorflow 2!Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.pipelines/-/issues/5Dask Mixin classes for pipelines2020-03-23T17:21:51ZAmir MOHAMMADIDask Mixin classes for pipelinesIt would be a good idea to have mixin classes to turn transformers dask aware.
This was proposed by @andre.anjos. @tiago.pereira and I have discussed this and see the comments for what we came up with.It would be a good idea to have mixin classes to turn transformers dask aware.
This was proposed by @andre.anjos. @tiago.pereira and I have discussed this and see the comments for what we came up with.Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.face/-/issues/34Failure with MTCNN when face is not found2020-03-09T16:16:16ZAnjith GEORGEanjith.george@idiap.chFailure with MTCNN when face is not foundThere is a key error, when face is not detected. The problem is this line
`https://gitlab.idiap.ch/bob/bob.bio.face/blob/master/bob/bio/face/annotator/bobipmtcnn.py#L29`There is a key error, when face is not detected. The problem is this line
`https://gitlab.idiap.ch/bob/bob.bio.face/blob/master/bob/bio/face/annotator/bobipmtcnn.py#L29`Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.paper.pad_mccnns_swirdiff/-/issues/2Branches2020-03-09T08:20:30ZAnjith GEORGEanjith.george@idiap.chBranchesNow that the revision is submitted, we can use `bob.db.hqwmca` for all further experiments is it?.
And can you merge the branch to master if the configs are final.Now that the revision is submitted, we can use `bob.db.hqwmca` for all further experiments is it?.
And can you merge the branch to master if the configs are final.Guillaume HEUSCHGuillaume HEUSCHhttps://gitlab.idiap.ch/bob/bob.bio.base/-/issues/132`numpy.testing.decorators.setastest` is no longer available in the latest `nu...2020-03-10T16:10:40ZManuel Günthersiebenkopf@googlemail.com`numpy.testing.decorators.setastest` is no longer available in the latest `numpy 1.18`Updating to `numpy` version 1.18 breaks this package as the import https://gitlab.idiap.ch/bob/bob.bio.base/blob/33b527af1418dff1812e2613d91f55b6e8ee61c8/bob/bio/base/database/database.py#L8 fails.
Workarounds:
1. Use `numpy` version 1....Updating to `numpy` version 1.18 breaks this package as the import https://gitlab.idiap.ch/bob/bob.bio.base/blob/33b527af1418dff1812e2613d91f55b6e8ee61c8/bob/bio/base/database/database.py#L8 fails.
Workarounds:
1. Use `numpy` version 1.17
2. Remove this import and its later use.
I have currently no solution how to replace the functionality of `numpy.testing.decorators.setastest`, though.Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.pipelines/-/issues/4Implement checkpointable processors2020-03-09T15:49:22ZAmir MOHAMMADIImplement checkpointable processorsCheckpointable process can be integrated with the Sample class and automaticall cache/save their results.Checkpointable process can be integrated with the Sample class and automaticall cache/save their results.https://gitlab.idiap.ch/bob/bob.pipelines/-/issues/3Dask Adaptative scheduling2020-04-17T11:45:21ZTiago de Freitas PereiraDask Adaptative schedulinghttps://distributed.dask.org/en/latest/_modules/distributed/deploy/adaptive.html
ping @andre.anjos @amohammadihttps://distributed.dask.org/en/latest/_modules/distributed/deploy/adaptive.html
ping @andre.anjos @amohammadihttps://gitlab.idiap.ch/bob/bob.paper.pad_mccnns_swirdiff/-/issues/1Things remaining to be done before public release2021-09-24T09:48:07ZGuillaume HEUSCHThings remaining to be done before public releaseHi @ageorge and @dgeissbuhler,
FYI, here is the list of things that needs to be done for the paper package before releasing it.
I tried to make it in the right sequential order:
* [x] implement proper dark frame subtraction in ``bob.i...Hi @ageorge and @dgeissbuhler,
FYI, here is the list of things that needs to be done for the paper package before releasing it.
I tried to make it in the right sequential order:
* [x] implement proper dark frame subtraction in ``bob.io.stream``
* [x] release publicly ``bob.ip.stereo``
* [x] release publicly ``bob.io.stream``
* [x] release publicly ``bob.db.hqwmca`` and ``bob.db.brsu``
* [ ] merge ``add-hqwmca`` branch of ``bob.pad.face`` (https://gitlab.idiap.ch/bob/bob.pad.face/merge_requests/101)
* [x] distribute HQ-WMCA through dataset portal (ideally at http://www.idiap.ch/dataset/hqwmca)
I assigned @dgeissbuhler to it, since most of the stuff involves 'his' packages, but I will still be following that and certainly act on some of the points in the next few weeks/months !David GEISSBUHLERDavid GEISSBUHLERhttps://gitlab.idiap.ch/bob/nightlies/-/issues/57Nighlies are failing2020-02-19T11:36:39ZTiago de Freitas PereiraNighlies are failingHey guys,
Building bob/bob fails on nightlies with that very nice and useless log trace (full of conflicts) https://gitlab.idiap.ch/bob/bob.nightlies/-/jobs/189669/raw.
This is similar to what was happening here, https://gitlab.idiap.ch...Hey guys,
Building bob/bob fails on nightlies with that very nice and useless log trace (full of conflicts) https://gitlab.idiap.ch/bob/bob.nightlies/-/jobs/189669/raw.
This is similar to what was happening here, https://gitlab.idiap.ch/bob/bob.devtools/issues/46.
Any ideas?
Batl project is suffering from the same issue.
https://gitlab.idiap.ch/batl/batl.pad.idiap/pipelines/37505
thanks
ping @ageorgehttps://gitlab.idiap.ch/bob/bob.devtools/-/issues/51Gitlab build badges are broken in readme files2020-04-30T17:35:25ZAmir MOHAMMADIGitlab build badges are broken in readme filesGitlab's badge behavior has changed. We need to update badges in all readme files and also in templates provided here.Gitlab's badge behavior has changed. We need to update badges in all readme files and also in templates provided here.https://gitlab.idiap.ch/bob/bob.devtools/-/issues/50Pipelines fail when tagging a private package2020-02-17T17:11:09ZAmir MOHAMMADIPipelines fail when tagging a private packageSee https://gitlab.idiap.ch/bob/bob.db.hkpu/-/jobs/188846See https://gitlab.idiap.ch/bob/bob.db.hkpu/-/jobs/188846https://gitlab.idiap.ch/bob/bob.learn.linear/-/issues/13Shall we archive this package?2022-02-14T15:24:44ZTiago de Freitas PereiraShall we archive this package?Hi @bob,
I'm moving forward with the redefinition of our pipelines using Dask (https://gitlab.idiap.ch/bob/bob.pipelines and https://gitlab.idiap.ch/bob/bob.bio.base/merge_requests/180) .
It's a good opportunity to think which packages...Hi @bob,
I'm moving forward with the redefinition of our pipelines using Dask (https://gitlab.idiap.ch/bob/bob.pipelines and https://gitlab.idiap.ch/bob/bob.bio.base/merge_requests/180) .
It's a good opportunity to think which packages worth to keep and which not; think about our short time for the maintenance of those packages and in the amount of people interested in doing so
I would like to open the discussion if we should keep this package alive.
In short, this package has the following Linear Trainers:
- bob.learn.linear.PCATrainer: Stable implementation in https://scikit-learn.org/stable/modules/generated/sklearn.decomposition.PCA.html
- bob.learn.linear.FisherLDATrainer: Stable implementation in https://scikit-learn.org/0.16/modules/generated/sklearn.lda.LDA.html
- bob.learn.linear.WCCNTrainer: With a quick search, didn't find a stable implementation of it
- bob.learn.linear.WhiteningTrainer: With a quick search, didn't find a stable implementation of it, BUT it's really simple to have a python implementation of it if necessary
- bob.learn.linear.CGLogRegTrainer: Stable implementation in https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LogisticRegression.html **WARNING** The regularization implemented in scikit-learn is different from ours, but I think it's ok.
- bob.learn.linear.BICTrainer: With a quick search, didn't find a stable implementation of it (does anyone use this one?)
- bob.learn.linear.GFKTrainer: There's no stable implementation of this one, BUT we can archive it, no problem.
Thanks for any feedbackhttps://gitlab.idiap.ch/bob/bob.devtools/-/issues/49Automatically add bob.devtools to the output of bdt gitlab changelog2020-02-18T16:44:20ZAmir MOHAMMADIAutomatically add bob.devtools to the output of bdt gitlab changelogSince successful release of packages is based on releasing bob.devtools first, it makes sense to add it to the output of changelog always.Since successful release of packages is based on releasing bob.devtools first, it makes sense to add it to the output of changelog always.Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.db.swan/-/issues/3Add Idiap only protocols2020-02-14T15:56:36ZAmir MOHAMMADIAdd Idiap only protocolsAmir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob/-/issues/260Job Failed #1876392020-02-13T14:15:40ZAmir MOHAMMADIJob Failed #187639Job [#187639](https://gitlab.idiap.ch/bob/bob/-/jobs/187639) failed for d18d048192ea7c68866777c8a505fdbcf883255f:
```
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {'bob.learn.pytor...Job [#187639](https://gitlab.idiap.ch/bob/bob/-/jobs/187639) failed for d18d048192ea7c68866777c8a505fdbcf883255f:
```
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform osx-64: {'bob.learn.pytorch', 'bob.bio.htface', 'bob.ip.binseg', 'bob.bio.face_ongoing'}
```Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.db.ldhf/-/issues/2Add this to bob and docs repositories2020-02-14T14:56:59ZAmir MOHAMMADIAdd this to bob and docs repositoriesAmir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.db.swan/-/issues/2Add this package to Bob meta packages2020-02-14T14:58:21ZAmir MOHAMMADIAdd this package to Bob meta packagesbob/bob bob/docs bob/bob.nightliesbob/bob bob/docs bob/bob.nightliesAmir MOHAMMADIAmir MOHAMMADI