bob issues
https://gitlab.idiap.ch/groups/bob/-/issues
2022-02-22T17:55:06Z
https://gitlab.idiap.ch/bob/bob.pad.face/-/issues/42
Job Failed #247796
2022-02-22T17:55:06Z
Amir MOHAMMADI
Job Failed #247796
Job [#247796](https://gitlab.idiap.ch/bob/nightlies/-/jobs/247796) failed for 36b8adb9f36c2610132f0f90600063379d15a620:
```
Warning, treated as error:
/scratch/builds/bob/nightlies/miniconda/conda-bld/bob.pad.face_1634852412497/_test_env...
Job [#247796](https://gitlab.idiap.ch/bob/nightlies/-/jobs/247796) failed for 36b8adb9f36c2610132f0f90600063379d15a620:
```
Warning, treated as error:
/scratch/builds/bob/nightlies/miniconda/conda-bld/bob.pad.face_1634852412497/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.8/site-packages/bob/pad/face/config/replay_mobile.py:docstring of bob.pad.face.config.replay_mobile:13:circular inclusion in "include" directive: ../../../../src/bob/bob.pad.face/doc/links.rst < ../../../../src/bob/bob.pad.face/doc/links.rst < ../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.8/site-packages/bob/pad/face/config/replay_attack.py:docstring of bob.pad.face.config.replay_attack
```
Conda-forge migration
https://gitlab.idiap.ch/bob/bob.bio.face/-/issues/65
Citation [WLW04] is not referenced.
2021-10-29T19:43:58Z
Amir MOHAMMADI
Citation [WLW04] is not referenced.
```
Warning, treated as error:
/scratch/builds/bob/nightlies/src/bob/bob.bio.face/doc/references.rst:15:Citation [WLW04] is not referenced.
```
from https://gitlab.idiap.ch/bob/nightlies/-/jobs/247694
```
Warning, treated as error:
/scratch/builds/bob/nightlies/src/bob/bob.bio.face/doc/references.rst:15:Citation [WLW04] is not referenced.
```
from https://gitlab.idiap.ch/bob/nightlies/-/jobs/247694
Conda-forge migration
Amir MOHAMMADI
Amir MOHAMMADI
https://gitlab.idiap.ch/bob/bob.bio.face/-/issues/64
Tests are failing after bob.ip.base modifications
2021-10-29T19:43:58Z
Amir MOHAMMADI
Tests are failing after bob.ip.base modifications
https://gitlab.idiap.ch/bob/bob.bio.face/-/jobs/247103
```
=================================== FAILURES ===================================
___________________________________ test_SQI ___________________________________
def test_SQ...
https://gitlab.idiap.ch/bob/bob.bio.face/-/jobs/247103
```
=================================== FAILURES ===================================
___________________________________ test_SQI ___________________________________
def test_SQI():
face_cropper = bob.bio.face.preprocessor.FaceCrop(
cropped_image_size=(CROPPED_IMAGE_HEIGHT, CROPPED_IMAGE_WIDTH),
cropped_positions={'leye': LEFT_EYE_POS, 'reye': RIGHT_EYE_POS}
)
> preprocessor = bob.bio.face.preprocessor.SelfQuotientImage(
face_cropper = face_cropper
)
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/bob/bio/face/test/test_picklability.py:100:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/bob/bio/face/preprocessor/SelfQuotientImage.py:62: in __init__
self._init_non_pickables()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = SelfQuotientImage(face_cropper=FaceCrop(cropped_image_size=(80, 64),
cropped_positions={'leye': (16, 48),
'reye': (16, 15)}))
def _init_non_pickables(self):
> self.self_quotient = bob.ip.base.SelfQuotientImage(
size_min=self.size, sigma=self.sigma
)
E AttributeError: module 'bob.ip.base' has no attribute 'SelfQuotientImage'
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/bob/bio/face/preprocessor/SelfQuotientImage.py:65: AttributeError
___________________________________ test_sqi ___________________________________
def test_sqi():
# read input
image, annotation = _image(), _annotation()
face_cropper = bob.bio.face.preprocessor.FaceCrop(
cropped_image_size=(CROPPED_IMAGE_HEIGHT, CROPPED_IMAGE_WIDTH),
cropped_positions={'leye': LEFT_EYE_POS, 'reye': RIGHT_EYE_POS}
)
> preprocessor = bob.bio.face.preprocessor.SelfQuotientImage(
face_cropper = face_cropper
)
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/bob/bio/face/test/test_preprocessors.py:310:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/bob/bio/face/preprocessor/SelfQuotientImage.py:62: in __init__
self._init_non_pickables()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = SelfQuotientImage(face_cropper=FaceCrop(cropped_image_size=(80, 64),
cropped_positions={'leye': (16, 48),
'reye': (16, 15)}))
def _init_non_pickables(self):
> self.self_quotient = bob.ip.base.SelfQuotientImage(
size_min=self.size, sigma=self.sigma
)
E AttributeError: module 'bob.ip.base' has no attribute 'SelfQuotientImage'
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.8/site-packages/bob/bio/face/preprocessor/SelfQuotientImage.py:65: AttributeError
```
Conda-forge migration
Tiago de Freitas Pereira
Tiago de Freitas Pereira
https://gitlab.idiap.ch/bob/bob.bio.video/-/issues/21
ERROR: bob.bio.video.test.test_databases.test_new_youtube
2021-10-29T15:34:57Z
Amir MOHAMMADI
ERROR: bob.bio.video.test.test_databases.test_new_youtube
See: https://gitlab.idiap.ch/bob/nightlies/-/jobs/247320
```
======================================================================
ERROR: bob.bio.video.test.test_databases.test_new_youtube
-----------------------------------------------...
See: https://gitlab.idiap.ch/bob/nightlies/-/jobs/247320
```
======================================================================
ERROR: bob.bio.video.test.test_databases.test_new_youtube
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/site-packages/bob/bio/video/test/test_databases.py", line 14, in test_new_youtube
references = database.references()
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/site-packages/bob/bio/video/database/youtube.py", line 269, in references
sampleset = self._make_sample_set(reference_id, suject_id, sample_path)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/site-packages/bob/bio/video/database/youtube.py", line 185, in _make_sample_set
path = os.path.join(self.original_directory, sample_path)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/posixpath.py", line 76, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
-------------------- >> begin captured logging << --------------------
bob.bio.video.database.youtube: WARNING: Invalid or non existant `original_directory`: f{original_directory}.Please, do `bob config set bob.bio.face.lfw.directory PATH` to set the LFW data directory.
bob.extension.download: INFO: Downloading ./bob_data/datasets/youtube_protocols/youtube_protocols-6962cd2e.tar.gz
bob.extension.download: WARNING: Could not download from the https://www.idiap.ch/software/bob/databases/latest/youtube_protocols-6962cd2e.tar.gz url
Traceback (most recent call last):
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/urllib/request.py", line 1354, in do_open
h.request(req.get_method(), req.selector, req.data, headers,
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/http/client.py", line 1256, in request
self._send_request(method, url, body, headers, encode_chunked)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/http/client.py", line 1302, in _send_request
self.endheaders(body, encode_chunked=encode_chunked)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/http/client.py", line 1251, in endheaders
self._send_output(message_body, encode_chunked=encode_chunked)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/http/client.py", line 1011, in _send_output
self.send(msg)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/http/client.py", line 951, in send
self.connect()
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/http/client.py", line 1425, in connect
self.sock = self._context.wrap_socket(self.sock,
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/ssl.py", line 500, in wrap_socket
return self.sslsocket_class._create(
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/ssl.py", line 1040, in _create
self.do_handshake()
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/ssl.py", line 1309, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'www.idiap.ch'. (_ssl.c:1131)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/site-packages/bob/extension/download.py", line 116, in download_file_from_possible_urls
download_file(url, out_file)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/site-packages/bob/extension/download.py", line 93, in download_file
with urlopen(url) as response:
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/urllib/request.py", line 222, in urlopen
return opener.open(url, data, timeout)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/urllib/request.py", line 525, in open
response = self._open(req, data)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/urllib/request.py", line 542, in _open
result = self._call_chain(self.handle_open, protocol, protocol +
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/urllib/request.py", line 502, in _call_chain
result = func(*args)
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/urllib/request.py", line 1397, in https_open
return self.do_open(http.client.HTTPSConnection, req,
File "/Users/gitlab/builds/f6f95b82/0/bob/nightlies/miniconda/conda-bld/bob.bio.video_1634557881182/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold/lib/python3.8/urllib/request.py", line 1357, in do_open
raise URLError(err)
urllib.error.URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'www.idiap.ch'. (_ssl.c:1131)>
bob.extension.download: INFO: Untar/gzip in ./bob_data/datasets/youtube_protocols/youtube_protocols-6962cd2e.tar.gz
```
Conda-forge migration
Amir MOHAMMADI
Amir MOHAMMADI
https://gitlab.idiap.ch/bob/bob.io.video/-/issues/18
AssertionError: distortion(frame[29]) 85.0335 > 80 allowed for format `avi' a...
2021-10-29T15:34:56Z
Amir MOHAMMADI
AssertionError: distortion(frame[29]) 85.0335 > 80 allowed for format `avi' and codec `libx264'
```
FAIL: bob.io.video.test_codec.test_noise_format_mp4_codec_mpeg4
----------------------------------------------------------------------
Traceback (most recent call last):
File "/scratch/builds/bob/nightlies/miniconda/conda-bld/bob....
```
FAIL: bob.io.video.test_codec.test_noise_format_mp4_codec_mpeg4
----------------------------------------------------------------------
Traceback (most recent call last):
File "/scratch/builds/bob/nightlies/miniconda/conda-bld/bob.io.video_1634154089695/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.8/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/scratch/builds/bob/nightlies/miniconda/conda-bld/bob.io.video_1634154089695/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.8/site-packages/bob/io/video/test_codec.py", line 47, in check_format_codec
assert rdist <= maxdist, "distortion(frame[%d]) %g > %g allowed for format `%s' and codec `%s'" % (k, rdist, maxdist, format, codec)
AssertionError: distortion(frame[29]) 85.0335 > 80 allowed for format `avi' and codec `libx264'
```
see https://gitlab.idiap.ch/bob/nightlies/-/jobs/246975
Conda-forge migration
Amir MOHAMMADI
Amir MOHAMMADI
https://gitlab.idiap.ch/bob/bob.extension/-/issues/80
boost python is not found with conda-forge packages
2021-10-29T15:34:56Z
Amir MOHAMMADI
boost python is not found with conda-forge packages
https://gitlab.idiap.ch/bob/bob.extension/-/jobs/245641
```
======================================================================
ERROR: bob.extension.test_boost.test_boost_python_modules
------------------------------------------------...
https://gitlab.idiap.ch/bob/bob.extension/-/jobs/245641
```
======================================================================
ERROR: bob.extension.test_boost.test_boost_python_modules
----------------------------------------------------------------------
Traceback (most recent call last):
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/bob/extension/test_boost.py", line 31, in test_boost_python_modules
directories, libname = b.libconfig(['python'])
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/bob/extension/boost.py", line 173, in libconfig
raise RuntimeError("cannot find required boost module `%s' - make sure boost is installed on `%s' and that this module is named %s on the filesystem" % (module, prefix, ' or '.join(modnames)))
RuntimeError: cannot find required boost module `python' - make sure boost is installed on `/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p' and that this module is named boost_python-mt-py38 or boost_python-py38 or boost_python-mt or boost_python on the filesystem
======================================================================
ERROR: bob.extension.test_boost.test_boost_multiple_modules
----------------------------------------------------------------------
Traceback (most recent call last):
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/bob/extension/test_boost.py", line 40, in test_boost_multiple_modules
directories, libname = b.libconfig(['python', 'system'])
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/bob/extension/boost.py", line 173, in libconfig
raise RuntimeError("cannot find required boost module `%s' - make sure boost is installed on `%s' and that this module is named %s on the filesystem" % (module, prefix, ' or '.join(modnames)))
RuntimeError: cannot find required boost module `python' - make sure boost is installed on `/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p' and that this module is named boost_python-mt-py38 or boost_python-py38 or boost_python-mt or boost_python on the filesystem
======================================================================
ERROR: bob.extension.test_boost.test_common_prefix
----------------------------------------------------------------------
Traceback (most recent call last):
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/bob/extension/test_boost.py", line 51, in test_common_prefix
directories, libname = b.libconfig(['python', 'system'])
File "/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/bob/extension/boost.py", line 173, in libconfig
raise RuntimeError("cannot find required boost module `%s' - make sure boost is installed on `%s' and that this module is named %s on the filesystem" % (module, prefix, ' or '.join(modnames)))
RuntimeError: cannot find required boost module `python' - make sure boost is installed on `/scratch/builds/bob/bob.extension/miniconda/conda-bld/bob.extension_1633333747012/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p' and that this module is named boost_python-mt-py38 or boost_python-py38 or boost_python-mt or boost_python on the filesystem
```
Conda-forge migration
https://gitlab.idiap.ch/bob/bob.devtools/-/issues/84
Python-only CI pipeline is required
2021-10-29T15:34:56Z
Amir MOHAMMADI
Python-only CI pipeline is required
Some packages like bob/bob.buildout> don't need conda and it's easier to maintain using pip only.
Looking at https://github.com/pypa/ would help.
related: https://gitlab.idiap.ch/bob/bob.buildout/-/issues/28
Some packages like bob/bob.buildout> don't need conda and it's easier to maintain using pip only.
Looking at https://github.com/pypa/ would help.
related: https://gitlab.idiap.ch/bob/bob.buildout/-/issues/28
Conda-forge migration
André Anjos
André Anjos
https://gitlab.idiap.ch/bob/bob.devtools/-/issues/80
Switch to mamba and mambabuild
2021-10-29T15:34:56Z
Amir MOHAMMADI
Switch to mamba and mambabuild
Because Speeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeed
Because Speeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeed
Conda-forge migration
Amir MOHAMMADI
Amir MOHAMMADI
https://gitlab.idiap.ch/bob/bob.pipelines/-/issues/36
Job Failed #247368
2021-10-18T15:42:20Z
Amir MOHAMMADI
Job Failed #247368
Job [#247368](https://gitlab.idiap.ch/bob/bob.pipelines/-/jobs/247368) failed for 3dab034b96d96a9f95435639b9c892171fb50ac4:
```
+ sphinx-build -aEW /scratch/builds/bob/bob.pipelines/conda/../doc /scratch/builds/bob/bob.pipelines/conda/....
Job [#247368](https://gitlab.idiap.ch/bob/bob.pipelines/-/jobs/247368) failed for 3dab034b96d96a9f95435639b9c892171fb50ac4:
```
+ sphinx-build -aEW /scratch/builds/bob/bob.pipelines/conda/../doc /scratch/builds/bob/bob.pipelines/conda/../sphinx
Running Sphinx v4.2.0
Adding intersphinx source for `python': https://docs.python.org/3.8/
Adding intersphinx source for `numpy': https://numpy.org/doc/1.21/
Adding intersphinx source for `setuptools': https://setuptools.readthedocs.io/en/latest/
Adding intersphinx source for `scikit-learn': https://scikit-learn.org/stable/
Adding intersphinx source for `dask': https://docs.dask.org/en/latest/
Adding intersphinx source for `dask-jobqueue': https://jobqueue.dask.org/en/latest/
Adding intersphinx source for `distributed': https://distributed.dask.org/en/latest/
Adding intersphinx source for `xarray': https://xarray.pydata.org/en/stable/
Found documentation for bob.extension on http://www.idiap.ch/software/bob/docs/bob/bob.extension/master/; adding intersphinx source
Found documentation for bob.io.base on http://www.idiap.ch/software/bob/docs/bob/bob.io.base/master/; adding intersphinx source
Found documentation for bob.db.base on http://www.idiap.ch/software/bob/docs/bob/bob.db.base/master/; adding intersphinx source
[autosummary] generating autosummary for: checkpoint.rst, dask.rst, index.rst, py_api.rst, sample.rst, xarray.rst
loading intersphinx inventory from https://docs.python.org/3.8/objects.inv...
loading intersphinx inventory from https://numpy.org/doc/1.21/objects.inv...
loading intersphinx inventory from https://setuptools.readthedocs.io/en/latest/objects.inv...
loading intersphinx inventory from https://scikit-learn.org/stable/objects.inv...
loading intersphinx inventory from https://docs.dask.org/en/latest/objects.inv...
loading intersphinx inventory from https://jobqueue.dask.org/en/latest/objects.inv...
loading intersphinx inventory from https://distributed.dask.org/en/latest/objects.inv...
loading intersphinx inventory from https://xarray.pydata.org/en/stable/objects.inv...
loading intersphinx inventory from http://www.idiap.ch/software/bob/docs/bob/bob.extension/master/objects.inv...
loading intersphinx inventory from http://www.idiap.ch/software/bob/docs/bob/bob.io.base/master/objects.inv...
loading intersphinx inventory from http://www.idiap.ch/software/bob/docs/bob/bob.db.base/master/objects.inv...
intersphinx inventory has moved: https://setuptools.readthedocs.io/en/latest/objects.inv -> https://setuptools.pypa.io/en/latest/objects.inv
building [mo]: all of 0 po files
building [html]: all source files
updating environment: [new config] 6 added, 0 changed, 0 removed
reading sources... [ 16%] checkpoint
reading sources... [ 33%] dask
reading sources... [ 50%] index
reading sources... [ 66%] py_api
reading sources... [ 83%] sample
reading sources... [100%] xarray
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 16%] checkpoint
writing output... [ 33%] dask
writing output... [ 50%] index
writing output... [ 66%] py_api
writing output... [ 83%] sample
writing output... [100%] xarray
Warning, treated as error:
/scratch/builds/bob/bob.pipelines/doc/dask.rst:101:unknown document: dask:setup/adaptive
```
Conda-forge migration
Amir MOHAMMADI
Amir MOHAMMADI
https://gitlab.idiap.ch/bob/bob.ip.facedetect/-/issues/11
*** glibc detected *** python: free(): invalid pointer: 0x00007f9e2eaf2840 ***
2021-10-14T15:55:59Z
Amir MOHAMMADI
*** glibc detected *** python: free(): invalid pointer: 0x00007f9e2eaf2840 ***
```
+ nosetests --with-coverage --cover-package=bob.ip.facedetect -sv bob.ip.facedetect
bob.ip.facedetect.tests.test_cpp.test_bbx ... ok
bob.ip.facedetect.tests.test_cpp.test_mirror ... ok
bob.ip.facedetect.tests.test_cpp.test_pruning .....
```
+ nosetests --with-coverage --cover-package=bob.ip.facedetect -sv bob.ip.facedetect
bob.ip.facedetect.tests.test_cpp.test_bbx ... ok
bob.ip.facedetect.tests.test_cpp.test_mirror ... ok
bob.ip.facedetect.tests.test_cpp.test_pruning ... ok
bob.ip.facedetect.tests.test_features.test01_single_LBP ... ok
bob.ip.facedetect.tests.test_features.test02_multiple_LBP ... ok
MTCNN should annotate one face correctly. ... *** glibc detected *** python: free(): invalid pointer: 0x00007f9e2eaf2840 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x75e5e)[0x7f9e38400e5e]
/lib64/libc.so.6(+0x78cad)[0x7f9e38403cad]
lib/python3.8/site-packages/bob/core/../../../../libblitz.so.0(_ZNSt6locale5_ImplD1Ev+0x3a)[0x7f9e2ea91812]
lib/python3.8/site-packages/bob/core/../../../../libstdc++.so.6(+0xb925a)[0x7f9e2e8ee25a]
lib/python3.8/site-packages/tensorflow/python/_pywrap_tensorflow_internal.so(_ZN10tensorflow22python_op_gen_internal17AttrValueToPythonERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9AttrValueES8_+0x28f)[0x7f9cd54b0a6f]
lib/python3.8/site-packages/tensorflow/python/_pywrap_tensorflow_internal.so(+0x245b911)[0x7f9cd54ac911]
lib/python3.8/site-packages/tensorflow/python/_pywrap_tensorflow_internal.so(+0x245d471)[0x7f9cd54ae471]
lib/python3.8/site-packages/tensorflow/python/_pywrap_tensorflow_internal.so(_ZN10tensorflow17GetPythonWrappersB5cxx11EPKcm+0x113)[0x7f9cd54aeaf3]
lib/python3.8/site-packages/tensorflow/python/framework/_pywrap_python_op_gen.so(+0xbe09)[0x7f9d9db06e09]
lib/python3.8/site-packages/tensorflow/python/framework/_pywrap_python_op_gen.so(+0x13834)[0x7f9d9db0e834]
python(PyCFunction_Call+0x54)[0x55cd1186bc64]
python(_PyObject_MakeTpCall+0x31e)[0x55cd1187b0fe]
python(+0x184665)[0x55cd118c4665]
python(_PyEval_EvalFrameDefault+0x6088)[0x55cd11912498]
python(_PyFunction_Vectorcall+0x1a6)[0x55cd118f01b6]
python(+0x13b5f4)[0x55cd1187b5f4]
python(+0x184640)[0x55cd118c4640]
python(_PyEval_EvalFrameDefault+0x6088)[0x55cd11912498]
python(_PyEval_EvalCodeWithName+0x2c3)[0x55cd118eefa3]
python(PyEval_EvalCodeEx+0x39)[0x55cd118f0009]
python(PyEval_EvalCode+0x1b)[0x55cd11993cfb]
python(+0x27348e)[0x55cd119b348e]
python(+0x128b2b)[0x55cd11868b2b]
python(PyVectorcall_Call+0x6e)[0x55cd1186bb6e]
python(_PyEval_EvalFrameDefault+0x5cd9)[0x55cd119120e9]
python(_PyEval_EvalCodeWithName+0x2c3)[0x55cd118eefa3]
python(_PyFunction_Vectorcall+0x378)[0x55cd118f0388]
python(+0x13b5f4)[0x55cd1187b5f4]
python(+0x184640)[0x55cd118c4640]
python(_PyEval_EvalFrameDefault+0x6088)[0x55cd11912498]
python(_PyFunction_Vectorcall+0x1a6)[0x55cd118f01b6]
python(+0x13b5f4)[0x55cd1187b5f4]
python(+0x184640)[0x55cd118c4640]
python(_PyEval_EvalFrameDefault+0x5dd4)[0x55cd119121e4]
python(_PyFunction_Vectorcall+0x1a6)[0x55cd118f01b6]
python(+0x13b5f4)[0x55cd1187b5f4]
python(+0x184640)[0x55cd118c4640]
python(_PyEval_EvalFrameDefault+0x59d4)[0x55cd11911de4]
python(_PyFunction_Vectorcall+0x1a6)[0x55cd118f01b6]
python(+0x13b5f4)[0x55cd1187b5f4]
python(+0x184640)[0x55cd118c4640]
python(_PyEval_EvalFrameDefault+0x59d4)[0x55cd11911de4]
python(_PyFunction_Vectorcall+0x1a6)[0x55cd118f01b6]
python(+0x13e380)[0x55cd1187e380]
python(_PyObject_CallMethodIdObjArgs+0x25f)[0x55cd118f96cf]
python(PyImport_ImportModuleLevelObject+0x7e9)[0x55cd1184ff09]
python(+0x1d4088)[0x55cd11914088]
python(PyCFunction_Call+0x54)[0x55cd1186bc64]
python(_PyEval_EvalFrameDefault+0x5cd9)[0x55cd119120e9]
python(_PyEval_EvalCodeWithName+0x2c3)[0x55cd118eefa3]
python(_PyFunction_Vectorcall+0x378)[0x55cd118f0388]
python(+0x13b5f4)[0x55cd1187b5f4]
python(+0x184640)[0x55cd118c4640]
python(_PyEval_EvalFrameDefault+0x59d4)[0x55cd11911de4]
python(_PyEval_EvalCodeWithName+0x2c3)[0x55cd118eefa3]
python(_PyFunction_Vectorcall+0x378)[0x55cd118f0388]
python(+0x13e380)[0x55cd1187e380]
python(_PyObject_CallMethodIdObjArgs+0x25f)[0x55cd118f96cf]
python(PyImport_ImportModuleLevelObject+0x91c)[0x55cd1185003c]
python(_PyEval_EvalFrameDefault+0x30ff)[0x55cd1190f50f]
python(_PyEval_EvalCodeWithName+0x2c3)[0x55cd118eefa3]
python(PyEval_EvalCodeEx+0x39)[0x55cd118f0009]
python(PyEval_EvalCode+0x1b)[0x55cd11993cfb]
```
see https://gitlab.idiap.ch/bob/bob.ip.facedetect/-/jobs/246036/raw
Conda-forge migration
https://gitlab.idiap.ch/bob/bob.io.audio/-/issues/8
conda-forge sox package does not have run_exports
2021-10-06T12:59:37Z
Amir MOHAMMADI
conda-forge sox package does not have run_exports
being fixed in https://github.com/conda-forge/sox-feedstock/pull/20
being fixed in https://github.com/conda-forge/sox-feedstock/pull/20
Conda-forge migration
Amir MOHAMMADI
Amir MOHAMMADI
https://gitlab.idiap.ch/bob/bob/-/issues/270
Problem installing bob with conda
2021-10-04T11:50:41Z
Greg Burman
Problem installing bob with conda
I've tried installing bob using the install instructions provided: https://www.idiap.ch/software/bob/docs/bob/docs/stable/install.html
However, when I run the `conda create` command under step 3) I get the following error:
```
$ conda ...
I've tried installing bob using the install instructions provided: https://www.idiap.ch/software/bob/docs/bob/docs/stable/install.html
However, when I run the `conda create` command under step 3) I get the following error:
```
$ conda create --name bob_env1 --override-channels -c https://www.idiap.ch/software/bob/conda -c defaults python=3 bob.io.image bob.bio.face
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: /
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Package bob.io.image conflicts for:
bob.bio.face -> bob.io.image[version='>=2.4.1,<3.0a0|>=2.4.2,<3.0a0|>=2.4.3,<3.0a0|>=2.4.4,<3.0a0|>=2.4.5,<3.0a0|>=2.4.6,<3.0a0|>=2.5.0,<3.0a0']
bob.io.image
Package python conflicts for:
python=3
bob.bio.face -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
bob.bio.face -> matplotlib[version='>=3.3.2,<4.0a0'] -> python[version='>=3.5,<3.6.0a0|>=3.9,<3.10.0a0']
Package _libgcc_mutex conflicts for:
python=3 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='*|0.1',build=main]
bob.io.image -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='*|0.1',build=main]The following specifications were found to be incompatible with your system:
- feature:/linux-64::__glibc==2.33=0
- feature:|@/linux-64::__glibc==2.33=0
- python=3 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
Your installed version is: 2.33
```
It looks like there are several package conflicts for `bob.io.image` and `bob.bio.face`.
I have successfully managed to install bob using the Installation instructions several times before, so this issue seems to be pretty new.
Conda-forge migration