bob issueshttps://gitlab.idiap.ch/groups/bob/-/issues2021-07-09T12:30:44Zhttps://gitlab.idiap.ch/bob/bob.bio.face/-/issues/47Checkpoint cropped face images in .png files (by default) instead of .h5 files2021-07-09T12:30:44ZAmir MOHAMMADICheckpoint cropped face images in .png files (by default) instead of .h5 filesThe checkpoint files are basically .png images but saving them in .h5 files makes them inaccessible for opening and viewing.The checkpoint files are basically .png images but saving them in .h5 files makes them inaccessible for opening and viewing.Bob 9.0.0Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.face/-/issues/43Tests takes around 3 hours to finish and use more than 16GB of memory2022-03-07T16:32:59ZAmir MOHAMMADITests takes around 3 hours to finish and use more than 16GB of memory@tiago.pereira these new tests are really stopping me to do my work.
I am testing Bob packages on a new machine with 16 GB of RAM, and it crashes my machine.
Could you please make these unit tests more realistic?@tiago.pereira these new tests are really stopping me to do my work.
I am testing Bob packages on a new machine with 16 GB of RAM, and it crashes my machine.
Could you please make these unit tests more realistic?Bob 9.0.0Tiago de Freitas PereiraTiago de Freitas Pereirahttps://gitlab.idiap.ch/bob/bob/-/issues/266Bob 9.0.0rc12021-07-07T07:34:13ZTiago de Freitas PereiraBob 9.0.0rc1Hi guys,
Since we are in a consistent sequence of green nightlies, I think we can safely have a release candidate of Bob with the new stuff.
I would like to pin everything on `bob.nightlies` as `rc1` and release it on our stable channe...Hi guys,
Since we are in a consistent sequence of green nightlies, I think we can safely have a release candidate of Bob with the new stuff.
I would like to pin everything on `bob.nightlies` as `rc1` and release it on our stable channel.
I would appreciate your input on it.
ThanksBob 9.0.0https://gitlab.idiap.ch/bob/bob.pad.face/-/issues/39User Guide and Documentation2021-02-15T12:53:56ZTiago de Freitas PereiraUser Guide and DocumentationHi @ydayer,
Could you please do a "pass" in the documentation of this package, to remove traces from `spoof.py`?
ThanksHi @ydayer,
Could you please do a "pass" in the documentation of this package, to remove traces from `spoof.py`?
ThanksBob 9.0.0https://gitlab.idiap.ch/bob/bob/-/issues/265Several tests failing on bob/bob2020-12-18T12:35:36ZTiago de Freitas PereiraSeveral tests failing on bob/bobSome nosetests are failing one bob/bob
https://gitlab.idiap.ch/bob/nightlies/-/jobs/220347Some nosetests are failing one bob/bob
https://gitlab.idiap.ch/bob/nightlies/-/jobs/220347Bob 9.0.0https://gitlab.idiap.ch/bob/bob/-/issues/264[black]2022-05-10T09:48:44ZTiago de Freitas Pereira[black]I would like to `[black]` all packages inside of `bob.nightlies`, so we have standard formating.
Any objection?
ping @amohammadi @ydayer @andre.anjosI would like to `[black]` all packages inside of `bob.nightlies`, so we have standard formating.
Any objection?
ping @amohammadi @ydayer @andre.anjosBob 9.0.0https://gitlab.idiap.ch/bob/bob.pipelines/-/issues/30CSVBaseSampleLoader does not support delayed metadata2020-12-13T11:51:16ZAmir MOHAMMADICSVBaseSampleLoader does not support delayed metadataSince DelayedSample supports delayed metadata as well, I think it's a good idea that CSVBaseSampleLoader delays the metadata loading as well.
This is really important as when we query the database, we may want to load the annotations in ...Since DelayedSample supports delayed metadata as well, I think it's a good idea that CSVBaseSampleLoader delays the metadata loading as well.
This is really important as when we query the database, we may want to load the annotations in a delayed manner because they might not exist and annotaitons might not be used. see https://gitlab.idiap.ch/bob/bob.pipelines/-/blob/e2459dc5784045261ccc25df204a852bb527239e/bob/pipelines/datasets/sample_loaders.py#L60Bob 9.0.0Tiago de Freitas PereiraTiago de Freitas Pereirahttps://gitlab.idiap.ch/bob/bob.pad.base/-/issues/37Follow-up from "[dask] Make vanilla-pad work properlly with dask"2022-06-02T15:48:19ZAmir MOHAMMADIFollow-up from "[dask] Make vanilla-pad work properlly with dask"The following discussion from !81 should be addressed:
- [ ] @amohammadi started a [discussion](https://gitlab.idiap.ch/bob/bob.pad.base/-/merge_requests/81#note_59236):
> This should be `ToDaskBag` no? Anyhow I prefer if this was...The following discussion from !81 should be addressed:
- [ ] @amohammadi started a [discussion](https://gitlab.idiap.ch/bob/bob.pad.base/-/merge_requests/81#note_59236):
> This should be `ToDaskBag` no? Anyhow I prefer if this was actually a click option.Bob 9.0.0Tiago de Freitas PereiraTiago de Freitas Pereirahttps://gitlab.idiap.ch/bob/bob.pad.base/-/issues/36One-Shot vulnerability analysis2021-06-16T09:05:39ZTiago de Freitas PereiraOne-Shot vulnerability analysisHi,
Today the workflow to do vulnerability analysis is:
1. To have a database with two protocols, one licit (zero-effort impostors vs bonafides) and one called spoof (presentation attacks vs bonafides).
2. run `bob bio pipelines vanill...Hi,
Today the workflow to do vulnerability analysis is:
1. To have a database with two protocols, one licit (zero-effort impostors vs bonafides) and one called spoof (presentation attacks vs bonafides).
2. run `bob bio pipelines vanilla-biometrics licit....`
3. run `bob bio pipelines vanilla-biometrics spoof....`
4. run `bob pad vulnerability .... {licit,spoof}/scores-{dev,eval}`
I understand the reasons why this was made like this, but now with `bob bio pipelines vanilla-biometrics --write-metadata ....` we can have score files where metadata is available:
```
probe_key,probe_path,probe_reference_id,bio_ref_path,bio_ref_reference_id,is_bonafide,score
devel/real/client003_session01_webcam_authenticate_adverse_1,devel/real/client003_session01_webcam_authenticate_adverse_1,3,3,3,1,0.9919710755348206
```
Therefore, we can afford to have one protocol containing both `zero-effort impostors` and `presentation attack` probes, and the job of the tools inside of `bob pad vulnerability` would take care of selecting these two types of probes and do the correct analysis.
I think this is wiser.
What do you think @amohammadi @ydayer?
ThanksBob 9.0.0Yannick DAYERYannick DAYERhttps://gitlab.idiap.ch/bob/bob.db.oulunpu/-/issues/4Nightlies stuck on this one2021-04-12T10:05:55ZTiago de Freitas PereiraNightlies stuck on this oneHi guys,
We need to make this package compatible with the new `bob.bio.video` to get this green.Hi guys,
We need to make this package compatible with the new `bob.bio.video` to get this green.Bob 9.0.0Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.pad.face/-/issues/38Follow-up from "Porting to dask pipelines"2022-03-03T17:36:30ZTiago de Freitas PereiraFollow-up from "Porting to dask pipelines"The following discussion from !110 should be addressed:
- [ ] @tiago.pereira started a [discussion](https://gitlab.idiap.ch/bob/bob.pad.face/-/merge_requests/110#note_58850): (+2 comments)
> Hey, does it make sense to keep those n...The following discussion from !110 should be addressed:
- [ ] @tiago.pereira started a [discussion](https://gitlab.idiap.ch/bob/bob.pad.face/-/merge_requests/110#note_58850): (+2 comments)
> Hey, does it make sense to keep those names `preprocessor`, `extractor`?
>
> ThanksBob 9.0.0Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.pipelines/-/issues/29jman (gridtk) like interface for submitting dask jobs2024-03-21T10:21:20ZAmir MOHAMMADIjman (gridtk) like interface for submitting dask jobsWe need:
1. A command that automatically creates a dask client for us to be used for SGE submission.
2. A history of the commands that were executed.
3. An automatic tracking of dask logs.We need:
1. A command that automatically creates a dask client for us to be used for SGE submission.
2. A history of the commands that were executed.
3. An automatic tracking of dask logs.Bob 9.0.0https://gitlab.idiap.ch/bob/bob.bio.base/-/issues/150There is no need to create yet another database abstract class2020-12-07T13:24:55ZAmir MOHAMMADIThere is no need to create yet another database abstract classI can see that the new pipelines could very well use our old database interfaces and adding another class is just going to create too many layers for us IMHO.I can see that the new pipelines could very well use our old database interfaces and adding another class is just going to create too many layers for us IMHO.Bob 9.0.0https://gitlab.idiap.ch/bob/bob.pipelines/-/issues/28Logging level does not propogate to workers2020-11-27T18:16:28ZAmir MOHAMMADILogging level does not propogate to workersWhen I run a script in verbose mode with dask, the debug logs are not printed in worker logs.When I run a script in verbose mode with dask, the debug logs are not printed in worker logs.Bob 9.0.0Tiago de Freitas PereiraTiago de Freitas Pereirahttps://gitlab.idiap.ch/bob/nightlies/-/issues/58Job Failed #219230 bob.bio.video builds conflict in the nightlies only2020-12-01T11:08:26ZAmir MOHAMMADIJob Failed #219230 bob.bio.video builds conflict in the nightlies onlyJob [#219230](https://gitlab.idiap.ch/bob/nightlies/-/jobs/219230) failed for 363d726087f9b9c2b52992d71517c183ef660a45:
```
================================================================================
Building bob/bob.bio.video@maste...Job [#219230](https://gitlab.idiap.ch/bob/nightlies/-/jobs/219230) failed for 363d726087f9b9c2b52992d71517c183ef660a45:
```
================================================================================
Building bob/bob.bio.video@master (57/75)
================================================================================
INFO:bob.devtools.scripts.ci@2020-11-26 23:48:45,587: Cloning "bob/bob.bio.video", branch "master" (depth=1)...
INFO:bob.devtools.scripts.ci@2020-11-26 23:48:48,463: Conda build configuration file: /scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/bob/devtools/data/conda_build_config.yaml
INFO:bob.devtools.scripts.ci@2020-11-26 23:48:48,464: Conda build recipe-append file: /scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/bob/devtools/data/recipe_append.yaml
INFO:bob.devtools.scripts.build@2020-11-26 23:48:48,471: Using the following channels during (potential) build:
- http://www.idiap.ch/software/bob/conda/label/beta
- http://www.idiap.ch/software/bob/conda
- defaults
INFO:bob.devtools.scripts.build@2020-11-26 23:48:48,471: Uploading resulting package to: http://www.idiap.ch/software/bob/conda/label/beta
INFO:bob.devtools.bootstrap@2020-11-26 23:48:49,332: environ["MATPLOTLIBRC"] = /scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/bob/devtools/data
INFO:bob.devtools.bootstrap@2020-11-26 23:48:49,332: environ["DOCSERVER"] = http://www.idiap.ch
INFO:bob.devtools.bootstrap@2020-11-26 23:48:49,332: environ["BOB_DOCUMENTATION_SERVER"] = http://www.idiap.ch/software/bob/docs/bob/%(name)s/master/
INFO:bob.devtools.bootstrap@2020-11-26 23:48:49,332: environ["NOSE_EVAL_ATTR"] = not slow
INFO:bob.devtools.bootstrap@2020-11-26 23:48:49,332: environ["PYTEST_ADDOPTS"] = -m 'not slow'
INFO:bob.devtools.bootstrap@2020-11-26 23:48:49,333: environ["BOB_PACKAGE_VERSION"] = 3.4.7b0
/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/environ.py:452: UserWarning: The environment variable 'DOCSERVER' is being passed through with value 'http://www.idiap.ch'. If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
UserWarning
/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/environ.py:452: UserWarning: The environment variable 'NOSE_EVAL_ATTR' is being passed through with value 'not slow'. If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
UserWarning
/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/environ.py:452: UserWarning: The environment variable 'PYTEST_ADDOPTS' is being passed through with value '-m 'not slow''. If you are splitting build and test phases with --no-test, please ensure that this value is also set similarly at test time.
UserWarning
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working...
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
Traceback (most recent call last):
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/environ.py", line 802, in get_install_actions
actions = install_actions(prefix, index, specs, force=True)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
return f(*args, **kwds)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/plan.py", line 474, in install_actions
txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/core/solve.py", line 117, in solve_for_transaction
should_retry_solve)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/core/solve.py", line 158, in solve_for_diff
force_remove, should_retry_solve)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/core/solve.py", line 281, in solve_final_state
ssc = self._run_sat(ssc)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
return f(*args, **kwds)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/core/solve.py", line 808, in _run_sat
should_retry_solve=ssc.should_retry_solve
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
return f(*args, **kwds)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/resolve.py", line 1318, in solve
self.find_conflicts(specs, specs_to_add, history_specs)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda/resolve.py", line 351, in find_conflicts
raise UnsatisfiableError(bad_deps, strict=strict_channel_priority)
conda.exceptions.UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Package python conflicts for:
setuptools=50.3.0 -> certifi[version='>=2016.9.26'] -> python
h5py=2.10.0 -> python[version='>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0']
bob.io.video -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|3.4.*']
bob.extension -> click[version='>=7.1.2,<8.0a0'] -> python[version='>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
setuptools=50.3.0 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0']
bob.io.base -> boost[version='>=1.73.0,<1.73.1.0a0'] -> python[version='>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
bob.bio.face -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
python=3.7
bob.extension -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|3.4.*']
bob.bio.face -> scikit-image[version='>=0.17.2,<1.0a0'] -> python[version='>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
h5py=2.10.0 -> six -> python[version='>=3.9,<3.10.0a0']
scikit-learn=0.23.2 -> joblib[version='>=0.11'] -> python[version='>=3.5|>=3.6']
bob.bio.base -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
scikit-learn=0.23.2 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
bob.bio.base -> scipy -> python[version='>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
bob.io.base -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|3.4.*']
bob.io.video -> boost[version='>=1.73.0,<1.73.1.0a0'] -> python[version='>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
Package bob.extension conflicts for:
bob.bio.face -> bob.blitz[version='>=2.0.20,<3.0a0'] -> bob.extension[version='>=3.1.2,<4.0a0|>=5.0.0,<6.0a0']
bob.io.base -> bob.extension[version='>=2.5.0,<3.0a0|>=3.1.0,<4.0a0|>=3.1.1,<4.0a0|>=3.1.2,<4.0a0|>=3.2.0,<4.0a0|>=4.0.0,<5.0a0|>=5.0.0,<6.0a0|>=5.0.1,<6.0a0|>=5.0.2b.0,<6.0a0']
bob.bio.face -> bob.extension[version='>=2.5.0,<3.0a0|>=3.1.0,<4.0a0|>=3.1.1,<4.0a0|>=3.2.0,<4.0a0|>=4.0.0,<5.0a0|>=5.0.1,<6.0a0|>=5.0.2b.0,<6.0a0']
bob.extension
bob.io.video -> bob.blitz[version='>=2.0.20,<3.0a0'] -> bob.extension[version='>=3.1.2,<4.0a0|>=5.0.0,<6.0a0']
bob.io.video -> bob.extension[version='>2.0.4|>=2.5.0,<3.0a0|>=3.1.0,<4.0a0|>=3.1.1,<4.0a0|>=3.2.0,<4.0a0|>=4.0.0,<5.0a0|>=5.0.1,<6.0a0|>=5.0.2b.0,<6.0a0']
bob.bio.base -> bob.blitz[version='>=2.0.20,<3.0a0'] -> bob.extension[version='>=3.1.2,<4.0a0|>=5.0.0,<6.0a0']
bob.bio.base -> bob.extension[version='>=2.5.0,<3.0a0|>=3.1.0,<4.0a0|>=3.1.1,<4.0a0|>=3.2.0,<4.0a0|>=4.0.0,<5.0a0|>=5.0.1,<6.0a0|>=5.0.2b.0,<6.0a0']
Package h5py conflicts for:
bob.bio.base -> bob.pipelines -> h5py[version='>=2.10.0,<3.0a0|>=2.8.0,<3.0a0']
h5py=2.10.0
Package hdf5 conflicts for:
h5py=2.10.0 -> hdf5[version='>=1.10.4,<1.10.5.0a0|>=1.10.6,<1.10.7.0a0']
bob.bio.base -> bob.io.base[version='>=3.0.10b.0,<4.0a0'] -> hdf5[version='>=1.10.1,<1.10.2.0a0|>=1.10.2,<1.10.3.0a0|>=1.10.6,<1.10.7.0a0']
bob.io.base -> hdf5[version='1.8.17|1.8.17.*|>=1.10.1,<1.10.2.0a0|>=1.10.2,<1.10.3.0a0|>=1.10.6,<1.10.7.0a0']
bob.bio.face -> bob.io.base[version='>=3.0.10b.0,<4.0a0'] -> hdf5[version='>=1.10.1,<1.10.2.0a0|>=1.10.2,<1.10.3.0a0|>=1.10.6,<1.10.7.0a0']
bob.io.video -> bob.io.base[version='>=3.0.10b.0,<4.0a0'] -> hdf5[version='1.8.17|1.8.17.*|>=1.10.1,<1.10.2.0a0|>=1.10.2,<1.10.3.0a0|>=1.10.6,<1.10.7.0a0']
Package numpy conflicts for:
numpy=1.16
bob.bio.base -> numpy[version='<1.18']
bob.io.base -> numpy[version='1.12.*|1.13.*|>=1.14.5,<2.0a0|>=1.15.4,<2.0a0|>=1.16.6,<2.0a0|>=1.17.4,<2.0a0|>=1.9.3,<2.0a0']
h5py=2.10.0 -> numpy[version='>=1.11.3,<2.0a0|>=1.14.6,<2.0a0']
bob.io.video -> numpy[version='1.12.*|1.13.*|>=1.14.5,<2.0a0|>=1.15.4,<2.0a0|>=1.16.6,<2.0a0|>=1.9.3,<2.0a0']
scikit-learn=0.23.2 -> scipy -> numpy[version='>=1.11.3,<2.0a0|>=1.15.1,<2.0a0|>=1.9.3,<2.0a0']
bob.io.base -> bob.blitz -> numpy=1.11
bob.bio.face -> bob.blitz[version='>=2.0.23b.0,<3.0a0'] -> numpy[version='<1.18|>=1.14.6,<2.0a0|>=1.16.6,<2.0a0|>=1.17.4,<2.0a0|>=1.15.4,<2.0a0|>=1.14.5,<2.0a0|>=1.9.3,<2.0a0']
scikit-learn=0.23.2 -> numpy[version='>=1.14.6,<2.0a0']
bob.io.video -> bob.blitz[version='>=2.0.23b.0,<3.0a0'] -> numpy[version='1.11.*|>=1.17.4,<2.0a0']
bob.bio.base -> bob.blitz[version='>=2.0.23b.0,<3.0a0'] -> numpy[version='>=1.11.3,<2.0a0|>=1.14.6,<2.0a0|>=1.16.6,<2.0a0|>=1.17.4,<2.0a0|>=1.19.2,<2.0a0|>=1.15.1,<2.0a0|>=1.9.3,<2.0a0|>=1.15.4,<2.0a0|>=1.14.5,<2.0a0']
Package _libgcc_mutex conflicts for:
numpy=1.16 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex=[build=main]
h5py=2.10.0 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex=[build=main]
bob.io.video -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex=[build=main]
scikit-learn=0.23.2 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex=[build=main]
python=3.7 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex=[build=main]
bob.io.base -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex=[build=main]
Package bob.io.base conflicts for:
bob.bio.face -> bob.measure[version='>=4.2.0,<5.0a0'] -> bob.io.base[version='>=3.0.8,<4.0a0']
bob.bio.face -> bob.io.base[version='>=3.0.10b.0,<4.0a0|>=3.0.9,<4.0a0|>=3.0.7,<4.0a0|>=3.0.6,<4.0a0|>=3.0.5,<4.0a0|>=3.0.4,<4.0a0|>=3.0.3,<4.0a0']
bob.io.base
bob.bio.base -> bob.io.base[version='>=3.0.10b.0,<4.0a0|>=3.0.9,<4.0a0|>=3.0.7,<4.0a0|>=3.0.6,<4.0a0|>=3.0.5,<4.0a0|>=3.0.4,<4.0a0|>=3.0.3,<4.0a0']
bob.io.video -> bob.io.base[version='>=3.0.10b.0,<4.0a0|>=3.0.9,<4.0a0|>=3.0.7,<4.0a0|>=3.0.6,<4.0a0|>=3.0.5,<4.0a0|>=3.0.4,<4.0a0|>=3.0.3,<4.0a0']
bob.bio.base -> bob.measure[version='>=4.2.0,<5.0a0'] -> bob.io.base[version='>=3.0.8,<4.0a0']
Package setuptools conflicts for:
bob.extension -> setuptools
bob.io.base -> setuptools
bob.io.video -> setuptools
bob.bio.base -> setuptools
bob.bio.face -> setuptools
setuptools=50.3.0
scikit-learn=0.23.2 -> joblib[version='>=0.11'] -> setuptools
Package ca-certificates conflicts for:
bob.bio.face -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
bob.extension -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
bob.io.video -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
bob.io.base -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
bob.bio.base -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
python=3.7 -> openssl[version='>=1.1.1g,<1.1.2a'] -> ca-certificates
Package numpy-base conflicts for:
numpy=1.16 -> mkl_fft[version='>=1.0.6,<2.0a0'] -> numpy-base[version='>=1.0.2,<2.0a0|>=1.0.6,<2.0a0']
numpy=1.16 -> numpy-base[version='1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.2|1.16.2|1.16.2|1.16.2|1.16.3|1.16.3|1.16.3|1.16.3|1.16.4|1.16.4|1.16.4|1.16.4|1.16.5|1.16.5|1.16.5|1.16.5|1.16.6',build='py37h2f8d375_0|py36hde5b4d6_0|py37h2f8d375_1|py36hde5b4d6_1|py37h2f8d375_1|py36h2f8d375_1|py36hde5b4d6_0|py37h2f8d375_0|py37h2f8d375_0|py36hde5b4d6_0|py37h2f8d375_0|py38h2f8d375_0|py38hde5b4d6_0|py36hde5b4d6_0|py37hde5b4d6_0|py36h2f8d375_0|py37hde5b4d6_0|py36h2f8d375_0|py36hde5b4d6_0|py37hde5b4d6_0|py36h2f8d375_0|py37hde5b4d6_0|py36h2f8d375_0|py37h2f8d375_0|py36hde5b4d6_0|py37hde5b4d6_0|py36h2f8d375_0|py37h2f8d375_0|py36hde5b4d6_1|py37hde5b4d6_1|py37hde5b4d6_0|py36hde5b4d6_0|py36h2f8d375_0|py37h2f8d375_0|py37hde5b4d6_1|py36h2f8d375_1|py36h2f8d375_0|py37hde5b4d6_0']
Package six conflicts for:
bob.bio.base -> six
bob.bio.face -> six[version='>=1.15.0,<2.0a0']
numpy=1.16 -> mkl-service[version='>=2,<3.0a0'] -> six
h5py=2.10.0 -> six
Package scipy conflicts for:
bob.bio.face -> bob.bio.base[version='>=4.1.2b.0,<5.0a0'] -> scipy[version='>=0.19|>=1.5.2,<2.0a0']
scikit-learn=0.23.2 -> scipy
bob.bio.base -> scipy
Package certifi conflicts for:
setuptools=50.3.0 -> certifi[version='>=2016.9.26']
bob.io.base -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
bob.io.video -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
bob.extension -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
bob.bio.base -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
bob.bio.face -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
Package mkl_random conflicts for:
bob.io.video -> numpy[version='>=1.16.6,<2.0a0'] -> mkl_random[version='>=1.0.2,<2.0a0']
bob.io.base -> numpy[version='>=1.16.6,<2.0a0'] -> mkl_random[version='>=1.0.2,<2.0a0']
h5py=2.10.0 -> numpy[version='>=1.14.6,<2.0a0'] -> mkl_random[version='>=1.0.2,<2.0a0']
bob.bio.base -> numpy[version='<1.18'] -> mkl_random[version='>=1.0.2,<2.0a0']
numpy=1.16 -> mkl_random[version='>=1.0.2,<2.0a0']
scikit-learn=0.23.2 -> numpy[version='>=1.14.6,<2.0a0'] -> mkl_random[version='>=1.0.2,<2.0a0']
Package libtiff conflicts for:
bob.bio.face -> bob.io.image[version='>=2.5.0b.0,<3.0a0'] -> libtiff[version='>=4.0.9,<5.0a0|>=4.1.0,<5.0a0']
bob.io.video -> pillow -> libtiff[version='>=4.0.10,<5.0a0|>=4.1.0,<5.0a0|>=4.0.9,<5.0a0|>=4.0.8,<5.0a0']
Package scikit-learn conflicts for:
scikit-learn=0.23.2
bob.bio.base -> bob.pipelines -> scikit-learn[version='>=0.22.1,<1.0a0|>=0.23.2,<1.0a0']
Package py-boost conflicts for:
bob.io.video -> boost[version='>=1.73.0,<1.73.1.0a0'] -> py-boost[version='1.65.1|1.67.0|1.67.0|1.73.0',build='py36hff4598c_3|py36h04863e7_4|py37h04863e7_4|py38h962f231_10|py38h962f231_11|py37h962f231_11|py36h962f231_11|py36h962f231_10|py37h962f231_10']
bob.io.base -> boost[version='>=1.73.0,<1.73.1.0a0'] -> py-boost[version='1.65.1|1.67.0|1.67.0|1.73.0',build='py36hff4598c_3|py36h04863e7_4|py37h04863e7_4|py38h962f231_10|py38h962f231_11|py37h962f231_11|py36h962f231_11|py36h962f231_10|py37h962f231_10']
Package bob.bio.base conflicts for:
bob.bio.base
bob.bio.face -> bob.bio.base[version='>=3.3.0,<4.0a0|>=4.0.0,<5.0a0|>=4.0.1,<5.0a0|>=4.0.2,<5.0a0|>=4.1.0,<5.0a0|>=4.1.1,<5.0a0|>=4.1.2b.0,<5.0a0']
Note that strict channel priority may have removed packages required for satisfiability.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/scratch/builds/bob/nightlies/miniconda/bin/bdt", line 11, in <module>
sys.exit(main())
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/bob/devtools/scripts/bdt.py", line 43, in _decorator
value = view_func(*args, **kwargs)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/click/decorators.py", line 21, in new_func
return f(get_current_context(), *args, **kwargs)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/bob/devtools/scripts/ci.py", line 708, in nightlies
test_mark_expr=os.environ.get("TEST_MARK_EXPR", ""),
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/bob/devtools/scripts/bdt.py", line 43, in _decorator
value = view_func(*args, **kwargs)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/bob/devtools/scripts/build.py", line 252, in build
metadata = get_rendered_metadata(d, conda_config)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/bob/devtools/build.py", line 228, in get_rendered_metadata
return conda_build.api.render(recipe_dir, config=config)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/api.py", line 45, in render
permit_unsatisfiable_variants=permit_unsatisfiable_variants)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/render.py", line 834, in render_recipe
allow_no_other_outputs=True, bypass_env_check=bypass_env_check)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/render.py", line 736, in distribute_variants
bypass_env_check=bypass_env_check)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/metadata.py", line 1041, in parse_until_resolved
bypass_env_check=bypass_env_check)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/metadata.py", line 963, in parse_again
bypass_env_check=bypass_env_check),
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/metadata.py", line 1554, in _get_contents
rendered = template.render(environment=env)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/jinja2/environment.py", line 1090, in render
self.environment.handle_exception()
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/jinja2/environment.py", line 832, in handle_exception
reraise(*rewrite_traceback_stack(source=source))
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/jinja2/_compat.py", line 28, in reraise
raise value.with_traceback(tb)
File "/scratch/builds/bob/nightlies/src/bob/bob.bio.video/conda/meta.yaml", line 34, in top-level template code
- {{ pin_compatible('numpy') }}
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/jinja_context.py", line 230, in pin_compatible
pins, _, _ = get_env_dependencies(m, 'host', m.config.variant)
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/render.py", line 149, in get_env_dependencies
channel_urls=tuple(m.config.channel_urls))
File "/scratch/builds/bob/nightlies/miniconda/lib/python3.7/site-packages/conda_build/environ.py", line 804, in get_install_actions
raise DependencyNeedsBuildingError(exc, subdir=subdir)
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {"numpy[version='1.11.*|>=1.17.4,<2.0a0']", "libtiff[version='>=4.0.9,<5.0a0|>=4.1.0,<5.0a0']", "numpy[version='1.12.*|1.13.*|>=1.14.5,<2.0a0|>=1.15.4,<2.0a0|>=1.16.6,<2.0a0|>=1.17.4,<2.0a0|>=1.9.3,<2.0a0']", "bob.extension[version='>=2.5.0,<3.0a0|>=3.1.0,<4.0a0|>=3.1.1,<4.0a0|>=3.2.0,<4.0a0|>=4.0.0,<5.0a0|>=5.0.1,<6.0a0|>=5.0.2b.0,<6.0a0']", "certifi[version='>=2016.9.26']", "python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|3.4.*']", "python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']", "numpy-base[version='1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.2|1.16.2|1.16.2|1.16.2|1.16.3|1.16.3|1.16.3|1.16.3|1.16.4|1.16.4|1.16.4|1.16.4|1.16.5|1.16.5|1.16.5|1.16.5|1.16.6',build='py37h2f8d375_0|py36hde5b4d6_0|py37h2f8d375_1|py36hde5b4d6_1|py37h2f8d375_1|py36h2f8d375_1|py36hde5b4d6_0|py37h2f8d375_0|py37h2f8d375_0|py36hde5b4d6_0|py37h2f8d375_0|py38h2f8d375_0|py38hde5b4d6_0|py36hde5b4d6_0|py37hde5b4d6_0|py36h2f8d375_0|py37hde5b4d6_0|py36h2f8d375_0|py36hde5b4d6_0|py37hde5b4d6_0|py36h2f8d375_0|py37hde5b4d6_0|py36h2f8d375_0|py37h2f8d375_0|py36hde5b4d6_0|py37hde5b4d6_0|py36h2f8d375_0|py37h2f8d375_0|py36hde5b4d6_1|py37hde5b4d6_1|py37hde5b4d6_0|py36hde5b4d6_0|py36h2f8d375_0|py37h2f8d375_0|py37hde5b4d6_1|py36h2f8d375_1|py36h2f8d375_0|py37hde5b4d6_0']", "numpy[version='1.12.*|1.13.*|>=1.14.5,<2.0a0|>=1.15.4,<2.0a0|>=1.16.6,<2.0a0|>=1.9.3,<2.0a0']", "numpy[version='<1.18']", "mkl_random[version='>=1.0.2,<2.0a0']", 'scipy', "numpy[version='>=1.11.3,<2.0a0|>=1.14.6,<2.0a0|>=1.16.6,<2.0a0|>=1.17.4,<2.0a0|>=1.19.2,<2.0a0|>=1.15.1,<2.0a0|>=1.9.3,<2.0a0|>=1.15.4,<2.0a0|>=1.14.5,<2.0a0']", "bob.io.base[version='>=3.0.8,<4.0a0']", "six[version='>=1.15.0,<2.0a0']", "py-boost[version='1.65.1|1.67.0|1.67.0|1.73.0',build='py36hff4598c_3|py36h04863e7_4|py37h04863e7_4|py38h962f231_10|py38h962f231_11|py37h962f231_11|py36h962f231_11|py36h962f231_10|py37h962f231_10']", "python[version='>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']", "bob.extension[version='>=3.1.2,<4.0a0|>=5.0.0,<6.0a0']", 'numpy=1.11', "python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']", 'python', "h5py[version='>=2.10.0,<3.0a0|>=2.8.0,<3.0a0']", "bob.extension[version='>2.0.4|>=2.5.0,<3.0a0|>=3.1.0,<4.0a0|>=3.1.1,<4.0a0|>=3.2.0,<4.0a0|>=4.0.0,<5.0a0|>=5.0.1,<6.0a0|>=5.0.2b.0,<6.0a0']", 'six', "hdf5[version='>=1.10.4,<1.10.5.0a0|>=1.10.6,<1.10.7.0a0']", "bob.bio.base[version='>=3.3.0,<4.0a0|>=4.0.0,<5.0a0|>=4.0.1,<5.0a0|>=4.0.2,<5.0a0|>=4.1.0,<5.0a0|>=4.1.1,<5.0a0|>=4.1.2b.0,<5.0a0']", "libtiff[version='>=4.0.10,<5.0a0|>=4.1.0,<5.0a0|>=4.0.9,<5.0a0|>=4.0.8,<5.0a0']", "numpy[version='>=1.14.6,<2.0a0']", "numpy[version='<1.18|>=1.14.6,<2.0a0|>=1.16.6,<2.0a0|>=1.17.4,<2.0a0|>=1.15.4,<2.0a0|>=1.14.5,<2.0a0|>=1.9.3,<2.0a0']", 'ca-certificates', "python[version='>=3.9,<3.10.0a0']", "scikit-learn[version='>=0.22.1,<1.0a0|>=0.23.2,<1.0a0']", "python[version='>=3.5|>=3.6']", 'setuptools', "bob.io.base[version='>=3.0.10b.0,<4.0a0|>=3.0.9,<4.0a0|>=3.0.7,<4.0a0|>=3.0.6,<4.0a0|>=3.0.5,<4.0a0|>=3.0.4,<4.0a0|>=3.0.3,<4.0a0']", "bob.extension[version='>=2.5.0,<3.0a0|>=3.1.0,<4.0a0|>=3.1.1,<4.0a0|>=3.1.2,<4.0a0|>=3.2.0,<4.0a0|>=4.0.0,<5.0a0|>=5.0.0,<6.0a0|>=5.0.1,<6.0a0|>=5.0.2b.0,<6.0a0']", "hdf5[version='>=1.10.1,<1.10.2.0a0|>=1.10.2,<1.10.3.0a0|>=1.10.6,<1.10.7.0a0']", "python[version='>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0']", "numpy[version='>=1.11.3,<2.0a0|>=1.15.1,<2.0a0|>=1.9.3,<2.0a0']", '_libgcc_mutex=[build=main]', "numpy-base[version='>=1.0.2,<2.0a0|>=1.0.6,<2.0a0']", "python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0']", "numpy[version='>=1.11.3,<2.0a0|>=1.14.6,<2.0a0']", "scipy[version='>=0.19|>=1.5.2,<2.0a0']", "hdf5[version='1.8.17|1.8.17.*|>=1.10.1,<1.10.2.0a0|>=1.10.2,<1.10.3.0a0|>=1.10.6,<1.10.7.0a0']", "certifi[version='>=2016.09|>=2016.9.26']"}
```Bob 9.0.0Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.db.base/-/issues/27check_parameters_for_validity does not handle empty lists as advertised2020-11-25T16:17:38ZYannick DAYERcheck_parameters_for_validity does not handle empty lists as advertisedPassing an empty list as parameter should be handled as `None` is: return `default_parameters`.
[bob.db.base.utils l.341](https://gitlab.idiap.ch/bob/bob.db.base/-/blob/2f2b60b6eb08564dcf6abcc6194b1210b15be579/bob/db/base/utils.py#L341)Passing an empty list as parameter should be handled as `None` is: return `default_parameters`.
[bob.db.base.utils l.341](https://gitlab.idiap.ch/bob/bob.db.base/-/blob/2f2b60b6eb08564dcf6abcc6194b1210b15be579/bob/db/base/utils.py#L341)Bob 9.0.0Yannick DAYERYannick DAYERhttps://gitlab.idiap.ch/bob/bob.bio.base/-/issues/149Follow-up from "Add a method to retrieve all the samples of a dataset"2020-11-26T13:36:47ZAmir MOHAMMADIFollow-up from "Add a method to retrieve all the samples of a dataset"The following discussion from !217 should be addressed:
- [ ] @amohammadi started a [discussion](https://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/217#note_58672): (+2 comments)
> @ydayer what if groups is `["dev"]` or `["...The following discussion from !217 should be addressed:
- [ ] @amohammadi started a [discussion](https://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/217#note_58672): (+2 comments)
> @ydayer what if groups is `["dev"]` or `["train", "dev"]` both options will return the same samples, no?Bob 9.0.0Yannick DAYERYannick DAYERhttps://gitlab.idiap.ch/bob/bob.pipelines/-/issues/27The `DelayedSampleCall` makes pipelines memory greedy.2020-11-26T18:06:00ZTiago de Freitas PereiraThe `DelayedSampleCall` makes pipelines memory greedy.The way we delay transformer calls (look https://gitlab.idiap.ch/bob/bob.pipelines/-/blob/master/bob/pipelines/wrappers.py#L132) makes our pipeline super memory greedy.
I'm running a simple experiment **LOCALLY**, no dask involved, on `...The way we delay transformer calls (look https://gitlab.idiap.ch/bob/bob.pipelines/-/blob/master/bob/pipelines/wrappers.py#L132) makes our pipeline super memory greedy.
I'm running a simple experiment **LOCALLY**, no dask involved, on `bob.bio.base` wrapping everything with the `CheckpointWrapper`; and my experiment blows 32GB of my RAM + my swap without writing one single file from mine experiment.
Do you have any thoughts on this @amohammadi ?
Do you think is a good call the `DelayedSampleCall`?
Thanks
ping @ydayerBob 9.0.0https://gitlab.idiap.ch/bob/bob.bio.base/-/issues/148Follow-up from "[VanillaBiometrics] Make some dask arguments visible in the C...2020-11-23T14:51:12ZTiago de Freitas PereiraFollow-up from "[VanillaBiometrics] Make some dask arguments visible in the CLI commands"The following discussion from !213 should be addressed:
- [ ] @amohammadi started a [discussion](https://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/213#note_58461):
> @tiago.pereira please put `cls=ResourceOption` in these ...The following discussion from !213 should be addressed:
- [ ] @amohammadi started a [discussion](https://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/213#note_58461):
> @tiago.pereira please put `cls=ResourceOption` in these options and `type` should be `click.Int`Bob 9.0.0https://gitlab.idiap.ch/bob/bob.pipelines/-/issues/26DelayedSamples with arbitrary delayed attributes2020-11-23T10:27:22ZAmir MOHAMMADIDelayedSamples with arbitrary delayed attributesI think it is often required that we load some attributes of sample in a lazy manner.
We do this using our DelayedSample class but the problem with that is that it can only delay loading of `data`.
We need a generic implementation that d...I think it is often required that we load some attributes of sample in a lazy manner.
We do this using our DelayedSample class but the problem with that is that it can only delay loading of `data`.
We need a generic implementation that delays the loading of everything like `sample.annotations`.Bob 9.0.0Amir MOHAMMADIAmir MOHAMMADI