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Created by: sc-jumper

The variant of SGE that we use requires the attributes "hvmem" (which is included in the current version) and "estmem" which is not included. I couldn't find a more graceful way to fix this so I added the attribute to the "def qsub" in tools.py.

def qsub(command, queue=None, cwd=True, name=None, deps=[], stdout='', stderr='', env=[], array=None, context='grid', hostname=None, memfree=None, hvmem=None, estmem=None, pe_opt=None, io_big=False):

Along with the following code in the method body. if estmem: scmd += ['-l', 'estmem=%s' % estmem] ...immediately following hvmem update...