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bob
conda
Commits
799f94ac
Commit
799f94ac
authored
Aug 27, 2019
by
André Anjos
💬
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[snakemake] Add recipe
parent
e6964e53
Pipeline
#32807
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in 36 minutes
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conda/snakemake/meta.yaml
conda/snakemake/meta.yaml
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python.txt
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conda/snakemake/meta.yaml
0 → 100644
View file @
799f94ac
{
%
set version = "5.5.4" %
}
package
:
name
:
snakemake
version
:
{{
version
}}
source
:
url
:
https://pypi.io/packages/source/s/snakemake/snakemake-{{ version }}.tar.gz
sha256
:
44ef8e4d9850b2480f29ddbcc6d57540be9440d1422366bb3bb68e285377a959
build
:
noarch
:
python
script
:
python -m pip install --no-deps --ignore-installed .
entry_points
:
-
snakemake = snakemake:main
-
snakemake-bash-completion = snakemake:bash_completion
requirements
:
host
:
-
python >=3.5
-
pip
-
setuptools
run
:
-
python >=3.5
-
setuptools
-
wrapt
-
requests
-
docutils
-
pyyaml
-
datrie
-
requests >=2.8.1
-
psutil
-
ratelimiter
-
configargparse
-
appdirs
-
jsonschema
-
gitpython
-
jinja2
-
pygraphviz
-
networkx >=2.0
-
dropbox >=7.2.1
-
pygments
# nice optionals not included with the default package
#- ftputil >=3.2
#- filechunkio >=1.6
#- pysftp >=0.2.8
#- aioeasywebdav
#- pandas #not required "required"
#- python-irodsclient
#- google-cloud-storage
#- boto3
test
:
imports
:
-
snakemake
commands
:
-
export GIT\_PYTHON_REFRESH=warn
-
snakemake --version
-
snakemake --version | grep "{{ version }}"
about
:
home
:
https://snakemake.readthedocs.io
license
:
MIT
summary
:
A popular workflow management system aiming at full in-silico reproducibility.
description
:
|
Snakemake is a workflow management system that aims to reduce the
complexity of creating workflows by providing a fast and comfortable
execution environment, together with a clean and modern specification
language in python style. Snakemake workflows are essentially Python
scripts extended by declarative code to define rules. Rules describe how to
create output files from input files. This installation is copied from
bioconda and contains a more or less "packed" setup, with most used
functionality.
extra
:
skip-lints
:
-
uses_setuptools
# uses pkg_resoures during run time
recipe-maintainers
:
-
anjos
python.txt
View file @
799f94ac
...
...
@@ -22,5 +22,6 @@ conda/nodeenv
conda/pre-commit
conda/pytest-qt
conda/ddt
conda/snakemake
conda/bob-devel
conda/beat-devel
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