Commit 799f94ac authored by André Anjos's avatar André Anjos 💬

[snakemake] Add recipe

parent e6964e53
Pipeline #32807 failed with stage
in 36 minutes
{% set version = "5.5.4" %}
package:
name: snakemake
version: {{ version }}
source:
url: https://pypi.io/packages/source/s/snakemake/snakemake-{{ version }}.tar.gz
sha256: 44ef8e4d9850b2480f29ddbcc6d57540be9440d1422366bb3bb68e285377a959
build:
noarch: python
script: python -m pip install --no-deps --ignore-installed .
entry_points:
- snakemake = snakemake:main
- snakemake-bash-completion = snakemake:bash_completion
requirements:
host:
- python >=3.5
- pip
- setuptools
run:
- python >=3.5
- setuptools
- wrapt
- requests
- docutils
- pyyaml
- datrie
- requests >=2.8.1
- psutil
- ratelimiter
- configargparse
- appdirs
- jsonschema
- gitpython
- jinja2
- pygraphviz
- networkx >=2.0
- dropbox >=7.2.1
- pygments
# nice optionals not included with the default package
#- ftputil >=3.2
#- filechunkio >=1.6
#- pysftp >=0.2.8
#- aioeasywebdav
#- pandas #not required "required"
#- python-irodsclient
#- google-cloud-storage
#- boto3
test:
imports:
- snakemake
commands:
- export GIT\_PYTHON_REFRESH=warn
- snakemake --version
- snakemake --version | grep "{{ version }}"
about:
home: https://snakemake.readthedocs.io
license: MIT
summary: A popular workflow management system aiming at full in-silico reproducibility.
description: |
Snakemake is a workflow management system that aims to reduce the
complexity of creating workflows by providing a fast and comfortable
execution environment, together with a clean and modern specification
language in python style. Snakemake workflows are essentially Python
scripts extended by declarative code to define rules. Rules describe how to
create output files from input files. This installation is copied from
bioconda and contains a more or less "packed" setup, with most used
functionality.
extra:
skip-lints:
- uses_setuptools # uses pkg_resoures during run time
recipe-maintainers:
- anjos
......@@ -22,5 +22,6 @@ conda/nodeenv
conda/pre-commit
conda/pytest-qt
conda/ddt
conda/snakemake
conda/bob-devel
conda/beat-devel
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