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bob
conda
Commits
7874f22c
Commit
7874f22c
authored
Aug 08, 2019
by
André Anjos
💬
Browse files
Merge branch 'base-software-updates' into 'master'
Base software updates Closes
#57
See merge request bob/bob.conda!423
parents
5241cb20
6b9c7e3a
Pipeline
#32383
passed with stage
in 72 minutes and 7 seconds
Changes
12
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
conda/beat-devel/meta.yaml
View file @
7874f22c
...
...
@@ -2,7 +2,7 @@
{
%
set nopin =
[
'
ca-certificates'
,
'
certifi'
,
'
openssl'
,
'
libstdcxx-ng'
,
'
libgcc-ng'
,
'
libcxx'
,
'
libcxxabi'
]
%
}
package
:
name
:
beat-devel
version
:
2019.08.0
8
version
:
2019.08.0
9
build
:
# the build number must be zero all the time.
...
...
@@ -15,7 +15,7 @@ build:
requirements
:
host
:
-
python {{ python }}
-
bob-devel 2019.08.0
8
-
bob-devel 2019.08.0
9
-
docker-py 4.0.2
-
flask 1.0.2
-
flask-cors 3.0.7
...
...
@@ -26,7 +26,7 @@ requirements:
-
python-graphviz 0.8.4
-
pyzmq 17.1.2
-
simplejson 3.16.0
-
sphinxcontrib-programoutput
0.1
1
-
sphinxcontrib-programoutput
0.1
4
-
sphinxcontrib-httpdomain 1.7.0
-
psycopg2 2.7.6.1
run
:
...
...
conda/bob-devel/meta.yaml
View file @
7874f22c
...
...
@@ -2,9 +2,9 @@
{
%
set nopin =
[
'
ca-certificates'
,
'
certifi'
,
'
openssl'
,
'
libstdcxx-ng'
,
'
libgcc-ng'
,
'
libcxx'
,
'
libcxxabi'
]
%
}
package
:
name
:
bob-devel
# please update the version of beat-devel and update bob-devel's version
there
# as well in the same merge request.
version
:
2019.08.0
8
# please update the version of beat-devel and update bob-devel's version
#
there
as well in the same merge request.
version
:
2019.08.0
9
build
:
# the build number must be zero all the time.
...
...
@@ -17,9 +17,9 @@ build:
requirements
:
host
:
-
python {{ python }}
# IMPORTANT: To update this list, create a conda environment with all the
below
# packages without any pinning. Once the environment is resolved,
observe those
# versions and put them here.
# IMPORTANT: To update this list, create a conda environment with all the
#
below
packages without any pinning. Once the environment is resolved,
#
observe those
versions and put them here.
# Dependency list of bob packages. Everything is pinned to allow for better
# reproducibility.
...
...
@@ -29,7 +29,7 @@ requirements:
-
click-plugins 1.1.1
-
cmake 3.14.0
-
coverage 4.5.3
-
cyvlfeat 0.
4.6
-
cyvlfeat 0.
5.1
-
docopt 0.6.2
# to make sure we get ffmpeg from our own channel which has more codecs
-
ffmpeg 4.0 hadceb68_1
# [linux]
...
...
@@ -47,22 +47,22 @@ requirements:
-
libsvm
3.22
-
libtiff 4.0.10
-
matplotlib 3.1.0
-
menpo 0.
8
.1
-
menpofit 0.
5.0
-
menpo 0.
9
.1
-
menpofit 0.
6.1
-
mkl
2019.4
-
mne 0.1
5.2
-
mr.developer
1.38
-
mne 0.1
8.1
-
mr.developer
2.0.0
-
nose 1.3.7
-
numpy 1.16.4
-
opencv 3.4.2
-
pillow 6.1.0
-
pkg-config 0.29.2
-
pyedflib 0.1.1
1
-
pyedflib 0.1.1
4
-
cudatoolkit
9.0
# [linux]
-
pytorch 1.1.0
# [linux]
-
pyyaml 5.1.1
-
requests 2.22.0
-
schema 0.
6.8
-
schema 0.
7.0
-
scikit-image 0.15.0
-
scikit-learn 0.21.2
-
scipy 1.2.1
...
...
@@ -76,9 +76,10 @@ requirements:
-
tensorflow 1.14.0
-
torchvision 0.3.0
# [linux]
-
vlfeat 0.9.21
-
zc.buildout 2.1
2
.2
-
zc.buildout 2.1
3
.2
-
zc.recipe.egg 2.0.7
# beat-devel direct dependencies that leak to bob-devel as indirect dependencies:
# beat-devel direct dependencies that leak to bob-devel as indirect
# dependencies:
-
termcolor 1.1.0
# semi-supported dependencies (drop them if they conflict):
-
dlib
19.7
...
...
conda/cyvlfeat/meta.yaml
View file @
7874f22c
{
%
set name = "cyvlfeat" %
}
{
%
set version = "0.
4.6
" %
}
{
%
set sha256 = "
5bc5de3c2e40240b8cb6ff06d744fe92911635d7b61c3a034ba93f6297df4732
" %
}
{
%
set version = "0.
5.1
" %
}
{
%
set sha256 = "
816d0609c5f5a1b4e4a620a9cb204abe26c8cd6a166d077923242f6cf15c2c09
" %
}
package
:
name
:
{{
name
}}
...
...
@@ -12,7 +12,7 @@ source:
sha256
:
{{
sha256
}}
build
:
number
:
4
number
:
0
requirements
:
build
:
...
...
@@ -25,7 +25,6 @@ requirements:
-
cython {{ cython }}
-
numpy {{ numpy }}
-
vlfeat {{ vlfeat }}
# - msinttypes r26 # [win]
run
:
-
python
...
...
conda/ipdb/meta.yaml
View file @
7874f22c
{
%
set version = "0.1
1
" %
}
{
%
set version = "0.1
2.2
" %
}
package
:
name
:
ipdb
...
...
@@ -6,7 +6,7 @@ package:
source
:
url
:
https://pypi.io/packages/source/i/ipdb/ipdb-{{ version }}.tar.gz
sha256
:
7081c65ed7bfe7737f83fa4213ca8afd9617b42ff6b3f1daf9a3419839a2a00a
sha256
:
473fdd798a099765f093231a8b1fabfa95b0b682fce12de0c74b61a4b4d8ee57
build
:
number
:
0
...
...
@@ -16,12 +16,12 @@ build:
requirements
:
build
:
-
python
-
ipython >=5.
0
.0
-
ipython >=5.
1
.0
-
setuptools
run
:
-
python
-
ipython >=5.
0
.0
-
ipython >=5.
1
.0
test
:
requires
:
...
...
conda/menpo/meta.yaml
View file @
7874f22c
{
%
set name = "menpo" %
}
{
%
set version = "0.
8
.1" %
}
{
%
set sha256 = "
3b74f1e598bb8ee561f3f48714be007ba7d4dc4a326a35125e436fa570e7e73f
" %
}
{
%
set version = "0.
9
.1" %
}
{
%
set sha256 = "
691f74ec6544bc56753b17a9f72d368f2928eaab5c2bf19673482552631683e9
" %
}
package
:
name
:
{{
name
}}
...
...
@@ -10,14 +10,9 @@ source:
fn
:
{{
name
}}
-v{{ version }}.tar.gz
url
:
https://github.com/menpo/menpo/archive/v{{ version }}.tar.gz
sha256
:
{{
sha256
}}
patches
:
# removes the pinning for scipy<1
# removes the pinning for matplotlib<2
# relaxes the pathlib pinning for python 2.x
-
relax-pins.patch
build
:
number
:
8
number
:
0
script
:
python setup.py install --single-version-externally-managed --record=record.txt
run_exports
:
-
{{
pin_subpackage(name
,
max_pin='x.x')
}}
...
...
@@ -30,7 +25,6 @@ requirements:
host
:
-
python
-
setuptools
-
pathlib
1.0
-
numpy {{ numpy }}
-
cython {{ cython }}
-
ffmpeg {{ ffmpeg }}
...
...
@@ -41,19 +35,20 @@ requirements:
-
{{
pin_compatible('numpy')
}}
# Scientific Python Stack
-
scipy
<
1.
3
-
pillow >=
3
.0
-
scipy
>=
1.
0
-
pillow >=
4
.0
# Features
-
cyvlfeat >=0.
4.3
,<0.
5
-
cyvlfeat >=0.
5
,<0.
6
# Visualization
-
matplotlib
-
matplotlib
>=3.0
test
:
requires
:
-
mock
-
nose
-
pytest
-
coverage
files
:
...
...
@@ -63,7 +58,7 @@ test:
-
{{
name
}}
commands
:
-
nosetests
{{ name }} -v --with-coverage --cover-package={{ name }} --exclude=".*test_rasterize_matplotlib_basic_line.*" --exclude=".*homogeneous_test.*" --exclude=".*test_importing_v1_ljson_null_values.*"
-
nosetests
-v --exclude=".*test_labels.*" {{ name }}
-
conda inspect linkages -p $PREFIX {{ name }}
# [not win]
-
conda inspect objects -p $PREFIX {{ name }}
# [osx]
...
...
@@ -75,4 +70,3 @@ about:
extra
:
recipe-maintainers
:
-
anjos
conda/menpofit/meta.yaml
View file @
7874f22c
{
%
set version = "0.
5.0
" %
}
{
%
set version = "0.
6.1
" %
}
package
:
name
:
menpofit
...
...
@@ -19,19 +19,20 @@ requirements:
run
:
-
python
-
menpo >=0.
8
,<0.
9
-
menpo >=0.
9
,<0.
10
-
scikit-learn >=0.16
test
:
requires
:
-
nose
-
pytest
-
mock
imports
:
-
menpofit
commands
:
-
nosetests menpofit
-
nosetests
-v
menpofit
about
:
home
:
https://github.com/menpo/menpofit/
...
...
conda/mne/meta.yaml
View file @
7874f22c
{
%
set version = "0.1
5.2
" %
}
{
%
set version = "0.1
8.1
" %
}
package
:
name
:
mne
...
...
@@ -19,102 +19,19 @@ requirements:
run
:
-
python
-
numpy >=1.
8
-
scipy >=0.1
2
-
matplotlib >=1.
3
-
numpy >=1.
11.3
-
scipy >=0.1
7.1
-
matplotlib >=1.
5
-
scikit-learn >=0.18
-
pandas >=0.1
2
-
pandas >=0.1
8
test
:
requires
:
-
nose
source_files
:
-
mne/io/brainvision/tests/data/*
-
mne/io/bti/tests/data/*
-
mne/io/edf/tests/data/*
-
mne/io/egi/tests/data/*
-
mne/io/kit/tests/data/*
-
mne/io/nicolet/tests/data/*
-
mne/io/tests/data/*
-
mne/preprocessing/tests/data/*
imports
:
-
mne
-
mne.beamformer
-
mne.beamformer.tests
-
mne.channels
-
mne.channels.tests
-
mne.commands
-
mne.commands.tests
-
mne.connectivity
-
mne.connectivity.tests
-
mne.data
-
mne.datasets
-
mne.datasets._fake
-
mne.datasets.brainstorm
-
mne.datasets.eegbci
-
mne.datasets.megsim
-
mne.datasets.misc
-
mne.datasets.multimodal
-
mne.datasets.sample
-
mne.datasets.somato
-
mne.datasets.spm_face
-
mne.datasets.testing
-
mne.datasets.tests
-
mne.decoding
-
mne.decoding.tests
-
mne.externals
-
mne.externals.h5io
-
mne.externals.tempita
-
mne.forward
-
mne.forward.tests
-
mne.gui
-
mne.gui.tests
-
mne.inverse_sparse
-
mne.inverse_sparse.tests
-
mne.io
-
mne.io.array
-
mne.io.array.tests
-
mne.io.brainvision
-
mne.io.brainvision.tests
-
mne.io.bti
-
mne.io.bti.tests
-
mne.io.cnt
-
mne.io.cnt.tests
-
mne.io.ctf
-
mne.io.ctf.tests
-
mne.io.edf
-
mne.io.edf.tests
-
mne.io.eeglab
-
mne.io.egi
-
mne.io.egi.tests
-
mne.io.fiff
-
mne.io.fiff.tests
-
mne.io.kit
-
mne.io.kit.tests
-
mne.io.nicolet
-
mne.io.nicolet.tests
-
mne.io.tests
-
mne.minimum_norm
-
mne.minimum_norm.tests
-
mne.preprocessing
-
mne.preprocessing.tests
-
mne.realtime
-
mne.realtime.tests
-
mne.simulation
-
mne.simulation.tests
-
mne.stats
-
mne.stats.tests
-
mne.tests
-
mne.time_frequency
-
mne.time_frequency.tests
-
mne.viz
-
mne.viz.tests
commands
:
-
nosetests -sv
mne
-
mne
about
:
home
:
https://github.com/mne-tools/mne-python/
...
...
conda/mr.developer/meta.yaml
View file @
7874f22c
{
%
set version = "
1.38
" %
}
{
%
set version = "
2.0.0
" %
}
package
:
name
:
mr.developer
...
...
@@ -7,7 +7,7 @@ package:
source
:
fn
:
mr.developer-{{ version }}.tar.gz
url
:
https://pypi.io/packages/source/m/mr.developer/mr.developer-{{ version }}.tar.gz
md5
:
bffc800578cb5c75cfd8b17b4403368f
sha256
:
76e5db1b7d8a4a324049d7529c02312dc2b6b267b5113ab326d112bdd71cf445
build
:
number
:
0
...
...
@@ -22,6 +22,7 @@ requirements:
run
:
-
python
-
setuptools
-
six
-
zc.buildout >=1.2.0
test
:
...
...
conda/pyedflib/meta.yaml
View file @
7874f22c
{
%
set name = "pyedflib" %
}
{
%
set version = "0.1.1
1
" %
}
{
%
set version = "0.1.1
4
" %
}
package
:
name
:
{{
name
}}
...
...
@@ -7,10 +7,10 @@ package:
source
:
url
:
https://pypi.io/packages/source/p/pyEDFlib/pyEDFlib-{{ version }}.tar.gz
md5
:
28c88693ec65ae0bd950f0a8002f4104
sha256
:
cd4a0747df1557d9d724f4cf91c8ea76a9a26c6d2280bb2696bb05334fc61bc6
build
:
number
:
1
number
:
0
script
:
python setup.py install --single-version-externally-managed --record=record.txt
requirements
:
...
...
conda/schema/meta.yaml
View file @
7874f22c
{
%
set version = "0.
6.8
" %
}
{
%
set version = "0.
7.0
" %
}
package
:
name
:
schema
...
...
@@ -6,7 +6,7 @@ package:
source
:
url
:
https://pypi.io/packages/source/s/schema/schema-{{ version }}.tar.gz
sha256
:
fa1a53fe5f3b6929725a4e81688c250f46838e25d8c1885a10a590c8c01a7b74
sha256
:
44add3ef9016c85ac4b0291b45286a657d0df309b31528ca8d0a9c6d0aa68186
build
:
number
:
0
...
...
@@ -23,6 +23,7 @@ requirements:
test
:
requires
:
-
mock
-
pytest
source_files
:
...
...
conda/sphinxcontrib-programoutput/meta.yaml
View file @
7874f22c
{
%
set name = "sphinxcontrib-programoutput" %
}
{
%
set version = "0.1
1
" %
}
{
%
set sha256 = "
cbec3ee1c3abd09e105115ab69cb5ade8ca1be9811565a844f973e93e0314
83
7
" %
}
{
%
set version = "0.1
4
" %
}
{
%
set sha256 = "
75b182e9e8cf7efe828cac2c351bb737b00a76bc3aa60fd1a9b2b7096e99c3
83" %
}
package
:
name
:
{{
name|lower
}}
...
...
conda/zc.buildout/meta.yaml
View file @
7874f22c
{
%
set version = "2.1
2
.2" %
}
{
%
set version = "2.1
3
.2" %
}
package
:
name
:
zc.buildout
...
...
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