From 182a137d4b172477bd8e3174fc35148abddd1303 Mon Sep 17 00:00:00 2001
From: ageorge <anjith.george@idiap.ch>
Date: Fri, 15 Feb 2019 12:32:59 +0100
Subject: [PATCH] Mosa
---
.gitignore | 13 +
.gitlab-ci.yml | 129 ++++
COPYING | 674 ++++++++++++++++++
MANIFEST.in | 3 +
README.md | 4 -
README.rst | 53 ++
bob/__init__.py | 3 +
bob/paper/__init__.py | 3 +
bob/paper/mccnn/__init__.py | 3 +
bob/paper/mccnn/tifs2018/__init__.py | 12 +
bob/paper/mccnn/tifs2018/config/__init__.py | 0
.../tifs2018/config/preprocessor/__init__.py | 0
.../config/preprocessor/mc_preprocessor.py | 87 +++
bob/paper/mccnn/tifs2018/script/__init__.py | 0
bob/paper/mccnn/tifs2018/script/version.py | 13 +
bob/paper/mccnn/tifs2018/test.py | 9 +
buildout.cfg | 14 +
conda/meta.yaml | 61 ++
doc/conf.py | 269 +++++++
doc/img/favicon.ico | Bin 0 -> 4286 bytes
doc/img/logo.png | Bin 0 -> 6266 bytes
doc/index.rst | 32 +
doc/links.rst | 18 +
doc/references.rst | 8 +
requirements.txt | 7 +
setup.py | 116 +++
version.txt | 1 +
27 files changed, 1528 insertions(+), 4 deletions(-)
create mode 100644 .gitignore
create mode 100644 .gitlab-ci.yml
create mode 100644 COPYING
create mode 100644 MANIFEST.in
delete mode 100644 README.md
create mode 100644 README.rst
create mode 100644 bob/__init__.py
create mode 100644 bob/paper/__init__.py
create mode 100644 bob/paper/mccnn/__init__.py
create mode 100644 bob/paper/mccnn/tifs2018/__init__.py
create mode 100644 bob/paper/mccnn/tifs2018/config/__init__.py
create mode 100644 bob/paper/mccnn/tifs2018/config/preprocessor/__init__.py
create mode 100644 bob/paper/mccnn/tifs2018/config/preprocessor/mc_preprocessor.py
create mode 100644 bob/paper/mccnn/tifs2018/script/__init__.py
create mode 100644 bob/paper/mccnn/tifs2018/script/version.py
create mode 100644 bob/paper/mccnn/tifs2018/test.py
create mode 100644 buildout.cfg
create mode 100644 conda/meta.yaml
create mode 100644 doc/conf.py
create mode 100644 doc/img/favicon.ico
create mode 100644 doc/img/logo.png
create mode 100644 doc/index.rst
create mode 100644 doc/links.rst
create mode 100644 doc/references.rst
create mode 100644 requirements.txt
create mode 100644 setup.py
create mode 100644 version.txt
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..b8afedd
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,13 @@
+*~
+*.swp
+*.pyc
+bin
+eggs
+parts
+.installed.cfg
+.mr.developer.cfg
+*.egg-info
+src
+develop-eggs
+sphinx
+dist
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
new file mode 100644
index 0000000..e4c0e14
--- /dev/null
+++ b/.gitlab-ci.yml
@@ -0,0 +1,129 @@
+# This build file uses template features from YAML so it is generic enough for
+# any Bob project. Don't modify it unless you know what you're doing.
+
+# Definition of global variables (all stages)
+variables:
+ CONDA_ROOT: "${CI_PROJECT_DIR}/miniconda"
+
+
+# Definition of our build pipeline order
+stages:
+ - build
+ - deploy
+ - pypi
+
+
+# Build targets
+.build_template: &build_job
+ stage: build
+ before_script:
+ - mkdir _ci
+ - curl --silent "https://gitlab.idiap.ch/bob/bob.admin/raw/master/gitlab/install.sh" > _ci/install.sh
+ - chmod 755 _ci/install.sh
+ - ./_ci/install.sh _ci master #installs ci support scripts
+ - ./_ci/before_build.sh
+ script:
+ - ./_ci/build.sh
+ after_script:
+ - ./_ci/after_build.sh
+ cache: &build_caches
+ paths:
+ - miniconda.sh
+ - ${CONDA_ROOT}/pkgs/*.tar.bz2
+ - ${CONDA_ROOT}/pkgs/urls.txt
+
+
+.build_linux_template: &linux_build_job
+ <<: *build_job
+ tags:
+ - docker
+ image: continuumio/conda-concourse-ci
+ artifacts:
+ expire_in: 1 week
+ paths:
+ - _ci/
+ - ${CONDA_ROOT}/conda-bld/linux-64/*.tar.bz2
+ cache:
+ <<: *build_caches
+ key: "linux-cache"
+
+
+.build_macosx_template: &macosx_build_job
+ <<: *build_job
+ tags:
+ - macosx
+ artifacts:
+ expire_in: 1 week
+ paths:
+ - _ci/
+ - ${CONDA_ROOT}/conda-bld/osx-64/*.tar.bz2
+ cache:
+ <<: *build_caches
+ key: "macosx-cache"
+
+
+build_linux_36:
+ <<: *linux_build_job
+ variables:
+ PYTHON_VERSION: "3.6"
+ BUILD_EGG: "true"
+ artifacts:
+ expire_in: 1 week
+ paths:
+ - _ci/
+ - dist/*.zip
+ - sphinx
+ - ${CONDA_ROOT}/conda-bld/linux-64/*.tar.bz2
+
+
+build_macosx_36:
+ <<: *macosx_build_job
+ variables:
+ PYTHON_VERSION: "3.6"
+
+
+# Deploy targets
+.deploy_template: &deploy_job
+ stage: deploy
+ before_script:
+ - ./_ci/install.sh _ci master #updates ci support scripts
+ script:
+ - ./_ci/deploy.sh
+ dependencies:
+ - build_linux_36
+ - build_macosx_36
+ tags:
+ - deployer
+
+
+deploy_beta:
+ <<: *deploy_job
+ environment: beta
+ only:
+ - master
+
+
+deploy_stable:
+ <<: *deploy_job
+ environment: stable
+ only:
+ - /^v\d+\.\d+\.\d+([abc]\d*)?$/ # PEP-440 compliant version (tags)
+ except:
+ - branches
+
+
+pypi:
+ stage: pypi
+ environment: pypi
+ only:
+ - /^v\d+\.\d+\.\d+([abc]\d*)?$/ # PEP-440 compliant version (tags)
+ except:
+ - branches
+ before_script:
+ - ./_ci/install.sh _ci master #updates ci support scripts
+ script:
+ - ./_ci/pypi.sh
+ dependencies:
+ - build_linux_36
+ tags:
+ - deployer
diff --git a/COPYING b/COPYING
new file mode 100644
index 0000000..94a9ed0
--- /dev/null
+++ b/COPYING
@@ -0,0 +1,674 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
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+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+ Preamble
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+Corresponding Source of the work from the predecessor in interest, if
+the predecessor has it or can get it with reasonable efforts.
+
+ You may not impose any further restrictions on the exercise of the
+rights granted or affirmed under this License. For example, you may
+not impose a license fee, royalty, or other charge for exercise of
+rights granted under this License, and you may not initiate litigation
+(including a cross-claim or counterclaim in a lawsuit) alleging that
+any patent claim is infringed by making, using, selling, offering for
+sale, or importing the Program or any portion of it.
+
+ 11. Patents.
+
+ A "contributor" is a copyright holder who authorizes use under this
+License of the Program or a work on which the Program is based. The
+work thus licensed is called the contributor's "contributor version".
+
+ A contributor's "essential patent claims" are all patent claims
+owned or controlled by the contributor, whether already acquired or
+hereafter acquired, that would be infringed by some manner, permitted
+by this License, of making, using, or selling its contributor version,
+but do not include claims that would be infringed only as a
+consequence of further modification of the contributor version. For
+purposes of this definition, "control" includes the right to grant
+patent sublicenses in a manner consistent with the requirements of
+this License.
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+ Each contributor grants you a non-exclusive, worldwide, royalty-free
+patent license under the contributor's essential patent claims, to
+make, use, sell, offer for sale, import and otherwise run, modify and
+propagate the contents of its contributor version.
+
+ In the following three paragraphs, a "patent license" is any express
+agreement or commitment, however denominated, not to enforce a patent
+(such as an express permission to practice a patent or covenant not to
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+party means to make such an agreement or commitment not to enforce a
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+ If you convey a covered work, knowingly relying on a patent license,
+and the Corresponding Source of the work is not available for anyone
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+publicly available network server or other readily accessible means,
+then you must either (1) cause the Corresponding Source to be so
+available, or (2) arrange to deprive yourself of the benefit of the
+patent license for this particular work, or (3) arrange, in a manner
+consistent with the requirements of this License, to extend the patent
+license to downstream recipients. "Knowingly relying" means you have
+actual knowledge that, but for the patent license, your conveying the
+covered work in a country, or your recipient's use of the covered work
+in a country, would infringe one or more identifiable patents in that
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+
+ If, pursuant to or in connection with a single transaction or
+arrangement, you convey, or propagate by procuring conveyance of, a
+covered work, and grant a patent license to some of the parties
+receiving the covered work authorizing them to use, propagate, modify
+or convey a specific copy of the covered work, then the patent license
+you grant is automatically extended to all recipients of the covered
+work and works based on it.
+
+ A patent license is "discriminatory" if it does not include within
+the scope of its coverage, prohibits the exercise of, or is
+conditioned on the non-exercise of one or more of the rights that are
+specifically granted under this License. You may not convey a covered
+work if you are a party to an arrangement with a third party that is
+in the business of distributing software, under which you make payment
+to the third party based on the extent of your activity of conveying
+the work, and under which the third party grants, to any of the
+parties who would receive the covered work from you, a discriminatory
+patent license (a) in connection with copies of the covered work
+conveyed by you (or copies made from those copies), or (b) primarily
+for and in connection with specific products or compilations that
+contain the covered work, unless you entered into that arrangement,
+or that patent license was granted, prior to 28 March 2007.
+
+ Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+ 12. No Surrender of Others' Freedom.
+
+ If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License. If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you may
+not convey it at all. For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+ 13. Use with the GNU Affero General Public License.
+
+ Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work. The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+ 14. Revised Versions of this License.
+
+ The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time. Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+ Each version is given a distinguishing version number. If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation. If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+ If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+ Later license versions may give you additional or different
+permissions. However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+ 15. Disclaimer of Warranty.
+
+ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+ 16. Limitation of Liability.
+
+ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+ 17. Interpretation of Sections 15 and 16.
+
+ If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+ <one line to give the program's name and a brief idea of what it does.>
+ Copyright (C) <year> <name of author>
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+ <program> Copyright (C) <year> <name of author>
+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
diff --git a/MANIFEST.in b/MANIFEST.in
new file mode 100644
index 0000000..11190ee
--- /dev/null
+++ b/MANIFEST.in
@@ -0,0 +1,3 @@
+include README.rst bootstrap-buildout.py buildout.cfg COPYING version.txt requirements.txt
+recursive-include doc *.py *.rst *.ico *.png
+recursive-include bob/paper/mccnn/tifs2018/config *.pth
diff --git a/README.md b/README.md
deleted file mode 100644
index 6c70684..0000000
--- a/README.md
+++ /dev/null
@@ -1,4 +0,0 @@
-Source code and score files for reproducing the experiments and figures of the paper "Biometric Face Presentation Attack Detection with Multi-Channel Convolutional Neural Network"
-
-
-The databse, source code, and score files would be available upon the acceptance of the paper.
diff --git a/README.rst b/README.rst
new file mode 100644
index 0000000..d0779e2
--- /dev/null
+++ b/README.rst
@@ -0,0 +1,53 @@
+.. vim: set fileencoding=utf-8 :
+.. Mon 03 Jul 2017 11:50:06 CEST
+
+.. image:: http://img.shields.io/badge/docs-stable-yellow.svg
+ :target: http://beatubulatest.lab.idiap.ch/private/docs/bob/bob.paper.mccnn.tifs2018/stable/index.html
+.. image:: http://img.shields.io/badge/docs-latest-orange.svg
+ :target: http://beatubulatest.lab.idiap.ch/private/docs/bob/bob.paper.mccnn.tifs2018/master/index.html
+.. image:: https://gitlab.idiap.ch/bob/bob.paper.mccnn.tifs2018/badges/master/build.svg
+ :target: https://gitlab.idiap.ch/bob/bob.paper.mccnn.tifs2018/commits/master
+.. image:: https://gitlab.idiap.ch/bob/bob.paper.mccnn.tifs2018/badges/master/coverage.svg
+ :target: https://gitlab.idiap.ch/bob/bob.paper.mccnn.tifs2018/commits/master
+.. image:: https://img.shields.io/badge/gitlab-project-0000c0.svg
+ :target: https://gitlab.idiap.ch/bob/bob.paper.mccnn.tifs2018
+.. image:: http://img.shields.io/pypi/v/bob.paper.mccnn.tifs2018.svg
+ :target: https://pypi.python.org/pypi/bob.paper.mccnn.tifs2018
+
+
+============================================
+Face PAD using Multi-Channel CNN
+============================================
+
+This package is part of the Bob_ toolkit and it allows to reproduce the experimental results published in the following paper::
+
+ @inproceedings{GeorgeTIFS2019,
+ author = {Anjith George, Zohreh Mostaani, David Geissenbuhler, Olegs Nikisins, Andre Anjos, Sebastien Marcel},
+ title = {Biometric Face Presentation Attack Detection with Multi-Channel Convolutional Neural Network},
+ year = {2019},
+ booktitle = {TIFS 2019},
+ }
+
+If you use this package and/or its results, please cite the paper.
+
+Installation
+------------
+
+Follow our `installation`_ instructions. Then, using the Python interpreter
+provided by the distribution, build this package with::
+
+ $ buildout
+
+
+Contact
+-------
+
+For questions or reporting issues to this software package, contact our
+development `mailing list`_.
+
+
+.. Place your references here:
+.. _bob: https://www.idiap.ch/software/bob
+.. _installation: https://www.idiap.ch/software/bob/install
+.. _mailing list: https://www.idiap.ch/software/bob/discuss
+.. _bob package development: https://www.idiap.ch/software/bob/docs/bob/bob.extension/master/
diff --git a/bob/__init__.py b/bob/__init__.py
new file mode 100644
index 0000000..2ab1e28
--- /dev/null
+++ b/bob/__init__.py
@@ -0,0 +1,3 @@
+# see https://docs.python.org/3/library/pkgutil.html
+from pkgutil import extend_path
+__path__ = extend_path(__path__, __name__)
diff --git a/bob/paper/__init__.py b/bob/paper/__init__.py
new file mode 100644
index 0000000..2ab1e28
--- /dev/null
+++ b/bob/paper/__init__.py
@@ -0,0 +1,3 @@
+# see https://docs.python.org/3/library/pkgutil.html
+from pkgutil import extend_path
+__path__ = extend_path(__path__, __name__)
diff --git a/bob/paper/mccnn/__init__.py b/bob/paper/mccnn/__init__.py
new file mode 100644
index 0000000..2ab1e28
--- /dev/null
+++ b/bob/paper/mccnn/__init__.py
@@ -0,0 +1,3 @@
+# see https://docs.python.org/3/library/pkgutil.html
+from pkgutil import extend_path
+__path__ = extend_path(__path__, __name__)
diff --git a/bob/paper/mccnn/tifs2018/__init__.py b/bob/paper/mccnn/tifs2018/__init__.py
new file mode 100644
index 0000000..b6752da
--- /dev/null
+++ b/bob/paper/mccnn/tifs2018/__init__.py
@@ -0,0 +1,12 @@
+from . import script
+
+def get_config():
+ """Returns a string containing the configuration information.
+ """
+
+ import bob.extension
+ return bob.extension.get_config(__name__)
+
+
+# gets sphinx autodoc done right - don't remove it
+__all__ = [_ for _ in dir() if not _.startswith('_')]
diff --git a/bob/paper/mccnn/tifs2018/config/__init__.py b/bob/paper/mccnn/tifs2018/config/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/bob/paper/mccnn/tifs2018/config/preprocessor/__init__.py b/bob/paper/mccnn/tifs2018/config/preprocessor/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/bob/paper/mccnn/tifs2018/config/preprocessor/mc_preprocessor.py b/bob/paper/mccnn/tifs2018/config/preprocessor/mc_preprocessor.py
new file mode 100644
index 0000000..5d8ceba
--- /dev/null
+++ b/bob/paper/mccnn/tifs2018/config/preprocessor/mc_preprocessor.py
@@ -0,0 +1,87 @@
+
+# =============================================================================
+# define instance of the preprocessor:
+
+from bob.pad.face.preprocessor import VideoFaceCropAlignBlockPatch
+
+from bob.pad.face.preprocessor import FaceCropAlign
+
+from bob.bio.video.preprocessor import Wrapper
+
+from bob.bio.video.utils import FrameSelector
+
+from bob.pad.face.preprocessor.FaceCropAlign import auto_norm_image as _norm_func
+
+from torchvision import transforms
+
+from bob.learn.pytorch.datasets import ChannelSelect
+
+# names of the channels to process:
+_channel_names = ['color','depth','infrared','thermal']
+
+# dictionary containing preprocessors for all channels:
+_preprocessors = {}
+
+"""
+Preprocessor to be used for Color channel.
+"""
+FACE_SIZE = 128 # The size of the resulting face
+RGB_OUTPUT_FLAG = False # BW output
+USE_FACE_ALIGNMENT = True # use annotations
+MAX_IMAGE_SIZE = None # no limiting here
+FACE_DETECTION_METHOD = 'mtcnn' # use ANNOTATIONS
+MIN_FACE_SIZE = 50 # skip small faces
+ALIGNMENT_TYPE = 'lightcnn'
+
+_image_preprocessor = FaceCropAlign(face_size = FACE_SIZE,
+ rgb_output_flag = RGB_OUTPUT_FLAG,
+ use_face_alignment = USE_FACE_ALIGNMENT,
+ alignment_type =ALIGNMENT_TYPE,
+ max_image_size = MAX_IMAGE_SIZE,
+ face_detection_method = FACE_DETECTION_METHOD,
+ min_face_size = MIN_FACE_SIZE)
+
+_frame_selector = FrameSelector(selection_style = "all")
+
+_preprocessor_rgb = Wrapper(preprocessor = _image_preprocessor,
+ frame_selector = _frame_selector)
+
+_preprocessors[_channel_names[0]] = _preprocessor_rgb
+
+"""
+Preprocessor to be used for Depth, Infrared or Thermal channels:
+"""
+FACE_SIZE = 128 # The size of the resulting face
+RGB_OUTPUT_FLAG = False # Gray-scale output
+USE_FACE_ALIGNMENT = True # use annotations
+MAX_IMAGE_SIZE = None # no limiting here
+FACE_DETECTION_METHOD = None # use annotations
+MIN_FACE_SIZE = 50 # skip small faces
+NORMALIZATION_FUNCTION = _norm_func
+NORMALIZATION_FUNCTION_KWARGS = {}
+NORMALIZATION_FUNCTION_KWARGS = {'n_sigma':3.0, 'norm_method':'MAD'}
+
+_image_preprocessor_ir = FaceCropAlign(face_size = FACE_SIZE,
+ rgb_output_flag = RGB_OUTPUT_FLAG,
+ use_face_alignment = USE_FACE_ALIGNMENT,
+ alignment_type =ALIGNMENT_TYPE,
+ max_image_size = MAX_IMAGE_SIZE,
+ face_detection_method = FACE_DETECTION_METHOD,
+ min_face_size = MIN_FACE_SIZE,
+ normalization_function = NORMALIZATION_FUNCTION,
+ normalization_function_kwargs = NORMALIZATION_FUNCTION_KWARGS)
+
+_preprocessor_ir = Wrapper(preprocessor = _image_preprocessor_ir,
+ frame_selector = _frame_selector)
+
+_preprocessors[_channel_names[1]] = _preprocessor_ir
+
+
+_preprocessors[_channel_names[2]] = _preprocessor_ir
+
+_preprocessors[_channel_names[3]] = _preprocessor_ir
+
+
+mc_preprocessor = VideoFaceCropAlignBlockPatch(preprocessors = _preprocessors,
+ channel_names = _channel_names,
+ return_multi_channel_flag = True)
diff --git a/bob/paper/mccnn/tifs2018/script/__init__.py b/bob/paper/mccnn/tifs2018/script/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/bob/paper/mccnn/tifs2018/script/version.py b/bob/paper/mccnn/tifs2018/script/version.py
new file mode 100644
index 0000000..6d1f941
--- /dev/null
+++ b/bob/paper/mccnn/tifs2018/script/version.py
@@ -0,0 +1,13 @@
+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+
+"""
+Print the text
+"""
+
+def main():
+ """Print the text"""
+
+ print ("Print test text")
+ return 0
+
diff --git a/bob/paper/mccnn/tifs2018/test.py b/bob/paper/mccnn/tifs2018/test.py
new file mode 100644
index 0000000..ecba988
--- /dev/null
+++ b/bob/paper/mccnn/tifs2018/test.py
@@ -0,0 +1,9 @@
+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+
+"""Test Units
+"""
+
+def test_version():
+ from .script import version
+ assert version.main() == 0
diff --git a/buildout.cfg b/buildout.cfg
new file mode 100644
index 0000000..fbe6a7e
--- /dev/null
+++ b/buildout.cfg
@@ -0,0 +1,14 @@
+; vim: set fileencoding=utf-8 :
+; Fri Dec 23 13:58:08 CET 2016
+
+[buildout]
+parts = scripts
+develop = .
+eggs = bob.paper.mccnn.tifs2018
+extensions = bob.buildout
+newest = false
+verbose = true
+
+[scripts]
+recipe = bob.buildout:scripts
+dependent-scripts = true
\ No newline at end of file
diff --git a/conda/meta.yaml b/conda/meta.yaml
new file mode 100644
index 0000000..69218db
--- /dev/null
+++ b/conda/meta.yaml
@@ -0,0 +1,61 @@
+{% set name = 'bob.paper.mccnn.tifs2018' %}
+{% set project_dir = environ.get('RECIPE_DIR') + '/..' %}
+
+package:
+ name: {{ name }}
+ version: {{ environ.get('BOB_PACKAGE_VERSION', '0.0.1') }}
+
+build:
+ skip: true # [not linux]
+ number: {{ environ.get('BOB_BUILD_NUMBER', 0) }}
+ run_exports:
+ - {{ pin_subpackage(name) }}
+ script:
+ - cd {{ project_dir }}
+ {% if environ.get('BUILD_EGG') %}
+ - python setup.py sdist --formats=zip
+ {% endif %}
+ - python setup.py install --single-version-externally-managed --record record.txt
+
+requirements:
+ # place your build dependencies before the 'host' section
+ host:
+ - python {{ python }}
+ - setuptools {{ setuptools }}
+ - six {{ six }}
+ - numpy
+ - bob.extension
+ - bob.bio.base
+ - bob.bio.video
+ - bob.pad.face
+ - bob.learn.pytorch
+ run:
+ - python
+ - setuptools
+ - six {{ six }}
+ - numpy
+
+test:
+ imports:
+ - {{ name }}
+ commands:
+ # test commands ("script" entry-points) from your package here
+ - nosetests --with-coverage --cover-package={{ name }} -sv {{ name }}
+ - sphinx-build -aEW {{ project_dir }}/doc {{ project_dir }}/sphinx
+ - sphinx-build -aEb doctest {{ project_dir }}/doc sphinx
+ - conda inspect linkages -p $PREFIX {{ name }} # [not win]
+ - conda inspect objects -p $PREFIX {{ name }} # [osx]
+ requires:
+ - bob-devel {{ bob_devel }}.*
+ - nose
+ - coverage
+ - sphinx
+ - sphinx_rtd_theme
+ - gridtk
+ # extend this list with further test-time-only dependencies
+
+about:
+ home: https://www.idiap.ch/software/bob/
+ license: GNU General Public License v3 (GPLv3)
+ summary: Implements tools for reproducing Multi Channel CNN based face PAD experiments.
+ license_family: GPL
diff --git a/doc/conf.py b/doc/conf.py
new file mode 100644
index 0000000..45c1a85
--- /dev/null
+++ b/doc/conf.py
@@ -0,0 +1,269 @@
+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+
+import os
+import sys
+import glob
+import pkg_resources
+
+
+# -- General configuration -----------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+needs_sphinx = '1.3'
+
+# Add any Sphinx extension module names here, as strings. They can be extensions
+# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = [
+ 'sphinx.ext.todo',
+ 'sphinx.ext.coverage',
+ 'sphinx.ext.ifconfig',
+ 'sphinx.ext.autodoc',
+ 'sphinx.ext.autosummary',
+ 'sphinx.ext.doctest',
+ 'sphinx.ext.graphviz',
+ 'sphinx.ext.intersphinx',
+ 'sphinx.ext.napoleon',
+ 'sphinx.ext.viewcode',
+ #'matplotlib.sphinxext.plot_directive'
+ ]
+
+import sphinx
+if sphinx.__version__ >= "1.4.1":
+ extensions.append('sphinx.ext.imgmath')
+ imgmath_image_format = 'svg'
+else:
+ extensions.append('sphinx.ext.pngmath')
+
+# Be picky about warnings
+nitpicky = True
+
+# Ignores stuff we can't easily resolve on other project's sphinx manuals
+nitpick_ignore = []
+
+# Allows the user to override warnings from a separate file
+if os.path.exists('nitpick-exceptions.txt'):
+ for line in open('nitpick-exceptions.txt'):
+ if line.strip() == "" or line.startswith("#"):
+ continue
+ dtype, target = line.split(None, 1)
+ target = target.strip()
+ try: # python 2.x
+ target = unicode(target)
+ except NameError:
+ pass
+ nitpick_ignore.append((dtype, target))
+
+# Always includes todos
+todo_include_todos = True
+
+# Generates auto-summary automatically
+autosummary_generate = True
+
+# Create numbers on figures with captions
+numfig = True
+
+# If we are on OSX, the 'dvipng' path maybe different
+dvipng_osx = '/opt/local/libexec/texlive/binaries/dvipng'
+if os.path.exists(dvipng_osx): pngmath_dvipng = dvipng_osx
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix of source filenames.
+source_suffix = '.rst'
+
+# The encoding of source files.
+#source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'bob.paper.mccnn.tifs2018'
+import time
+copyright = u'%s, Idiap Research Institute' % time.strftime('%Y')
+
+# Grab the setup entry
+distribution = pkg_resources.require(project)[0]
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = distribution.version
+# The full version, including alpha/beta/rc tags.
+release = distribution.version
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+#today = ''
+# Else, today_fmt is used as the format for a strftime call.
+#today_fmt = '%B %d, %Y'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ['links.rst']
+
+# The reST default role (used for this markup: `text`) to use for all documents.
+#default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+#add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+#add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+#show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# A list of ignored prefixes for module index sorting.
+#modindex_common_prefix = []
+
+# Some variables which are useful for generated material
+project_variable = project.replace('.', '_')
+short_description = u'Example for using Bob inside a buildout project'
+owner = [u'Idiap Research Institute']
+
+
+# -- Options for HTML output ---------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages. See the documentation for
+# a list of builtin themes.
+import sphinx_rtd_theme
+html_theme = 'sphinx_rtd_theme'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further. For a list of options available for each theme, see the
+# documentation.
+#html_theme_options = {}
+
+# Add any paths that contain custom themes here, relative to this directory.
+html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
+
+# The name for this set of Sphinx documents. If None, it defaults to
+# "<project> v<release> documentation".
+#html_title = None
+
+# A shorter title for the navigation bar. Default is the same as html_title.
+#html_short_title = project_variable
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+html_logo = 'img/logo.png'
+
+# The name of an image file (within the static path) to use as favicon of the
+# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+html_favicon = 'img/favicon.ico'
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+#html_static_path = ['_static']
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
+# using the given strftime format.
+#html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+#html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+#html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+#html_additional_pages = {}
+
+# If false, no module index is generated.
+#html_domain_indices = True
+
+# If false, no index is generated.
+#html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+#html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+#html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
+#html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
+#html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it. The value of this option must be the
+# base URL from which the finished HTML is served.
+#html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+#html_file_suffix = None
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = project_variable + u'_doc'
+
+
+# -- Post configuration --------------------------------------------------------
+
+# Included after all input documents
+rst_epilog = """
+.. |project| replace:: Bob
+.. |version| replace:: %s
+.. |current-year| date:: %%Y
+""" % (version,)
+
+# Default processing flags for sphinx
+autoclass_content = 'class'
+autodoc_member_order = 'bysource'
+autodoc_default_flags = [
+ 'members',
+ 'undoc-members',
+ 'inherited-members',
+ 'show-inheritance',
+ ]
+
+# For inter-documentation mapping:
+from bob.extension.utils import link_documentation, load_requirements
+sphinx_requirements = "extra-intersphinx.txt"
+if os.path.exists(sphinx_requirements):
+ intersphinx_mapping = link_documentation(
+ additional_packages=['python','numpy'] + \
+ load_requirements(sphinx_requirements)
+ )
+else:
+ intersphinx_mapping = link_documentation()
+
+
+# We want to remove all private (i.e. _. or __.__) members
+# that are not in the list of accepted functions
+accepted_private_functions = ['__array__']
+
+def member_function_test(app, what, name, obj, skip, options):
+ # test if we have a private function
+ if len(name) > 1 and name[0] == '_':
+ # test if this private function should be allowed
+ if name not in accepted_private_functions:
+ # omit privat functions that are not in the list of accepted private functions
+ return skip
+ else:
+ # test if the method is documented
+ if not hasattr(obj, '__doc__') or not obj.__doc__:
+ return skip
+ return False
+
+def setup(app):
+ app.connect('autodoc-skip-member', member_function_test)
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diff --git a/doc/index.rst b/doc/index.rst
new file mode 100644
index 0000000..bc56048
--- /dev/null
+++ b/doc/index.rst
@@ -0,0 +1,32 @@
+.. vim: set fileencoding=utf-8 :
+.. Andre Anjos <andre.anjos@idiap.ch>
+.. Mon 13 Aug 2012 12:36:40 CEST
+
+.. _bob.paper.mccnn.tifs2018:
+
+============================================
+Face PAD using Multi-Channel CNNs
+============================================
+
+This package is part of the Bob_ toolkit and it allows to reproduce the experimental results published in the following paper::
+
+ @inproceedings{GeorgeTIFS2019,
+ author = {Anjith George, Zohreh Mostaani, David Geissenbuhler, Olegs Nikisins, Andre Anjos, Sebastien Marcel},
+ title = {Biometric Face Presentation Attack Detection with Multi-Channel Convolutional Neural Network},
+ year = {2019},
+ booktitle = {TIFS 2019},
+ }
+
+If you use this package and/or its results, please cite the paper.
+
+User guide
+---------------------
+
+.. toctree::
+ :maxdepth: 2
+
+ references
+
+
+.. include:: links.rst
+
diff --git a/doc/links.rst b/doc/links.rst
new file mode 100644
index 0000000..9043c68
--- /dev/null
+++ b/doc/links.rst
@@ -0,0 +1,18 @@
+
+
+.. This file contains all links we use for documentation in a centralized place
+
+
+.. _idiap: http://www.idiap.ch
+.. _bob: http://www.idiap.ch/software/bob
+.. _buildout: http://www.buildout.org
+.. _pypi: http://pypi.python.org
+.. _installation: https://www.idiap.ch/software/bob/install
+.. _bob.pad.base: https://pypi.python.org/pypi/bob.pad.base
+.. _replayattack: https://www.idiap.ch/dataset/replayattack
+.. _replay-mobile: https://www.idiap.ch/dataset/replay-mobile
+.. _dependencies: https://gitlab.idiap.ch/bob/bob/wikis/Dependencies
+.. _MSU MFSD: http://biometrics.cse.msu.edu/Publications/Databases/MSUMobileFaceSpoofing/index.htm
+.. _MIFS: http://www.antitza.com/makeup-datasets.html
+.. _CELEBA: http://mmlab.ie.cuhk.edu.hk/projects/CelebA.html
+
diff --git a/doc/references.rst b/doc/references.rst
new file mode 100644
index 0000000..0b5ae55
--- /dev/null
+++ b/doc/references.rst
@@ -0,0 +1,8 @@
+.. vim: set fileencoding=utf-8 :
+
+===========
+References
+===========
+
+.. [GMGNAM19] *A. George, Z. Mostaani, D. Geissenbuhler, O. Nikisins, A. Anjos, S. Marcel*, **Biometric Face Presentation Attack Detection with Multi-Channel Convolutional Neural Network**,
+ in: Submitted to: IEEE Transactions on Information Forensics & Security.
\ No newline at end of file
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..81f7a46
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,7 @@
+setuptools
+six
+numpy
+bob.bio.base
+bob.bio.video
+bob.pad.face
+bob.learn.pytorch
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..027573b
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,116 @@
+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+# Andre Anjos <andre.anjos@idiap.ch>
+# Mon 16 Apr 08:18:08 2012 CEST
+#
+# Copyright (C) Idiap Research Institute, Martigny, Switzerland
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, version 3 of the License.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+# This file contains the python (distutils/setuptools) instructions so your
+# package can be installed on **any** host system. It defines some basic
+# information like the package name for instance, or its homepage.
+#
+# It also defines which other packages this python package depends on and that
+# are required for this package's operation. The python subsystem will make
+# sure all dependent packages are installed or will install them for you upon
+# the installation of this package.
+#
+# The 'buildout' system we use here will go further and wrap this package in
+# such a way to create an isolated python working environment. Buildout will
+# make sure that dependencies which are not yet installed do get installed, but
+# **without** requiring administrative privileges on the host system. This
+# allows you to test your package with new python dependencies w/o requiring
+# administrative interventions.
+
+from setuptools import setup, dist
+dist.Distribution(dict(setup_requires = ['bob.extension']))
+
+# load the requirements.txt for additional requirements
+from bob.extension.utils import load_requirements, find_packages
+install_requires = load_requirements()
+
+# The only thing we do in this file is to call the setup() function with all
+# parameters that define our package.
+setup(
+
+ # This is the basic information about your project. Modify all this
+ # information before releasing code publicly.
+ name = 'bob.paper.mccnn.tifs2018',
+ version = open("version.txt").read().rstrip(),
+ description = 'Package allowing to reproduce experiments from the paper "Biometric Face Presentation Attack Detection with Multi-Channel Convolutional Neural Network"',
+
+ url = 'https://gitlab.idiap.ch/bob/bob.paper.mccnn.tifs2018',
+ license = 'GPLv3',
+ author = 'Anjith George',
+ author_email = 'anjith.george@idiap.ch',
+ keywords = 'bob',
+
+ # If you have a better, long description of your package, place it on the
+ # 'doc' directory and then hook it here
+ long_description = open('README.rst').read(),
+
+ # This line is required for any distutils based packaging.
+ # It will find all package-data inside the 'bob' directory.
+ packages = find_packages('bob'),
+ include_package_data = True,
+
+ # This line defines which packages should be installed when you "install"
+ # this package. All packages that are mentioned here, but are not installed
+ # on the current system will be installed locally and only visible to the
+ # scripts of this package. Don't worry - You won't need administrative
+ # privileges when using buildout.
+ install_requires = install_requires,
+
+ # This entry defines which scripts you will have inside the 'bin' directory
+ # once you install the package (or run 'bin/buildout'). The order of each
+ # entry under 'console_scripts' is like this:
+ # script-name-at-bin-directory = module.at.your.library:function
+ #
+ # The module.at.your.library is the python file within your library, using
+ # the python syntax for directories (i.e., a '.' instead of '/' or '\').
+ # This syntax also omits the '.py' extension of the filename. So, a file
+ # installed under 'example/foo.py' that contains a function which
+ # implements the 'main()' function of particular script you want to have
+ # should be referred as 'example.foo:main'.
+ #
+ # In this simple example we will create a single program that will print
+ # the version of bob.
+ entry_points = {
+
+ # scripts should be declared using this entry:
+ 'console_scripts' : [
+ 'bob_example_project_version.py = bob.paper.mccnn.tifs2018.script.version:main',
+ ],
+
+ # registered preprocessors:
+ 'bob.pad.preprocessor': [
+ 'mc-face-preprocessor = bob.paper.mccnn.tifs2018.config.preprocessor.mc_preprocessor:mc_preprocessor', # returns Multi channel aligned face images
+ ],
+
+
+ },
+
+ # Classifiers are important if you plan to distribute this package through
+ # PyPI. You can find the complete list of classifiers that are valid and
+ # useful here (http://pypi.python.org/pypi?%3Aaction=list_classifiers).
+ classifiers = [
+ 'Framework :: Bob',
+ 'Development Status :: 3 - Alpha',
+ 'Intended Audience :: Developers',
+ 'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+ 'Natural Language :: English',
+ 'Programming Language :: Python',
+ 'Topic :: Scientific/Engineering :: Artificial Intelligence',
+ ],
+)
diff --git a/version.txt b/version.txt
new file mode 100644
index 0000000..8ea4f48
--- /dev/null
+++ b/version.txt
@@ -0,0 +1 @@
+0.0.1a0
--
GitLab