Commit 4f06d408 authored by Amir MOHAMMADI's avatar Amir MOHAMMADI

Merge branch 'condapackage' [skip ci]

parents cd33325f 22562995
Pipeline #15941 skipped
......@@ -17,3 +17,4 @@ dist
build
*.egg
src/
record.txt
# This build file heavily uses template features from YAML so it is generic
# enough for any Bob project. Don't modify it unless you know what you're
# doing.
# This build file uses template features from YAML so it is generic enough for
# any Bob project. Don't modify it unless you know what you're doing.
# Definition of global variables (all stages)
variables:
CONDA_ROOT: "${CI_PROJECT_DIR}/miniconda"
# Definition of our build pipeline
# Definition of our build pipeline order
stages:
- build
- test
- docs
- wheels
- deploy
- pypi
# ---------
# Templates
# ---------
# Template for the build stage
# Needs to run on all supported architectures, platforms and python versions
# Build targets
.build_template: &build_job
stage: build
before_script:
- git clean -ffdx
- mkdir _ci
- curl --silent "https://gitlab.idiap.ch/bob/bob.admin/raw/master/gitlab/install.sh" > _ci/install.sh
- curl --silent "https://gitlab.idiap.ch/bob/bob.admin/raw/condapackage/gitlab/install.sh" > _ci/install.sh
- chmod 755 _ci/install.sh
- ./_ci/install.sh _ci #updates
- ./_ci/install.sh _ci condapackage #installs ci support scripts
- ./_ci/before_build.sh
script:
- ./_ci/build.sh
after_script:
- ./_ci/after_build.sh
artifacts:
expire_in: 1 week
cache: &build_caches
paths:
- _ci/
- dist/
- sphinx/
# Template for the test stage - re-installs from uploaded wheels
# Needs to run on all supported architectures, platforms and python versions
.test_template: &test_job
stage: test
before_script:
- ./_ci/install.sh _ci #updates
- ./_ci/before_test.sh
script:
- ./_ci/test.sh
after_script:
- ./_ci/after_test.sh
# Template for the wheel uploading stage
# Needs to run against all combinations of python and operating systems
.wheels_template: &wheels_job
stage: wheels
environment: intranet
only:
- master
- /^v\d+\.\d+\.\d+([abc]\d*)?$/ # PEP-440 compliant version (tags)
before_script:
- ./_ci/install.sh _ci #updates
- ./_ci/before_wheels.sh
script:
- ./_ci/wheels.sh
after_script:
- ./_ci/after_wheels.sh
# Template for (latest) documentation upload stage
# Only one real job needs to do this
.docs_template: &docs_job
stage: docs
environment: intranet
only:
- master
before_script:
- ./_ci/install.sh _ci #updates
- ./_ci/before_docs.sh
script:
- ./_ci/docs.sh
after_script:
- ./_ci/after_docs.sh
# Template for the deployment stage - re-installs from uploaded wheels
# Needs to run on a single architecture only
# Will deploy your package to PyPI and other required services
# Only runs for tags
.deploy_template: &deploy_job
stage: deploy
environment: internet
only:
- /^v\d+\.\d+\.\d+([abc]\d*)?$/ # PEP-440 compliant version (tags)
except:
- branches
before_script:
- ./_ci/install.sh _ci #updates
- ./_ci/before_deploy.sh
script:
- ./_ci/deploy.sh
after_script:
- ./_ci/after_deploy.sh
- miniconda.sh
- ${CONDA_ROOT}/pkgs/*.tar.bz2
- ${CONDA_ROOT}/pkgs/urls.txt
# -------------
# Build Targets
# -------------
# Linux + Python 2.7: Builds, tests, uploads wheel and deploys (if needed)
build_linux_27:
.build_linux_template: &linux_build_job
<<: *build_job
variables: &linux_27_build_variables
PYTHON_VERSION: "2.7"
tags:
- conda-linux
test_linux_27:
<<: *test_job
variables: *linux_27_build_variables
dependencies:
- build_linux_27
tags:
- conda-linux
wheels_linux_27:
<<: *wheels_job
variables: *linux_27_build_variables
dependencies:
- build_linux_27
tags:
- conda-linux
deploy_linux_27:
<<: *deploy_job
variables: *linux_27_build_variables
dependencies:
- build_linux_27
tags:
- conda-linux
- docker
image: continuumio/conda-concourse-ci
artifacts:
expire_in: 1 week
paths:
- _ci/
- ${CONDA_ROOT}/conda-bld/linux-64/*.tar.bz2
cache:
<<: *build_caches
key: "linux-cache"
# Linux + Python 3.5: Builds, tests and uploads wheel
build_linux_35:
.build_macosx_template: &macosx_build_job
<<: *build_job
variables: &linux_35_build_variables
PYTHON_VERSION: "3.5"
tags:
- conda-linux
test_linux_35:
<<: *test_job
variables: *linux_35_build_variables
dependencies:
- build_linux_35
tags:
- conda-linux
- macosx
artifacts:
expire_in: 1 week
paths:
- _ci/
- ${CONDA_ROOT}/conda-bld/osx-64/*.tar.bz2
cache:
<<: *build_caches
key: "macosx-cache"
wheels_linux_35:
<<: *wheels_job
variables: *linux_35_build_variables
dependencies:
- build_linux_35
tags:
- conda-linux
docs_linux_35:
<<: *docs_job
variables: *linux_35_build_variables
dependencies:
- build_linux_35
tags:
- conda-linux
build_linux_27:
<<: *linux_build_job
variables:
PYTHON_VERSION: "2.7"
# Linux + Python 3.6: Builds and tests
build_linux_36:
<<: *build_job
variables: &linux_36_build_variables
<<: *linux_build_job
variables:
PYTHON_VERSION: "3.6"
tags:
- conda-linux
test_linux_36:
<<: *test_job
variables: *linux_36_build_variables
dependencies:
- build_linux_36
tags:
- conda-linux
wheels_linux_36:
<<: *wheels_job
variables: *linux_36_build_variables
dependencies:
- build_linux_36
tags:
- conda-linux
BUILD_EGG: "true"
artifacts:
expire_in: 1 week
paths:
- _ci/
- dist/*.zip
- sphinx
- ${CONDA_ROOT}/conda-bld/linux-64/*.tar.bz2
# Mac OSX + Python 2.7: Builds and tests
build_macosx_27:
<<: *build_job
variables: &macosx_27_build_variables
<<: *macosx_build_job
variables:
PYTHON_VERSION: "2.7"
tags:
- conda-macosx
test_macosx_27:
<<: *test_job
variables: *macosx_27_build_variables
dependencies:
- build_macosx_27
tags:
- conda-macosx
wheels_macosx_27:
<<: *wheels_job
variables: *macosx_27_build_variables
dependencies:
- build_macosx_27
tags:
- conda-macosx
build_macosx_36:
<<: *macosx_build_job
variables:
PYTHON_VERSION: "3.6"
# Mac OSX + Python 3.5: Builds and tests
build_macosx_35:
<<: *build_job
variables: &macosx_35_build_variables
PYTHON_VERSION: "3.5"
tags:
- conda-macosx
test_macosx_35:
<<: *test_job
variables: *macosx_35_build_variables
# Deploy targets
.deploy_template: &deploy_job
stage: deploy
before_script:
- ./_ci/install.sh _ci condapackage #updates ci support scripts
script:
- ./_ci/deploy.sh
dependencies:
- build_macosx_35
- build_linux_27
- build_linux_36
- build_macosx_27
- build_macosx_36
tags:
- conda-macosx
- deployer
wheels_macosx_35:
<<: *wheels_job
variables: *macosx_35_build_variables
dependencies:
- build_macosx_35
tags:
- conda-macosx
deploy_beta:
<<: *deploy_job
environment: beta
only:
- master
- condapackage
# Mac OSX + Python 3.6: Builds and tests
build_macosx_36:
<<: *build_job
variables: &macosx_36_build_variables
PYTHON_VERSION: "3.6"
tags:
- conda-macosx
test_macosx_36:
<<: *test_job
variables: *macosx_36_build_variables
dependencies:
- build_macosx_36
tags:
- conda-macosx
deploy_stable:
<<: *deploy_job
environment: stable
only:
- /^v\d+\.\d+\.\d+([abc]\d*)?$/ # PEP-440 compliant version (tags)
except:
- branches
wheels_macosx_36:
<<: *wheels_job
variables: *macosx_36_build_variables
pypi:
stage: pypi
environment: pypi
only:
- /^v\d+\.\d+\.\d+([abc]\d*)?$/ # PEP-440 compliant version (tags)
except:
- branches
before_script:
- ./_ci/install.sh _ci condapackage #updates ci support scripts
script:
- ./_ci/pypi.sh
dependencies:
- build_macosx_36
- build_linux_36
tags:
- conda-macosx
- deployer
......@@ -126,7 +126,7 @@ double bob::measure::farThreshold(const blitz::Array<double, 1> &negatives,
double epsilon = std::numeric_limits<double>::epsilon();
// handle special case of far == 1 without any iterating
if (far_value >= 1 - epsilon)
return nexttoward(scores(0), scores(0)-1);
return std::nextafter(scores(0), scores(0)-1);
// Reverse negatives so the end is the start. This way the code below will be
// very similar to the implementation in the frrThreshold function. The
......@@ -139,7 +139,7 @@ double bob::measure::farThreshold(const blitz::Array<double, 1> &negatives,
// since the comparison is `if score >= threshold then accept as genuine`, we
// can choose the largest score value + eps as the threshold so that we can
// get for 0% FAR.
double valid_threshold = nexttoward(scores(current_position), scores(current_position)+1);
double valid_threshold = std::nextafter(scores(current_position), scores(current_position)+1);
double current_threshold;
double future_far;
while (current_position < total_count) {
......@@ -181,7 +181,7 @@ double bob::measure::frrThreshold(const blitz::Array<double, 1> &negatives,
double epsilon = std::numeric_limits<double>::epsilon();
// handle special case of frr == 1 without any iterating
if (frr_value >= 1 - epsilon)
return nexttoward(scores(scores.extent(0)-1), scores(scores.extent(0)-1)+1);
return std::nextafter(scores(scores.extent(0)-1), scores(scores.extent(0)-1)+1);
// Move towards the end of array changing the threshold until we pass the
// desired FRR value. Starting with a threshold that corresponds to FRR == 0.
......
{% set name = 'bob.measure' %}
{% set project_dir = environ.get('RECIPE_DIR') + '/..' %}
package:
name: {{ name }}
version: {{ environ.get('BOB_PACKAGE_VERSION', '0.0.1') }}
build:
entry_points:
- bob_compute_perf.py = bob.measure.script.compute_perf:main
- bob_eval_threshold.py = bob.measure.script.eval_threshold:main
- bob_apply_threshold.py = bob.measure.script.apply_threshold:main
- bob_plot_cmc.py = bob.measure.script.plot_cmc:main
number: {{ environ.get('BOB_BUILD_NUMBER', 0) }}
run_exports:
- {{ pin_subpackage(name) }}
script:
- cd {{ project_dir }}
{% if environ.get('BUILD_EGG') %}
- python setup.py sdist --formats=zip
{% endif %}
- python setup.py install --single-version-externally-managed --record record.txt
requirements:
build:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
- pkg-config {{ pkg_config }}
host:
- python {{ python }}
- setuptools {{ setuptools }}
- bob.extension
- bob.blitz
- bob.core >2.0.4
- bob.math
- bob.io.base
- matplotlib {{ matplotlib }}
- libblitz {{ libblitz }}
- boost {{ boost }}
- numpy {{ numpy }}
- docopt {{ docopt }}
run:
- python
- setuptools
- matplotlib
- boost
- {{ pin_compatible('numpy') }}
- docopt
test:
imports:
- {{ name }}
commands:
- bob_compute_perf.py --help
- bob_eval_threshold.py --help
- bob_apply_threshold.py --help
- bob_plot_cmc.py --help
- nosetests --with-coverage --cover-package={{ name }} -sv {{ name }}
- sphinx-build -aEW {{ project_dir }}/doc {{ project_dir }}/sphinx
- sphinx-build -aEb doctest {{ project_dir }}/doc sphinx
- conda inspect linkages -p $PREFIX {{ name }} # [not win]
- conda inspect objects -p $PREFIX {{ name }} # [osx]
requires:
- bob-devel {{ bob_devel }}.*
- nose
- coverage
- sphinx
- sphinx_rtd_theme
about:
home: https://www.idiap.ch/software/bob/
license: BSD 3-Clause
summary: Bob's evalution metrics
license_family: BSD
......@@ -25,16 +25,10 @@ extensions = [
'sphinx.ext.intersphinx',
'sphinx.ext.napoleon',
'sphinx.ext.viewcode',
'sphinx.ext.mathjax',
'matplotlib.sphinxext.plot_directive'
]
import sphinx
if sphinx.__version__ >= "1.4.1":
extensions.append('sphinx.ext.imgmath')
imgmath_image_format = 'svg'
else:
extensions.append('sphinx.ext.pngmath')
# Be picky about warnings
nitpicky = True
......
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