Doc issues

1. pre-commit alias doesn't work properly

Run

bdt dev checkout bob.bio.base

Error

Traceback (most recent call last):
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/bin/bdt", line 11, in <module>
    sys.exit(main())
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1130, in __call__
    return self.main(*args, **kwargs)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1055, in main
    rv = self.invoke(ctx)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1657, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1657, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1404, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 760, in invoke
    return __callback(*args, **kwargs)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/decorators.py", line 26, in new_func
    return f(get_current_context(), *args, **kwargs)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/bob/devtools/scripts/development.py", line 70, in checkout
    subprocess.check_call(["pre-commit", "install"], cwd=dest)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/subprocess.py", line 368, in check_call
    retcode = call(*popenargs, **kwargs)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/subprocess.py", line 349, in call
    with Popen(*popenargs, **kwargs) as p:
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/subprocess.py", line 951, in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/subprocess.py", line 1821, in _execute_child
    raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'pre-commit'

2. Additional information required regarding virtual packages (I think)

Checkout bob.bio.face and run :

bdt dev create -vv dev

Error:

The reported errors are:
- Encountered problems while solving:
-   - nothing provides __cuda needed by tensorflow-2.7.0-cuda102py310hcf4adbc_0
- 

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/bin/bdt", line 11, in <module>
    sys.exit(main())
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1130, in __call__
    return self.main(*args, **kwargs)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1055, in main
    rv = self.invoke(ctx)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1657, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1657, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 1404, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/click/core.py", line 760, in invoke
    return __callback(*args, **kwargs)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/bob/devtools/scripts/bdt.py", line 43, in _decorator
    value = view_func(*args, **kwargs)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/bob/devtools/scripts/create.py", line 268, in create
    deps = parse_dependencies(recipe_dir, conda_config)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/bob/devtools/build.py", line 333, in parse_dependencies
    metadata = get_rendered_metadata(recipe_dir, config)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/bob/devtools/build.py", line 239, in get_rendered_metadata
    return conda_build.api.render(recipe_dir, config=config)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/conda_build/api.py", line 42, in render
    metadata_tuples = render_recipe(recipe_path, bypass_env_check=bypass_env_check,
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/conda_build/render.py", line 860, in render_recipe
    rendered_metadata = distribute_variants(m, variants,
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/conda_build/render.py", line 763, in distribute_variants
    mv.parse_until_resolved(allow_no_other_outputs=allow_no_other_outputs,
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/conda_build/metadata.py", line 1084, in parse_until_resolved
    self.parse_again(permit_undefined_jinja=False,
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/conda_build/metadata.py", line 1006, in parse_again
    self.meta = parse(self._get_contents(permit_undefined_jinja,
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/conda_build/metadata.py", line 1601, in _get_contents
    rendered = template.render(environment=env)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/jinja2/environment.py", line 1301, in render
    self.environment.handle_exception()
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/jinja2/environment.py", line 936, in handle_exception
    raise rewrite_traceback_stack(source=source)
  File "/remote/idiap.svm/user.active/lcolbois/bob_dev/run_ijbc/bob.bio.face/conda/meta.yaml", line 41, in top-level template code
    - setuptools
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/conda_build/jinja_context.py", line 228, in pin_compatible
    pins, _, _ = get_env_dependencies(m, 'host', m.config.variant)
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/conda_build/render.py", line 138, in get_env_dependencies
    actions = environ.get_install_actions(tmpdir, tuple(dependencies), env,
  File "/idiap/temp/lcolbois/miniconda3/envs/bdt/lib/python3.9/site-packages/boa/cli/mambabuild.py", line 133, in mamba_get_install_actions
    raise err
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {MatchSpec("tensorflow==2.7.0=cuda102py310hcf4adbc_0")}

Possible fix : first run

export CONDA_OVERRIDE_CUDA=11.6

assigned to @amohammadi

changed the description

mentioned in merge request !291 (merged)

closed with merge request !291 (merged)

mentioned in commit dedd5963