Commit 68a56f1b authored by André Anjos's avatar André Anjos 💬

Implemented normalized-cross-correlation algorithm

parent 46073599
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
import numpy
import skimage.feature
from import Algorithm
class Correlate (Algorithm):
"""Correlate probe and model without cropping
The method is based on "cross-correlation" between a model and a probe image.
The difference between this and :py:class:`MiuraMatch` is that **no**
cropping takes place on this implementation. We simply fill the excess
boundary with zeros and extract the valid correlation region between the
probe and the model using :py:func:`skimage.feature.match_template`.
def __init__(self):
# call base class constructor
multiple_model_scoring = None,
multiple_probe_scoring = None
def enroll(self, enroll_features):
"""Enrolls the model by computing an average graph for each model"""
# return the generated model
return numpy.array(enroll_features)
def score(self, model, probe):
"""Computes the score between the probe and the model.
model (numpy.ndarray): The model of the user to test the probe agains
probe (numpy.ndarray): The probe to test
float: Value between 0 and 0.5, larger value means a better match
if len(model.shape) == 2:
model = numpy.array([model])
scores = []
# iterate over all models for a given individual
for md in model:
R = md.astype(numpy.float64)
Nm = skimage.feature.match_template(I, R)
# figures out where the maximum is on the resulting matrix
t0, s0 = numpy.unravel_index(Nm.argmax(), Nm.shape)
# this is our output
return numpy.mean(scores)
......@@ -94,8 +94,6 @@ class MiuraMatch (Algorithm):
if len(model.shape) == 2:
model = numpy.array([model])
n_models = model.shape[0]
scores = []
# iterate over all models for a given individual
......@@ -103,7 +101,7 @@ class MiuraMatch (Algorithm):
# erode model by (ch, cw)
R = md.astype(numpy.float64)
h, w = R.shape
h, w = R.shape #same as I
crop_R = R[,]
# correlates using scipy - fastest option available iff the and
......@@ -127,6 +125,6 @@ class MiuraMatch (Algorithm):
# normalizes the output by the number of pixels lit on the input
# matrices, taking into consideration the surface that produced the
# result (i.e., the eroded model and part of the probe)
scores.append(Nmm/(sum(sum(crop_R)) + sum(sum(I[t0:t0+h-2*, s0:s0+w-2*]))))
scores.append(Nmm/(crop_R.sum() + I[t0:t0+h-2*, s0:s0+w-2*].sum()))
return numpy.mean(scores)
from .MiuraMatch import MiuraMatch
from .Correlate import Correlate
from .HammingDistance import HammingDistance
# gets sphinx autodoc done right - don't remove it
def __appropriate__(*args):
"""Says object was actually declared here, an not on the import module.
*args: An iterable of objects to modify
Resolves `Sphinx referencing issues
for obj in args: obj.__module__ = __name__
__all__ = [_ for _ in dir() if not _.startswith('_')]
......@@ -343,6 +343,25 @@ def test_miura_match():
assert numpy.isclose(score_imp, 0.172906739278421)
def test_correlate():
#Match Ratio method against Matlab reference
template_filename = F(('algorithms', '0001_2_1_120509-135338.mat'))
probe_gen_filename = F(('algorithms', '0001_2_2_120509-135558.mat'))
probe_imp_filename = F(('algorithms', '0003_2_1_120509-141255.mat'))
template_vein =
probe_gen_vein =
probe_imp_vein =
from ..algorithm.Correlate import Correlate
C = Correlate()
score_gen = C.score(template_vein, probe_gen_vein)
# we don't check here - no templates
def test_assert_points():
# Tests that point assertion works as expected
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