bob.bio.vein issueshttps://gitlab.idiap.ch/bob/bob.bio.vein/-/issues2018-05-11T07:44:39Zhttps://gitlab.idiap.ch/bob/bob.bio.vein/-/issues/8Change function names in MR !17 to lower-case with underscores2018-05-11T07:44:39ZAndré AnjosChange function names in MR !17 to lower-case with underscoresTeodors EGLITISTeodors EGLITIShttps://gitlab.idiap.ch/bob/bob.bio.vein/-/issues/7Convert .npy and .png files in MR !17 to HDF52018-05-11T07:44:39ZAndré AnjosConvert .npy and .png files in MR !17 to HDF5Teodors EGLITISTeodors EGLITIShttps://gitlab.idiap.ch/bob/bob.bio.vein/-/issues/6Tests skipped in master branch -- database is neither a resource for a 'datab...2018-05-11T07:44:39ZTeodors EGLITISTests skipped in master branch -- database is neither a resource for a 'database', nor an existing configuration fileTests for the databases using the new approach -- ``bob.bio.config`` are skipped:
```
bob.bio.vein.tests.test_databases.test_utfvp ... SKIP: Skipping test since the database bob.db.utfvp seems not to be available: The given command l...Tests for the databases using the new approach -- ``bob.bio.config`` are skipped:
```
bob.bio.vein.tests.test_databases.test_utfvp ... SKIP: Skipping test since the database bob.db.utfvp seems not to be available: The given command line option 'utfvp' is neither a resource for a 'database', nor an existing configuration file, nor could be interpreted as a command (error: name 'utfvp' is not defined)
bob.bio.vein.tests.test_databases.test_verafinger ... SKIP: Skipping test since the database bob.db.verafinger seems not to be available: The given command line option 'verafinger' is neither a resource for a 'database', nor an existing configuration file, nor could be interpreted as a command (error: name 'verafinger' is not defined)
```
https://gitlab.idiap.ch/bob/bob.bio.vein/builds/16343
Question is -- how this should be resolved and what would be a proper way to write tests?André AnjosAndré Anjoshttps://gitlab.idiap.ch/bob/bob.bio.vein/-/issues/5Can' t build locally `package-update` - **suggestions**?2018-05-11T07:44:39ZTeodors EGLITISCan' t build locally `package-update` - **suggestions**?I tried to build locally from branch `package-update` (after I merged branch `master` in to `package-update`), but get the error:
```
Makefile:76: recipe for target 'all' failed
make: *** [all] Error 2
error: CMake compilation stoppe...I tried to build locally from branch `package-update` (after I merged branch `master` in to `package-update`), but get the error:
```
Makefile:76: recipe for target 'all' failed
make: *** [all] Error 2
error: CMake compilation stopped with an error; stopping ...
While:
Installing.
Processing develop directory '/remote/idiap.svm/home.active/teglitis/Desktop/BOB/bob.bio.vein/src/bob.math'.
An internal error occurred due to a bug in either zc.buildout or in a
recipe being used:
Traceback (most recent call last):
File "/remote/idiap.svm/home.active/teglitis/Desktop/BOB/bob.bio.vein/eggs/zc.buildout-2.5.3-py2.7.egg/zc/buildout/buildout.py", line 1995, in main
getattr(buildout, command)(args)
File "/remote/idiap.svm/home.active/teglitis/Desktop/BOB/bob.bio.vein/eggs/zc.buildout-2.5.3-py2.7.egg/zc/buildout/buildout.py", line 528, in install
installed_develop_eggs = self._develop()
File "/remote/idiap.svm/home.active/teglitis/Desktop/BOB/bob.bio.vein/eggs/zc.buildout-2.5.3-py2.7.egg/zc/buildout/buildout.py", line 770, in _develop
zc.buildout.easy_install.develop(setup, dest)
File "/remote/idiap.svm/home.active/teglitis/Desktop/BOB/bob.bio.vein/eggs/bob.buildout-2.0.14-py2.7.egg/bob/buildout/extension.py", line 213, in develop
zc.buildout.easy_install.call_subprocess(args)
File "/remote/idiap.svm/home.active/teglitis/Desktop/BOB/bob.bio.vein/eggs/zc.buildout-2.5.3-py2.7.egg/zc/buildout/easy_install.py", line 160, in call_subprocess
% repr(args)[1:-1])
Exception: Failed to run command:
'/idiap/group/torch5spro/conda/envs/bob-2.3.4-py27_0/bin/python', '/tmp/tmpAtiCK5', '-v', 'develop', '-mxN', '-d', '/remote/idiap.svm/home.active/teglitis/Desktop/BOB/bob.bio.vein/develop-eggs/tmpceAGcmbuild'
```
Commands I executed:
```
git checkout package-update
source /idiap/group/torch5spro/conda/bin/activate bob-2.3.4-py27_0
python bootstrap-buildout.py
./bin/buildout -c develop.cfg
```
**Any suggestions?**
Branch is passing builds online -- https://gitlab.idiap.ch/bob/bob.bio.vein/commit/ba38c3c5dc69dc0d297f201ab1c5a77f567158a1/builds
Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.vein/-/issues/4ERROR: Failure: ImportError (No module named skimage.morphology)2018-05-11T07:44:39ZTeodors EGLITISERROR: Failure: ImportError (No module named skimage.morphology)Again import error in branch `package update`:
```
ERROR: Failure: ImportError (No module named skimage.morphology)
```
```
File "/local/gitlab-runner/builds/6b02994f/0/bob/bob.bio.vein/env/lib/python2.7/site-packages/bob/bio/vein...Again import error in branch `package update`:
```
ERROR: Failure: ImportError (No module named skimage.morphology)
```
```
File "/local/gitlab-runner/builds/6b02994f/0/bob/bob.bio.vein/env/lib/python2.7/site-packages/bob/bio/vein/preprocessors/TopographyCutRoi.py", line 13, in <module>
from skimage.morphology import convex_hull_image
ImportError: No module named skimage.morphology
```
E.g. - https://gitlab.idiap.ch/bob/bob.bio.vein/builds/12936Olegs NIKISINSOlegs NIKISINShttps://gitlab.idiap.ch/bob/bob.bio.vein/-/issues/3Update to performances on documentation2018-05-11T07:44:39ZAndré AnjosUpdate to performances on documentation@pferrez provided the following table: [baselines.xlsx](/uploads/767d9c32c64d0bf612174913140d0815/baselines.xlsx)
It would be good to update the results on the documentation.@pferrez provided the following table: [baselines.xlsx](/uploads/767d9c32c64d0bf612174913140d0815/baselines.xlsx)
It would be good to update the results on the documentation.https://gitlab.idiap.ch/bob/bob.bio.vein/-/issues/2Random process on RepeatedLineTracking algorithm is not reproducible2018-05-11T07:44:39ZAndré AnjosRandom process on RepeatedLineTracking algorithm is not reproducibleThere is a random walk inside this algorithm, with an unparameterized seed which makes it less reproducible on each try:
https://gitlab.idiap.ch/bob/bob.bio.vein/blob/master/bob/bio/vein/extractors/RepeatedLineTracking.py#L99
It wo...There is a random walk inside this algorithm, with an unparameterized seed which makes it less reproducible on each try:
https://gitlab.idiap.ch/bob/bob.bio.vein/blob/master/bob/bio/vein/extractors/RepeatedLineTracking.py#L99
It would be good to set a seed thorugh a parameter to the constructor.André AnjosAndré Anjos