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Issue created by Amir MOHAMMADI@amohammadiOwner

Many baselines don't run against ATNT

I have tested 2 so far:

$ bob bio pipelines vanilla-biometrics atnt lda
bob.bio.face.config.baseline.helpers@2021-05-18 17:17:07,852 -- WARNING: Annotation type None is not supported. Input images will be fully scaled.
Traceback (most recent call last):
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/bob/pipelines/wrappers.py", line 483, in _fit
    self.estimator = self.estimator.fit(X, y, **fit_params)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/bob/pipelines/wrappers.py", line 201, in fit
    self.estimator = self.estimator.fit(X, **kwargs)
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/transformers/algorithm.py", line 62, in fit
    training_data = split_X_by_y(X, y)
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/transformers/__init__.py", line 9, in split_X_by_y
    for x1, y1 in zip(X, y):
TypeError: 'NoneType' object is not iterable

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "bin/bob", line 22, in <module>
    sys.exit(bob.extension.scripts.main_cli())
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 829, in __call__
    return self.main(*args, **kwargs)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 782, in main
    rv = self.invoke(ctx)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 1066, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 610, in invoke
    return callback(*args, **kwargs)
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/script/vanilla_biometrics.py", line 205, in vanilla_biometrics
    execute_vanilla_biometrics(
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/pipelines/vanilla_biometrics/vanilla_biometrics.py", line 148, in execute_vanilla_biometrics
    _ = compute_scores(post_processed_scores, dask_client)
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/pipelines/vanilla_biometrics/vanilla_biometrics.py", line 23, in compute_scores
    result = result.compute(scheduler=dask_client)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/base.py", line 284, in compute
    (result,) = compute(self, traverse=False, **kwargs)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/base.py", line 566, in compute
    results = schedule(dsk, keys, **kwargs)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 560, in get_sync
    return get_async(
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 503, in get_async
    for key, res_info, failed in queue_get(queue).result():
  File "~/temp/conda/envs/hardening/lib/python3.8/concurrent/futures/_base.py", line 432, in result
    return self.__get_result()
  File "~/temp/conda/envs/hardening/lib/python3.8/concurrent/futures/_base.py", line 388, in __get_result
    raise self._exception
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 545, in submit
    fut.set_result(fn(*args, **kwargs))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 237, in batch_execute_tasks
    return [execute_task(*a) for a in it]
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 237, in <listcomp>
    return [execute_task(*a) for a in it]
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 228, in execute_task
    result = pack_exception(e, dumps)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 223, in execute_task
    result = _execute_task(task, data)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/core.py", line 121, in _execute_task
    return func(*(_execute_task(a, cache) for a in args))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/bob/pipelines/wrappers.py", line 485, in _fit
    raise RuntimeError(
RuntimeError: Something went wrong when fitting SampleWrapper(estimator=AlgorithmTransformer(instance=<bob.bio.base.algorithm.LDA object at 0x7fd497421d90>,
                                             projector_file='~/temp/bob.bio.base.legacy_cache/lda/Projector.hdf5'),
              fit_extra_arguments=(), transform_extra_arguments=()) from DaskWrapper(estimator=SampleWrapper(estimator=AlgorithmTransformer(instance=<bob.bio.base.algorithm.LDA object at 0x7fd497421d90>,
                                                                   projector_file='~/temp/bob.bio.base.legacy_cache/lda/Projector.hdf5'),
                                    fit_extra_arguments=(),
                                    transform_extra_arguments=()))
$ bob bio pipelines vanilla-biometrics atnt facenet-sanderberg
bob.bio.face.config.baseline.helpers@2021-05-18 17:17:23,185 -- WARNING: Annotation type None is not supported. Input images will be fully scaled.
Traceback (most recent call last):
  File "bin/bob", line 22, in <module>
    sys.exit(bob.extension.scripts.main_cli())
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 829, in __call__
    return self.main(*args, **kwargs)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 782, in main
    rv = self.invoke(ctx)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 1066, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/click/core.py", line 610, in invoke
    return callback(*args, **kwargs)
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/script/vanilla_biometrics.py", line 205, in vanilla_biometrics
    execute_vanilla_biometrics(
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/pipelines/vanilla_biometrics/vanilla_biometrics.py", line 148, in execute_vanilla_biometrics
    _ = compute_scores(post_processed_scores, dask_client)
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/pipelines/vanilla_biometrics/vanilla_biometrics.py", line 23, in compute_scores
    result = result.compute(scheduler=dask_client)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/base.py", line 284, in compute
    (result,) = compute(self, traverse=False, **kwargs)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/base.py", line 566, in compute
    results = schedule(dsk, keys, **kwargs)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 560, in get_sync
    return get_async(
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 503, in get_async
    for key, res_info, failed in queue_get(queue).result():
  File "~/temp/conda/envs/hardening/lib/python3.8/concurrent/futures/_base.py", line 432, in result
    return self.__get_result()
  File "~/temp/conda/envs/hardening/lib/python3.8/concurrent/futures/_base.py", line 388, in __get_result
    raise self._exception
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 545, in submit
    fut.set_result(fn(*args, **kwargs))
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 237, in batch_execute_tasks
    return [execute_task(*a) for a in it]
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 237, in <listcomp>
    return [execute_task(*a) for a in it]
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 228, in execute_task
    result = pack_exception(e, dumps)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/local.py", line 223, in execute_task
    result = _execute_task(task, data)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/dask/core.py", line 121, in _execute_task
    return func(*(_execute_task(a, cache) for a in args))
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/pipelines/vanilla_biometrics/abstract_classes.py", line 59, in enroll_samples
    retval.append(self._enroll_sample_set(k))
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/pipelines/vanilla_biometrics/abstract_classes.py", line 66, in _enroll_sample_set
    data = [s.data for s in sampleset.samples]
  File "~/git/bob.project.hardening/src/bob.bio.base/bob/bio/base/pipelines/vanilla_biometrics/abstract_classes.py", line 66, in <listcomp>
    data = [s.data for s in sampleset.samples]
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/bob/pipelines/sample.py", line 136, in __getattribute__
    return super().__getattribute__(name)
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/bob/pipelines/sample.py", line 151, in data
    return self._load()
  File "~/temp/conda/envs/hardening/lib/python3.8/site-packages/bob/pipelines/wrappers.py", line 86, in __call__
    self.output = self.func(X)
  File "~/git/bob.project.hardening/src/bob.bio.face/bob/bio/face/embeddings/tf2_inception_resnet.py", line 75, in transform
    return _transform(X)
  File "~/git/bob.project.hardening/src/bob.bio.face/bob/bio/face/embeddings/tf2_inception_resnet.py", line 61, in _transform
    raise ValueError(
ValueError: Image shape (160, 160, 5) not supported. Expected (None, 160, 160, 3)