From f3f23e735fa45f818027783b73228ded1baf574c Mon Sep 17 00:00:00 2001
From: Amir Mohammadi <amir.mohammadi@idiap.ch>
Date: Fri, 26 Aug 2016 15:12:47 +0200
Subject: [PATCH] Standardise
---
.gitlab-ci.yml | 254 ++++++++++
.travis.yml | 40 --
COPYING | 674 -------------------------
LICENSE | 27 +
MANIFEST.in | 2 +-
README.rst | 47 +-
bob/bio/csu/algorithm/LDAIR.py | 16 -
bob/bio/csu/algorithm/LRPCA.py | 16 -
bob/bio/csu/extractor/LDAIR.py | 16 -
bob/bio/csu/extractor/LRPCA.py | 16 -
bob/bio/csu/preprocessor/LDAIR.py | 16 -
bob/bio/csu/preprocessor/LRPCA.py | 16 -
bob/bio/csu/test/test_algorithms.py | 16 -
bob/bio/csu/test/test_extractors.py | 16 -
bob/bio/csu/test/test_preprocessors.py | 16 -
bob/bio/csu/utils/__init__.py | 16 -
bootstrap-buildout.py | 51 +-
buildout.cfg | 76 +--
develop.cfg | 80 +++
doc/conf.py | 154 +++---
doc/img/logo.png | Bin 11280 -> 6266 bytes
patch/__init__.py | 16 -
setup.py | 42 +-
23 files changed, 499 insertions(+), 1124 deletions(-)
create mode 100644 .gitlab-ci.yml
delete mode 100644 .travis.yml
delete mode 100644 COPYING
create mode 100644 LICENSE
create mode 100644 develop.cfg
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
new file mode 100644
index 0000000..f26a01e
--- /dev/null
+++ b/.gitlab-ci.yml
@@ -0,0 +1,254 @@
+# This build file is defined in two parts: 1) a generic set of instructions you
+# probably **don't** need to change and 2) a part you may have to tune to your
+# project. It heavily uses template features from YAML to help you in only
+# changing a minimal part of it and avoid code duplication to a maximum while
+# still providing a nice pipeline display on your package.
+
+
+# 1) Generic instructions (only change if you know what you're doing)
+# -------------------------------------------------------------------
+
+# Definition of our build pipeline
+stages:
+ - build
+ - test
+ - docs
+ - wheels
+
+
+# Global variables
+variables:
+ CONDA_PREFIX: env
+
+
+# Template for the build stage
+# Needs to run on all supported architectures, platforms and python versions
+.build_template: &build_job
+ stage: build
+ before_script:
+ - git clean -ffdx
+ - curl --silent https://gitlab.idiap.ch/bob/bob/snippets/7/raw | tr -d '\r' > bootstrap-conda.sh
+ - chmod 755 ./bootstrap-conda.sh
+ - ./bootstrap-conda.sh ${CONDA_FOLDER} ${PYTHON_VER} ${CONDA_PREFIX}
+ variables: &build_variables
+ BOB_DOCUMENTATION_SERVER: "http://www.idiap.ch/software/bob/docs/latest/bob/%s/master/"
+ script:
+ - ./bin/buildout
+ - if [ -x ./bin/bob_dbmanage.py ]; then ./bin/bob_dbmanage.py all download --force; fi
+ - ./bin/sphinx-build doc sphinx
+ - ./bin/python setup.py bdist_wheel --python-tag ${WHEEL_TAG}
+ after_script:
+ - rm -rf ${CONDA_PREFIX}
+ artifacts:
+ expire_in: 1 day
+ paths:
+ - bootstrap-conda.sh
+ - dist/
+ - sphinx/
+
+
+# Template for building on a Linux machine
+.build_linux_template: &linux_build_job
+ <<: *build_job
+ variables: &linux_build_variables
+ <<: *build_variables
+ CONDA_FOLDER: "/local/conda"
+ CFLAGS: "-D_GLIBCXX_USE_CXX11_ABI=0 -coverage"
+ CXXFLAGS: "-D_GLIBCXX_USE_CXX11_ABI=0 -coverage"
+
+
+# Template for building on a Mac OSX machine
+.build_mac_template: &macosx_build_job
+ <<: *build_job
+ variables: &macosx_build_variables
+ <<: *build_variables
+ CONDA_FOLDER: "/opt/conda"
+ MACOSX_DEPLOYMENT_TARGET: "10.9"
+ CFLAGS: "-pthread -coverage"
+ CXXFLAGS: "-pthread -coverage"
+ LDFLAGS: "-lpthread"
+
+
+# Template for the test stage - re-install from uploaded wheels
+# Needs to run on all supported architectures, platforms and python versions
+.test_template: &test_job
+ stage: test
+ before_script:
+ - ./bootstrap-conda.sh ${CONDA_FOLDER} ${PYTHON_VER} ${CONDA_PREFIX}
+ - source ${CONDA_FOLDER}/bin/activate ${CONDA_PREFIX}
+ - pip install --use-wheel --no-index --pre dist/*.whl
+ script:
+ - cd ${CONDA_PREFIX}
+ - python -c "from ${CI_PROJECT_NAME} import get_config; print(get_config())"
+ - coverage run --source=${CI_PROJECT_NAME} ./bin/nosetests -sv ${CI_PROJECT_NAME}
+ - coverage report
+ - sphinx-build -b doctest ../doc ../sphinx
+ after_script:
+ - rm -rf ${CONDA_PREFIX}
+
+
+# Template for the wheel uploading stage
+# Needs to run against one combination of python 2.x and 3.x if it is a python
+# only package, otherwise, needs to run in both pythons to all supported
+# architectures (Linux and Mac OSX 64-bit)
+.wheels_template: &wheels_job
+ stage: wheels
+ only:
+ - master
+ - tags
+ before_script:
+ - curl --silent https://gitlab.idiap.ch/bob/bob/snippets/8/raw | tr -d '\r' > upload-wheel.sh
+ - chmod 755 upload-wheel.sh
+ script:
+ - ./upload-wheel.sh
+
+
+# Template for (latest) documentation upload stage
+# Only one real job needs to do this
+.docs_template: &docs_job
+ stage: docs
+ only:
+ - master
+ before_script:
+ - curl --silent https://gitlab.idiap.ch/bob/bob/snippets/9/raw | tr -d '\r' > upload-sphinx.sh
+ - chmod 755 upload-sphinx.sh
+ script:
+ - ./upload-sphinx.sh
+
+
+# 2) Package specific instructions (you may tune this if needed)
+# --------------------------------------------------------------
+
+# Linux + Python 2.7: Builds, tests, uploads wheel
+build_linux_27:
+ <<: *linux_build_job
+ variables: &linux_27_build_variables
+ <<: *linux_build_variables
+ PYTHON_VER: "2.7"
+ WHEEL_TAG: "py27"
+ tags:
+ - conda-linux
+
+test_linux_27:
+ <<: *test_job
+ variables: *linux_27_build_variables
+ dependencies:
+ - build_linux_27
+ tags:
+ - conda-linux
+
+wheels_linux_27:
+ <<: *wheels_job
+ dependencies:
+ - build_linux_27
+ tags:
+ - conda-linux
+
+
+# Linux + Python 3.4: Builds and tests
+build_linux_34:
+ <<: *linux_build_job
+ variables: &linux_34_build_variables
+ <<: *linux_build_variables
+ PYTHON_VER: "3.4"
+ WHEEL_TAG: "py3"
+ tags:
+ - conda-linux
+
+test_linux_34:
+ <<: *test_job
+ variables: *linux_34_build_variables
+ dependencies:
+ - build_linux_34
+ tags:
+ - conda-linux
+
+
+# Linux + Python 3.5: Builds, tests, uploads wheel
+build_linux_35:
+ <<: *linux_build_job
+ variables: &linux_35_build_variables
+ <<: *linux_build_variables
+ PYTHON_VER: "3.5"
+ WHEEL_TAG: "py3"
+ tags:
+ - conda-linux
+
+test_linux_35:
+ <<: *test_job
+ variables: *linux_35_build_variables
+ dependencies:
+ - build_linux_35
+ tags:
+ - conda-linux
+
+wheels_linux_35:
+ <<: *wheels_job
+ dependencies:
+ - build_linux_35
+ tags:
+ - conda-linux
+
+docs_linux_35:
+ <<: *docs_job
+ dependencies:
+ - build_linux_35
+ tags:
+ - conda-linux
+
+
+# Mac OSX + Python 2.7: Builds and tests
+build_macosx_27:
+ <<: *macosx_build_job
+ variables: &macosx_27_build_variables
+ <<: *macosx_build_variables
+ PYTHON_VER: "2.7"
+ WHEEL_TAG: "py27"
+ tags:
+ - conda-macosx
+
+test_macosx_27:
+ <<: *test_job
+ variables: *macosx_27_build_variables
+ dependencies:
+ - build_macosx_27
+ tags:
+ - conda-macosx
+
+
+# Mac OSX + Python 3.4: Builds and tests
+build_macosx_34:
+ <<: *macosx_build_job
+ variables: &macosx_34_build_variables
+ <<: *macosx_build_variables
+ PYTHON_VER: "3.4"
+ WHEEL_TAG: "py3"
+ tags:
+ - conda-macosx
+
+test_macosx_34:
+ <<: *test_job
+ variables: *macosx_34_build_variables
+ dependencies:
+ - build_macosx_34
+ tags:
+ - conda-macosx
+
+
+# Mac OSX + Python 3.5: Builds and tests
+build_macosx_35:
+ <<: *macosx_build_job
+ variables: &macosx_35_build_variables
+ <<: *macosx_build_variables
+ PYTHON_VER: "3.5"
+ WHEEL_TAG: "py3"
+ tags:
+ - conda-macosx
+
+test_macosx_35:
+ <<: *test_job
+ variables: *macosx_35_build_variables
+ dependencies:
+ - build_macosx_35
+ tags:
+ - conda-macosx
\ No newline at end of file
diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 0cda4dc..0000000
--- a/.travis.yml
+++ /dev/null
@@ -1,40 +0,0 @@
-language: python
-matrix:
- include:
- - python: 2.7
- env:
- - secure: 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
- - secure: 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
- - BOB_DOCUMENTATION_SERVER=https://www.idiap.ch/software/bob/docs/latest/bioidiap/%s/master
- - BOB_UPLOAD_WHEEL="--python-tag py2"
-virtualenv:
- system_site_packages: true
-before_install:
-- sudo add-apt-repository -y ppa:biometrics/bob
-- sudo apt-get update -qq
-- sudo apt-get install -qq --force-yes libjpeg8-dev libnetpbm10-dev libpng12-dev libtiff4-dev libgif-dev libboost-all-dev libblitz1-dev libhdf5-serial-dev libvl-dev
-- sudo apt-get install -qq --force-yes dvipng texlive-latex-base texlive-latex-extra texlive-math-extra texlive-latex-recommended texlive-fonts-recommended
-- sudo apt-get install -qq --force-yes libatlas-dev libatlas-base-dev liblapack-dev gfortran
-- sudo apt-get install -qq --force-yes python-opencv libcv-dev libcvaux-dev libopencv-dev
-- sudo apt-get install -qq --force-yes python-numpy python-scipy python-matplotlib
-- pip install --find-links https://www.idiap.ch/software/bob/wheels/travis/ --use-wheel sphinx nose numpy scipy matplotlib coverage
-- pip install --find-links https://www.idiap.ch/software/bob/wheels/travis/ --use-wheel --pre -r requirements.txt coveralls
-install:
-- python bootstrap-buildout.py
-- ./bin/buildout buildout:debug=false -c buildout-before-patch.cfg
-- mkdir PythonFaceEvaluation
-- wget https://www.idiap.ch/software/bob/databases/latest/PythonFaceEvaluation.tar.bz2
-- tar -xjf PythonFaceEvaluation.tar.bz2 -C PythonFaceEvaluation
-- ./bin/patch_CSU.py PythonFaceEvaluation
-- ./bin/buildout buildout:develop="PythonFaceEvaluation ." buildout:extensions=bob.buildout buildout:auto-checkout= buildout:debug=false
-script:
-- ./bin/python -c 'import pkg_resources; from bob.bio.csu import get_config; print(get_config())'
-- ./bin/coverage run --source=bob.bio.csu ./bin/nosetests -vs
-- ./bin/sphinx-build -b doctest doc sphinx
-- ./bin/sphinx-build -b html doc sphinx
-after_success:
-- coveralls
-- wget https://raw.githubusercontent.com/bioidiap/bob.extension/master/scripts/upload-{sphinx,wheel}.sh
-- chmod a+x upload-sphinx.sh upload-wheel.sh
-- ./upload-sphinx.sh
-- ./upload-wheel.sh
diff --git a/COPYING b/COPYING
deleted file mode 100644
index 94a9ed0..0000000
--- a/COPYING
+++ /dev/null
@@ -1,674 +0,0 @@
- GNU GENERAL PUBLIC LICENSE
- Version 3, 29 June 2007
-
- Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
- Preamble
-
- The GNU General Public License is a free, copyleft license for
-software and other kinds of works.
-
- The licenses for most software and other practical works are designed
-to take away your freedom to share and change the works. By contrast,
-the GNU General Public License is intended to guarantee your freedom to
-share and change all versions of a program--to make sure it remains free
-software for all its users. We, the Free Software Foundation, use the
-GNU General Public License for most of our software; it applies also to
-any other work released this way by its authors. You can apply it to
-your programs, too.
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diff --git a/LICENSE b/LICENSE
new file mode 100644
index 0000000..6d938d8
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,27 @@
+Copyright (c) 2016 Idiap Research Institute, http://www.idiap.ch/
+Written by Amir Mohammadi <amir.mohammadi@idiap.ch>
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+this list of conditions and the following disclaimer in the documentation
+and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors
+may be used to endorse or promote products derived from this software without
+specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file
diff --git a/MANIFEST.in b/MANIFEST.in
index 2a5841d..56bcdb3 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1,4 +1,4 @@
-include README.rst bootstrap-buildout.py buildout.cfg buildout-before-patch.cfg LICENSE.txt version.txt requirements.txt
+include README.rst bootstrap-buildout.py buildout.cfg develop.cfg buildout-before-patch.cfg LICENSE.txt version.txt requirements.txt
recursive-include doc *.py *.rst
recursive-include bob/bio/csu/test/data *.hdf5
include patch/bob.bio.csu.patch
diff --git a/README.rst b/README.rst
index 7780132..b897620 100644
--- a/README.rst
+++ b/README.rst
@@ -1,40 +1,36 @@
.. vim: set fileencoding=utf-8 :
-.. Manuel Guenther <manuel.guenther@idiap.ch>
-.. Fri Sep 19 12:51:09 CEST 2014
+.. Fri 26 Aug 14:59:23 CEST 2016
.. image:: http://img.shields.io/badge/docs-stable-yellow.png
:target: http://pythonhosted.org/bob.bio.csu/index.html
.. image:: http://img.shields.io/badge/docs-latest-orange.png
- :target: https://www.idiap.ch/software/bob/docs/latest/bioidiap/bob.bio.csu/master/index.html
-.. image:: http://travis-ci.org/bioidiap/bob.bio.csu.svg?branch=master
- :target: https://travis-ci.org/bioidiap/bob.bio.csu?branch=master
-.. image:: https://coveralls.io/repos/bioidiap/bob.bio.csu/badge.png?branch=master
- :target: https://coveralls.io/r/bioidiap/bob.bio.csu?branch=master
-.. image:: https://img.shields.io/badge/github-master-0000c0.png
- :target: https://github.com/bioidiap/bob.bio.csu/tree/master
+ :target: https://www.idiap.ch/software/bob/docs/latest/bob/bob.bio.csu/master/index.html
+.. image:: https://gitlab.idiap.ch/bob/bob.bio.csu/badges/master/build.svg
+ :target: https://gitlab.idiap.ch/bob/bob.bio.csu/commits/master
+.. image:: https://img.shields.io/badge/gitlab-project-0000c0.svg
+ :target: https://gitlab.idiap.ch/bob/bob.bio.csu
.. image:: http://img.shields.io/pypi/v/bob.bio.csu.png
:target: https://pypi.python.org/pypi/bob.bio.csu
.. image:: http://img.shields.io/pypi/dm/bob.bio.csu.png
:target: https://pypi.python.org/pypi/bob.bio.csu
-.. image:: https://img.shields.io/badge/original-software-a000a0.png
- :target: http://www.cs.colostate.edu/facerec
-================================================================
+=========
bob.bio Wrapper classes for the CSU Face Recognition Resources
-================================================================
+=========
-This package is part of the ``bob.bio`` packages, which allow to run comparable and reproducible biometric recognition experiments on publicly available databases.
-
-This package provides wrapper classes for the CSU face recognition resources, which can be downloaded from http://www.cs.colostate.edu/facerec.
+This package is part of the signal-processing and machine learning toolbox
+Bob_. This package provides wrapper classes for the CSU face recognition resources, which can be downloaded from http://www.cs.colostate.edu/facerec.
Two algorithms are provided by the CSU toolkit (and also by this package): the local region PCA (LRPCA) and the LDA-IR (also known as CohortLDA).
For more information about the LRPCA and the LDA-IR algorithm, please refer to the documentation on http://www.cs.colostate.edu/facerec.
For further information about ``bob.bio``, please read `its Documentation <http://pythonhosted.org/bob.bio.base/index.html>`_.
-Installation Instructions
--------------------------
+Installation
+------------
+
+Follow our `installation`_ instructions first.
The current package is just a set of wrapper classes for the CSU facerec2010 module, which is contained in the `CSU Face Recognition Resources <http://www.cs.colostate.edu/facerec>`_, where you need to download the Baseline 2011 Algorithms.
Please make sure that you have read installation instructions in the Documentation_ of this package on how to patch the original source code to work with our algorithms, before you try to go on woth this package.
@@ -43,17 +39,18 @@ Please make sure that you have read installation instructions in the Documentati
Since the original CSU resources are not Python3 compatible, this package only supports Python2.
For external dependencies of the CSU resources, please read their `README <http://www.cs.colostate.edu/facerec/algorithms/README.pdf>`__.
-The ``bob.bio`` packages and parts of this package rely on Bob_, an open-source signal-processing and machine learning toolbox.
-For Bob_ to be able to work properly, some dependent packages are required to be installed.
-Please make sure that you have read the `Dependencies <https://github.com/idiap/bob/wiki/Dependencies>`_ for your operating system.
-Documentation
--------------
-For further documentation on this package, please read the `Stable Version <http://pythonhosted.org/bob.bio.csu/index.html>`_ or the `Latest Version <https://www.idiap.ch/software/bob/docs/latest/bioidiap/bob.bio.csu/master/index.html>`_ of the documentation.
-For a list of tutorials on packages ob Bob_, or information on submitting issues, asking questions and starting discussions, please visit its website.
+Contact
+-------
+
+For questions or reporting issues to this software package, contact our
+development `mailing list`_.
+.. Place your references here:
.. _bob: https://www.idiap.ch/software/bob
+.. _installation: https://gitlab.idiap.ch/bob/bob/wikis/Installation
+.. _mailing list: https://groups.google.com/forum/?fromgroups#!forum/bob-devel
.. _documentation: http://pythonhosted.org/bob.bio.csu/index.html
diff --git a/bob/bio/csu/algorithm/LDAIR.py b/bob/bio/csu/algorithm/LDAIR.py
index 276ad71..9d4d62e 100644
--- a/bob/bio/csu/algorithm/LDAIR.py
+++ b/bob/bio/csu/algorithm/LDAIR.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Oct 29 09:27:59 CET 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import facerec2010
import bob.bio.base
diff --git a/bob/bio/csu/algorithm/LRPCA.py b/bob/bio/csu/algorithm/LRPCA.py
index 110b5cb..b7f5d81 100644
--- a/bob/bio/csu/algorithm/LRPCA.py
+++ b/bob/bio/csu/algorithm/LRPCA.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Oct 29 09:27:59 CET 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import facerec2010
import bob.bio.base
diff --git a/bob/bio/csu/extractor/LDAIR.py b/bob/bio/csu/extractor/LDAIR.py
index c2898d8..4662cef 100644
--- a/bob/bio/csu/extractor/LDAIR.py
+++ b/bob/bio/csu/extractor/LDAIR.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Oct 29 09:27:59 CET 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import facerec2010
import pyvision
diff --git a/bob/bio/csu/extractor/LRPCA.py b/bob/bio/csu/extractor/LRPCA.py
index 1038590..7c1d917 100644
--- a/bob/bio/csu/extractor/LRPCA.py
+++ b/bob/bio/csu/extractor/LRPCA.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Oct 29 09:27:59 CET 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import facerec2010
import pyvision
diff --git a/bob/bio/csu/preprocessor/LDAIR.py b/bob/bio/csu/preprocessor/LDAIR.py
index fec7729..11631fb 100644
--- a/bob/bio/csu/preprocessor/LDAIR.py
+++ b/bob/bio/csu/preprocessor/LDAIR.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Oct 29 09:27:59 CET 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import facerec2010
import pyvision
diff --git a/bob/bio/csu/preprocessor/LRPCA.py b/bob/bio/csu/preprocessor/LRPCA.py
index 3f7e6e4..f4f69dc 100644
--- a/bob/bio/csu/preprocessor/LRPCA.py
+++ b/bob/bio/csu/preprocessor/LRPCA.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Oct 29 09:27:59 CET 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import facerec2010
import pyvision
diff --git a/bob/bio/csu/test/test_algorithms.py b/bob/bio/csu/test/test_algorithms.py
index 5b4f358..bf75854 100644
--- a/bob/bio/csu/test/test_algorithms.py
+++ b/bob/bio/csu/test/test_algorithms.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Oct 29 10:12:23 CET 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import os
diff --git a/bob/bio/csu/test/test_extractors.py b/bob/bio/csu/test/test_extractors.py
index c422e4d..8a6cc53 100644
--- a/bob/bio/csu/test/test_extractors.py
+++ b/bob/bio/csu/test/test_extractors.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Thu May 24 10:41:42 CEST 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import os
diff --git a/bob/bio/csu/test/test_preprocessors.py b/bob/bio/csu/test/test_preprocessors.py
index fb80c93..f13d753 100644
--- a/bob/bio/csu/test/test_preprocessors.py
+++ b/bob/bio/csu/test/test_preprocessors.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Thu May 24 10:41:42 CEST 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import unittest
diff --git a/bob/bio/csu/utils/__init__.py b/bob/bio/csu/utils/__init__.py
index f69c224..8a28854 100644
--- a/bob/bio/csu/utils/__init__.py
+++ b/bob/bio/csu/utils/__init__.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Oct 29 09:27:59 CET 2012
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import pickle
import bob.io.base
diff --git a/bootstrap-buildout.py b/bootstrap-buildout.py
index a629566..a459921 100644
--- a/bootstrap-buildout.py
+++ b/bootstrap-buildout.py
@@ -25,7 +25,10 @@ import tempfile
from optparse import OptionParser
-tmpeggs = tempfile.mkdtemp()
+__version__ = '2015-07-01'
+# See zc.buildout's changelog if this version is up to date.
+
+tmpeggs = tempfile.mkdtemp(prefix='bootstrap-')
usage = '''\
[DESIRED PYTHON FOR BUILDOUT] bootstrap.py [options]
@@ -40,8 +43,9 @@ this script from going over the network.
'''
parser = OptionParser(usage=usage)
-parser.add_option("-v", "--version", help="use a specific zc.buildout version")
-
+parser.add_option("--version",
+ action="store_true", default=False,
+ help=("Return bootstrap.py version."))
parser.add_option("-t", "--accept-buildout-test-releases",
dest='accept_buildout_test_releases',
action="store_true", default=False,
@@ -59,25 +63,33 @@ parser.add_option("-f", "--find-links",
parser.add_option("--allow-site-packages",
action="store_true", default=False,
help=("Let bootstrap.py use existing site packages"))
+parser.add_option("--buildout-version",
+ help="Use a specific zc.buildout version")
parser.add_option("--setuptools-version",
- help="use a specific setuptools version")
-
+ help="Use a specific setuptools version")
+parser.add_option("--setuptools-to-dir",
+ help=("Allow for re-use of existing directory of "
+ "setuptools versions"))
options, args = parser.parse_args()
+if options.version:
+ print("bootstrap.py version %s" % __version__)
+ sys.exit(0)
+
######################################################################
# load/install setuptools
try:
- if options.allow_site_packages:
- import setuptools
- import pkg_resources
from urllib.request import urlopen
except ImportError:
from urllib2 import urlopen
ez = {}
-exec(urlopen('https://bootstrap.pypa.io/ez_setup.py').read(), ez)
+if os.path.exists('ez_setup.py'):
+ exec(open('ez_setup.py').read(), ez)
+else:
+ exec(urlopen('https://bootstrap.pypa.io/ez_setup.py').read(), ez)
if not options.allow_site_packages:
# ez_setup imports site, which adds site packages
@@ -88,12 +100,19 @@ if not options.allow_site_packages:
# We can't remove these reliably
if hasattr(site, 'getsitepackages'):
for sitepackage_path in site.getsitepackages():
- sys.path[:] = [x for x in sys.path if sitepackage_path not in x]
+ # Strip all site-packages directories from sys.path that
+ # are not sys.prefix; this is because on Windows
+ # sys.prefix is a site-package directory.
+ if sitepackage_path != sys.prefix:
+ sys.path[:] = [x for x in sys.path
+ if sitepackage_path not in x]
setup_args = dict(to_dir=tmpeggs, download_delay=0)
if options.setuptools_version is not None:
setup_args['version'] = options.setuptools_version
+if options.setuptools_to_dir is not None:
+ setup_args['to_dir'] = options.setuptools_to_dir
ez['use_setuptools'](**setup_args)
import setuptools
@@ -110,7 +129,12 @@ for path in sys.path:
ws = pkg_resources.working_set
+setuptools_path = ws.find(
+ pkg_resources.Requirement.parse('setuptools')).location
+
+# Fix sys.path here as easy_install.pth added before PYTHONPATH
cmd = [sys.executable, '-c',
+ 'import sys; sys.path[0:0] = [%r]; ' % setuptools_path +
'from setuptools.command.easy_install import main; main()',
'-mZqNxd', tmpeggs]
@@ -123,11 +147,8 @@ find_links = os.environ.get(
if find_links:
cmd.extend(['-f', find_links])
-setuptools_path = ws.find(
- pkg_resources.Requirement.parse('setuptools')).location
-
requirement = 'zc.buildout'
-version = options.version
+version = options.buildout_version
if version is None and not options.accept_buildout_test_releases:
# Figure out the most recent final version of zc.buildout.
import setuptools.package_index
@@ -167,7 +188,7 @@ if version:
cmd.append(requirement)
import subprocess
-if subprocess.call(cmd, env=dict(os.environ, PYTHONPATH=setuptools_path)) != 0:
+if subprocess.call(cmd) != 0:
raise Exception(
"Failed to execute command:\n%s" % repr(cmd)[1:-1])
diff --git a/buildout.cfg b/buildout.cfg
index b16ffda..7a1314a 100644
--- a/buildout.cfg
+++ b/buildout.cfg
@@ -1,80 +1,14 @@
; vim: set fileencoding=utf-8 :
-; author: Manuel Guenther <manuel.guenther@idiap.ch>
-; date: Wed Feb 13 12:35:29 CET 2013
+; Fri 26 Aug 14:57:21 CEST 2016
[buildout]
parts = scripts
-
-; required packages: the facereclib, the original code and our wrapper package
-eggs = bob.bio.base
- bob.bio.face
- PythonFaceEvaluation
- bob.bio.csu
-
+develop = .
+eggs = bob.bio.csu
extensions = bob.buildout
- mr.developer
-auto-checkout = *
-develop = src/bob.extension
- src/bob.blitz
- src/bob.core
- src/bob.io.base
- src/bob.io.image
- src/bob.learn.activation
- src/bob.math
- src/bob.learn.linear
- src/bob.sp
- src/bob.ip.base
- src/bob.ip.color
- src/bob.ip.draw
- src/bob.ip.gabor
- src/bob.learn.em
- src/bob.measure
- src/bob.db.base
- src/bob.db.verification.utils
- src/bob.db.verification.filelist
- src/bob.db.atnt
- src/bob.bio.base
- src/bob.learn.boosting
- src/bob.ip.facedetect
- src/bob.ip.flandmark
- src/bob.bio.face
- ${buildout:csu-dir}
- .
-
-csu-dir = [PATH_TO_YOUR_CSU_COPY]
-
-; options for bob.buildout extension
-debug = false
-verbose = true
newest = false
-
-[sources]
-bob.extension = git https://github.com/bioidiap/bob.extension
-bob.blitz = git https://github.com/bioidiap/bob.blitz
-bob.core = git https://github.com/bioidiap/bob.core
-bob.io.base = git https://github.com/bioidiap/bob.io.base
-bob.io.image = git https://github.com/bioidiap/bob.io.image
-bob.learn.activation = git https://github.com/bioidiap/bob.learn.activation
-bob.math = git https://github.com/bioidiap/bob.math
-bob.sp = git https://github.com/bioidiap/bob.sp
-bob.ip.base = git https://github.com/bioidiap/bob.ip.base
-bob.ip.color = git https://github.com/bioidiap/bob.ip.color
-bob.ip.draw = git https://github.com/bioidiap/bob.ip.draw
-bob.ip.gabor = git https://github.com/bioidiap/bob.ip.gabor
-bob.learn.linear = git https://github.com/bioidiap/bob.learn.linear
-bob.learn.em = git https://github.com/bioidiap/bob.learn.em
-bob.measure = git https://github.com/bioidiap/bob.measure
-bob.db.base = git https://github.com/bioidiap/bob.db.base
-bob.db.verification.utils = git https://github.com/bioidiap/bob.db.verification.utils
-bob.db.verification.filelist = git https://github.com/bioidiap/bob.db.verification.filelist
-bob.db.atnt = git https://github.com/bioidiap/bob.db.atnt
-bob.bio.base = git https://github.com/bioidiap/bob.bio.base
-bob.learn.boosting = git https://github.com/bioidiap/bob.learn.boosting
-bob.ip.facedetect = git https://github.com/bioidiap/bob.ip.facedetect
-bob.ip.flandmark = git https://github.com/bioidiap/bob.ip.flandmark
-bob.bio.face = git https://github.com/bioidiap/bob.bio.face
+verbose = true
[scripts]
recipe = bob.buildout:scripts
-; enable if you want to have the bob scripts installed
-dependent-scripts = true
+dependent-scripts = true
\ No newline at end of file
diff --git a/develop.cfg b/develop.cfg
new file mode 100644
index 0000000..db83cd4
--- /dev/null
+++ b/develop.cfg
@@ -0,0 +1,80 @@
+; vim: set fileencoding=utf-8 :
+; author: Manuel Guenther <manuel.guenther@idiap.ch>
+; date: Wed Feb 13 12:35:29 CET 2013
+
+[buildout]
+parts = scripts
+
+; required packages: the facereclib, the original code and our wrapper package
+eggs = bob.bio.base
+ bob.bio.face
+ PythonFaceEvaluation
+ bob.bio.csu
+
+extensions = bob.buildout
+ mr.developer
+auto-checkout = *
+develop = src/bob.extension
+ src/bob.blitz
+ src/bob.core
+ src/bob.io.base
+ src/bob.io.image
+ src/bob.learn.activation
+ src/bob.math
+ src/bob.learn.linear
+ src/bob.sp
+ src/bob.ip.base
+ src/bob.ip.color
+ src/bob.ip.draw
+ src/bob.ip.gabor
+ src/bob.learn.em
+ src/bob.measure
+ src/bob.db.base
+ src/bob.db.verification.utils
+ src/bob.db.verification.filelist
+ src/bob.db.atnt
+ src/bob.bio.base
+ src/bob.learn.boosting
+ src/bob.ip.facedetect
+ src/bob.ip.flandmark
+ src/bob.bio.face
+ ${buildout:csu-dir}
+ .
+
+csu-dir = [PATH_TO_YOUR_CSU_COPY]
+
+; options for bob.buildout extension
+debug = false
+verbose = true
+newest = false
+
+[sources]
+bob.extension = git https://gitlab.idiap.ch/bob/bob.extension
+bob.blitz = git https://gitlab.idiap.ch/bob/bob.blitz
+bob.core = git https://gitlab.idiap.ch/bob/bob.core
+bob.io.base = git https://gitlab.idiap.ch/bob/bob.io.base
+bob.io.image = git https://gitlab.idiap.ch/bob/bob.io.image
+bob.learn.activation = git https://gitlab.idiap.ch/bob/bob.learn.activation
+bob.math = git https://gitlab.idiap.ch/bob/bob.math
+bob.sp = git https://gitlab.idiap.ch/bob/bob.sp
+bob.ip.base = git https://gitlab.idiap.ch/bob/bob.ip.base
+bob.ip.color = git https://gitlab.idiap.ch/bob/bob.ip.color
+bob.ip.draw = git https://gitlab.idiap.ch/bob/bob.ip.draw
+bob.ip.gabor = git https://gitlab.idiap.ch/bob/bob.ip.gabor
+bob.learn.linear = git https://gitlab.idiap.ch/bob/bob.learn.linear
+bob.learn.em = git https://gitlab.idiap.ch/bob/bob.learn.em
+bob.measure = git https://gitlab.idiap.ch/bob/bob.measure
+bob.db.base = git https://gitlab.idiap.ch/bob/bob.db.base
+bob.db.verification.utils = git https://gitlab.idiap.ch/bob/bob.db.verification.utils
+bob.db.verification.filelist = git https://gitlab.idiap.ch/bob/bob.db.verification.filelist
+bob.db.atnt = git https://gitlab.idiap.ch/bob/bob.db.atnt
+bob.bio.base = git https://gitlab.idiap.ch/bob/bob.bio.base
+bob.learn.boosting = git https://gitlab.idiap.ch/bob/bob.learn.boosting
+bob.ip.facedetect = git https://gitlab.idiap.ch/bob/bob.ip.facedetect
+bob.ip.flandmark = git https://gitlab.idiap.ch/bob/bob.ip.flandmark
+bob.bio.face = git https://gitlab.idiap.ch/bob/bob.bio.face
+
+[scripts]
+recipe = bob.buildout:scripts
+; enable if you want to have the bob scripts installed
+dependent-scripts = true
diff --git a/doc/conf.py b/doc/conf.py
index a40135e..3218d19 100644
--- a/doc/conf.py
+++ b/doc/conf.py
@@ -1,9 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# Andre Anjos <andre.anjos@idiap.ch>
-# Mon 13 Aug 2012 12:38:15 CEST
-#
-# Copyright (C) 2011-2014 Idiap Research Institute, Martigny, Switzerland
import os
import sys
@@ -11,37 +7,41 @@ import glob
import pkg_resources
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#sys.path.insert(0, os.path.abspath('.'))
-
# -- General configuration -----------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
-#needs_sphinx = '1.0'
+needs_sphinx = '1.3'
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
- 'sphinx.ext.todo',
- 'sphinx.ext.coverage',
- 'sphinx.ext.pngmath',
- 'sphinx.ext.ifconfig',
- 'sphinx.ext.autodoc',
- 'sphinx.ext.autosummary',
- 'sphinx.ext.doctest',
- 'sphinx.ext.intersphinx',
- ]
+ 'sphinx.ext.todo',
+ 'sphinx.ext.coverage',
+ 'sphinx.ext.ifconfig',
+ 'sphinx.ext.autodoc',
+ 'sphinx.ext.autosummary',
+ 'sphinx.ext.doctest',
+ 'sphinx.ext.graphviz',
+ 'sphinx.ext.intersphinx',
+ 'sphinx.ext.napoleon',
+ 'sphinx.ext.viewcode',
+ ]
-# The viewcode extension appeared only on Sphinx >= 1.0.0
import sphinx
-if sphinx.__version__ >= "1.0":
- extensions.append('sphinx.ext.viewcode')
+if sphinx.__version__ >= "1.4.1":
+ extensions.append('sphinx.ext.imgmath')
+else:
+ extensions.append('sphinx.ext.pngmath')
# Always includes todos
todo_include_todos = True
+# Generates auto-summary automatically
+autosummary_generate = True
+
+# Create numbers on figures with captions
+numfig = True
+
# If we are on OSX, the 'dvipng' path maybe different
dvipng_osx = '/opt/local/libexec/texlive/binaries/dvipng'
if os.path.exists(dvipng_osx): pngmath_dvipng = dvipng_osx
@@ -59,13 +59,17 @@ source_suffix = '.rst'
master_doc = 'index'
# General information about the project.
-project = u'Wrapper classes to use the CSU tools with bob.bio'
+project = u'bob.bio.csu'
import time
copyright = u'%s, Idiap Research Institute' % time.strftime('%Y')
# Grab the setup entry
-distribution = pkg_resources.require('bob.bio.csu')[0]
+distribution = pkg_resources.require(project)[0]
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
# The short X.Y version.
version = distribution.version
# The full version, including alpha/beta/rc tags.
@@ -105,13 +109,18 @@ pygments_style = 'sphinx'
# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []
+# Some variables which are useful for generated material
+project_variable = project.replace('.', '_')
+short_description = u'bob.bio Wrapper classes for the CSU Face Recognition Resources'
+owner = [u'Idiap Research Institute']
+
# -- Options for HTML output ---------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
-if sphinx.__version__ >= "1.0":
- html_theme = 'nature'
+import sphinx_rtd_theme
+html_theme = 'sphinx_rtd_theme'
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
@@ -119,14 +128,14 @@ if sphinx.__version__ >= "1.0":
#html_theme_options = {}
# Add any paths that contain custom themes here, relative to this directory.
-#html_theme_path = []
+html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
# The name for this set of Sphinx documents. If None, it defaults to
# "<project> v<release> documentation".
#html_title = None
# A shorter title for the navigation bar. Default is the same as html_title.
-#html_short_title = 'bob'
+#html_short_title = project_variable
# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
@@ -140,7 +149,7 @@ html_favicon = 'img/favicon.ico'
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
-# html_static_path = ['_static']
+#html_static_path = ['_static']
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
@@ -184,73 +193,48 @@ html_favicon = 'img/favicon.ico'
#html_file_suffix = None
# Output file base name for HTML help builder.
-htmlhelp_basename = 'bob_bio_csu_doc'
-
-
-# -- Options for LaTeX output --------------------------------------------------
-
-# The paper size ('letter' or 'a4').
-latex_paper_size = 'a4'
-
-# The font size ('10pt', '11pt' or '12pt').
-latex_font_size = '10pt'
+htmlhelp_basename = project_variable + u'_doc'
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title, author, documentclass [howto/manual]).
-latex_documents = [
- ('index', 'xfacereclib_extension_csu.tex', u'FaceRecLib Documentation',
- u'Biometrics Group, Idiap Research Institute', 'manual'),
-]
-# The name of an image file (relative to this directory) to place at the top of
-# the title page.
-latex_logo = ''
-
-# For "manual" documents, if this is true, then toplevel headings are parts,
-# not chapters.
-#latex_use_parts = False
-
-# If true, show page references after internal links.
-#latex_show_pagerefs = False
-
-# If true, show URL addresses after external links.
-#latex_show_urls = False
-
-# Additional stuff for the LaTeX preamble.
-#latex_preamble = ''
-
-# Documents to append as an appendix to all manuals.
-#latex_appendices = []
-
-# If false, no module index is generated.
-#latex_domain_indices = True
+# -- Post configuration --------------------------------------------------------
# Included after all input documents
-rst_epilog = ''
-
-# -- Options for manual page output --------------------------------------------
-
-# One entry per manual page. List of tuples
-# (source start file, name, description, authors, manual section).
-man_pages = [
- ('index', 'bob.bio.csu', u'Documentation', [u'Idiap Research Institute'], 1)
-]
+rst_epilog = """
+.. |project| replace:: Bob
+.. |version| replace:: %s
+.. |current-year| date:: %%Y
+""" % (version,)
# Default processing flags for sphinx
-autoclass_content = 'both'
+autoclass_content = 'class'
autodoc_member_order = 'bysource'
-autodoc_default_flags = ['members', 'undoc-members', 'inherited-members', 'show-inheritance']
+autodoc_default_flags = [
+ 'members',
+ 'undoc-members',
+ 'inherited-members',
+ 'show-inheritance',
+ ]
# For inter-documentation mapping:
from bob.extension.utils import link_documentation
intersphinx_mapping = link_documentation()
-
-def skip(app, what, name, obj, skip, options):
- # Do not skip the __call__ function as we have special implementations for them.
- if name in ("__call__"):
- return False
- return skip
+# We want to remove all private (i.e. _. or __.__) members
+# that are not in the list of accepted functions
+accepted_private_functions = ['__array__']
+
+def member_function_test(app, what, name, obj, skip, options):
+ # test if we have a private function
+ if len(name) > 1 and name[0] == '_':
+ # test if this private function should be allowed
+ if name not in accepted_private_functions:
+ # omit privat functions that are not in the list of accepted private functions
+ return skip
+ else:
+ # test if the method is documented
+ if not hasattr(obj, '__doc__') or not obj.__doc__:
+ return skip
+ return False
def setup(app):
- app.connect("autodoc-skip-member", skip)
+ app.connect('autodoc-skip-member', member_function_test)
\ No newline at end of file
diff --git a/doc/img/logo.png b/doc/img/logo.png
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diff --git a/patch/__init__.py b/patch/__init__.py
index 3ca0ab4..c69f4a8 100644
--- a/patch/__init__.py
+++ b/patch/__init__.py
@@ -1,21 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# @author: Manuel Guenther <Manuel.Guenther@idiap.ch>
-# @date: Mon Apr 15 18:44:13 CEST 2013
-#
-# Copyright (C) 2011-2012 Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
import sys
import os
diff --git a/setup.py b/setup.py
index b04b31c..c58d46d 100644
--- a/setup.py
+++ b/setup.py
@@ -1,37 +1,5 @@
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
-# Andre Anjos <andre.anjos@idiap.ch>
-# Mon 16 Apr 08:18:08 2012 CEST
-#
-# Copyright (C) Idiap Research Institute, Martigny, Switzerland
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, version 3 of the License.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-# This file contains the python (distutils/setuptools) instructions so your
-# package can be installed on **any** host system. It defines some basic
-# information like the package name for instance, or its homepage.
-#
-# It also defines which other packages this python package depends on and that
-# are required for this package's operation. The python subsystem will make
-# sure all dependent packages are installed or will install them for you upon
-# the installation of this package.
-#
-# The 'buildout' system we use here will go further and wrap this package in
-# such a way to create an isolated python working environment. Buildout will
-# make sure that dependencies which are not yet installed do get installed, but
-# **without** requiring administrative privileges on the host system. This
-# allows you to test your package with new python dependencies w/o requiring
-# administrative interventions.
from setuptools import setup, dist
dist.Distribution(dict(setup_requires = ['bob.extension']))
@@ -50,10 +18,10 @@ setup(
version = open("version.txt").read().rstrip(),
description = 'Wrapper classes to use the PythonFaceEvaluation classes from the CSU Face Recognition Resources',
- url = 'https://www.github.com/<YourInstitution>/<YourPackage>',
- license = 'GPLv3',
- author = '<YourName>',
- author_email = '<YourEmail>',
+ url = 'https://gitlab.idiap.ch/bob/bob.bio.csu',
+ license = 'BSD',
+ author = 'Amir Mohammadi',
+ author_email = 'amir.mohammadi@idiap.ch',
keywords = 'bob',
# If you have a better, long description of your package, place it on the
@@ -114,7 +82,7 @@ setup(
'Framework :: Bob',
'Development Status :: 3 - Alpha',
'Intended Audience :: Developers',
- 'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+ 'License :: OSI Approved :: BSD License',
'Natural Language :: English',
'Programming Language :: Python',
'Topic :: Scientific/Engineering :: Artificial Intelligence',
--
GitLab