- Breaking and significant changes
- Removed the old
- Functionality to load biometric scores are now in
- Added new scripts for plotting and evaluations. Refer to docs.
- Added a new baselines concept. Refer to docs.
- Detailed changes
- !147 Update installation instructions since conda's usage has changed.
- !148 Archive CSU: closes #109
!146 Add 4-5-col files related functionalities and add
click commands: In this merge: * Add loading functionalities from
bob.measure* Add the following click commands (as substitutes for old script evaluate.py) using 4- or 5 - scores input files: *
bob bio metrics*
bob bio roc*
bob bio det*
bob bio epc*
bob bio hist*
bob bio evaluate: calls all the above commands at once *
bob bio cmc*
bob bio dic*
bob bio genPlots follow ISO standards. The underlying implementation of the mentioned commands uses
bob.measurebase classes. Fixes #108
- !149 Set io-big flag for the demanding grid config: Closes bob.bio.base#110 Anyone cares to review this one? It's harmless.
- !143 Set of click commands for bio base: From #65 Provide commands in bio base: - bob bio metrics
- bob bio roc - bob bio evaluate (Very similar to evalute.py)
- !152 Removed unused import imp and solving #83: Closes #83
- !153 Added the protocol argument issue #111: Closes #111
- !154 Fixes in ROC and DET labels
- !157 Fixed bob bio dir x_labels and y_labels: The labels of the DIR plot were incorrect.
- !155 Write parameters in a temporary config file to enable chain loading: Fixes #116
- !150 Exposing the method groups in our FileDatabase API
- !158 Add prefix aliasing for Click commands
- !160 Titltes: Allows a list of titles Fixes #121. Requires bob.measure!67
- !159 Resolve "Documentation does not include a link to the recordings of the IJCB tutorial": Closes #122
- !161 Change --eval option default and Various fixes: fixes #112. Add and clean histo options. See bob.measure!67#note_30951 Requires bob.measure!68
- !163 Reduce repition between commands: Depends on bob.measure!70
- !162 Removed traces of evaluate.py in the documentation
- !164 Fix test according to changes in nbins option
- !165 Set names for different bio metrics: Bio specific names for metrics when using bob.measure Metrics
- !166 Add a command for multi protocol (N-fold cross validation) analysis: Similar to bob.measure!79
- !167 Various fixes: Requires bob.measure!82 Similar to bob.measure!82 for bio commands
- !168 Documentation changes in bob bio annotate: Depends on bob.extension!86
- !156 Using the proper verify script depending on system: Closes #119
- !151 Created the Baselines Concept
- !169 Change assert to assert_click_runner_result
- Migrate to conda based CI
- Updated docs and tests
- Added allow_missing_files option and added tests
- Removed write_commands function in grid_search (closes #71)
- Added annotator, updated documentation accordingly
- Allow for comment lines in file-lists
- Improves verbosity for preprocessing, extraction and enrollment
- bob.db.base.Database is deprecated.
- Using config file loading mechanism from bob.extension
- Fix debug message (closes #103)
- Fixed the exception that is raised when score file is not found
- Mentions bob.bio.vein on bob.bio.base docs (closes #104)
- Added metadata in preprocessing, feature extraction, and algorithm
- Removed write_commands function in grid_search (closes #71)
- Improve replace directories
- Changed backend in
- Changed backend in
- !89 [ci] Fixed issue with matplotlib
- !95 Removed class client from FileListDatabase
- !94 Implemented the plots for the Detection Identification Rate (open-set identification)
- !93 Corrections in the documentation
!92 Documented the configuration file input for the
!90 Implemented a way to use, at the same time, 4 and 5 columns score file in the
- !88 Improved ROC and CMC plots
- !87 Fixed * ZT files are processed even when no ZT processing is wanted
- !81 Droped dependency on Latex
- !86 Implemented five-column score file -* only during concatenation
- !83 Improve suggestion on variable naming convention to match python's standard
Algorithm.read_probemethod, since this is already solved via
- !82 Add a function to read features with generators
- use super() in class constructors
- re-arranged command line options and more reusable code of command line
- a slightly updated documentation
- Updated code to pass original_directory and original_extension to
bob.db.base.Database, as now required
- Updated the mailing list and issues links
- Used SVG build badges
- Fixed PLDA test files (standarization of the SVD signal in
bob.math#10) (issue #61)
- Moved the code to do fileList datasets to
- Introduced a minimum file size for every element in the toolchain (merge #58)
- Fixed issue with the default resources (issue #53)
- Moved some functionality of
- The implementation
annotationsmethod now is mandatory in
- Fixed issue in the PLDA when it's a linear projection before the training is not set (issue #56)
- Fixed issue with the
verify.pyscript (issue #51)
- Fixed issue with the grid options offered by the
verify.pyscript (issue #46)
Outcome of the refactoring 2016 (new database interface).
103 commits in total
3eff0cef Increased latest version to 3.0.1b0 [skip ci]
43626a2c Increased stable version to 3.0.0
df87afe2 Merge branch 'patch-doc' into 'master'
4d17eb1a Introduce our mailing list for reporting issues
5d114973 Point to gitlab pages
aa5aec27 Merge branch 'patch-1' into 'master'
0c2eeb95 Make sure default value is not a pointer
a77c013b Made the default for --result-directory and --temp-directory more obvious that it is not the real path, see /scratch/mgunther/test_checkouts/bob.bio.caffe/caffe/bin/caffe 'train' --solver=solver.prototxt -log_dir '.' -snapshot 1e-4/snapshots_iter_50000.solverstate , fixes #43
a4e3bd85 Revert "Use the 'default' keyword on the argparse option"
7c8fc29b Merge branch 'revert-18-master' into 'master'
f4c7d6ca Merge branch 'pre-release' into 'master'
104407b3 Removed the superflouos original_data_list_files from the FileSelector and updated preprocessor accordingly
b88c4e60 Fixing sphinx warnings
5021ffe1 [ci] Update with new ci
7a7b01d3 Merge branch 'groups_vs_group' into 'master'
6f0753ff Merge branch '26-confusing-defaults-documentation-on-bob-bio-base-scripts' into 'master'
927f30ef Use the 'default' keyword on the argparse option
6bd84ca7 Updated documentation of --temp-directory and --result-directory to be less confusing
e8315bee Merge branch 'issue-8-remove-database-configuration' into 'master'
8190e864 Merge branch 'issue-8-remove-database-configuration' into 'master'
e7722c0c Merge branch 'issue-8-remove-database-configuration' of gitlab.idiap.ch:bob/bob.bio.base into issue-8-remove-database-configuration
0df3423e [refactoring2016] Moved from bob.bio.db to bob.bio.base the scripts that test the hight level implementations
4a1731f6 Turned lambda function into named function
554419d6 Merge branch 'issue-8-remove-database-configuration' into 'master'
fafbda49 Merge branch 'issue-8-remove-database-configuration' of gitlab.idiap.ch:bob/bob.bio.base into issue-8-remove-database-configuration
0ef1c256 [refactoring2016] Moved bob.bio.db.BioDatabase to bob.bio.base
ed0617d8 [refactoring2016] Merged 29-preprocessor-does-not-use-the-load-method-of-the-biofile-class with issue-8-remove-database-configuration
f8a50678 [refactoring2016] Updated the annotations function
3030866d [refactoring2016] Updated documentation and buildout
67916c31 [refactoring2016] Moved bob.bio.db.BioDatabase to bob.bio.base
3d6d2148 Using derived class BioFile.load functions as default for read_original_data
fdd1a334 Updated name of load_function to be read_original_data (to be consistent with the name of the function); used BioFile.load instead of bob.db.base.File.load as default.
04ff36c2 Updated dummy databases to work with bob.db.atnt directly and return BioFile or BioFileSet objects
1d88685f First version of proposed handling of original data
10f2493c Revert "use the File.load method if possible."
753d3f93 Revert "Fix for bob.bio.video"
28a640f6 Merge branch 'config_file' into 'master'
453519ea Turned recursion over config's into an iteration
630867cc [resources] Avoid exec() as it has bugs on Python 2.7
9eb1e90c Fix use of read_config_file() at other points
74e20601 [develop.cfg] Add bob.io.image for dev
a0022914 [config_file] Implement multi-config readout
451ca636 Merge branch 'issue-8-remove-database-configuration' of gitlab.idiap.ch:bob/bob.bio.base into issue-8-remove-database-configuration
432b2302 [refactoring2016] Updated the annotations function
ce5b6498 [refactoring2016] Updated documentation and buildout
104010ae [refactoring2016] Moved bob.bio.db.BioDatabase to bob.bio.base
b26bf656 [refactoring2016] Merged 29-preprocessor-does-not-use-the-load-method-of-the-biofile-class with issue-8-remove-database-configuration
9bc7a152 Use string mode to open tempfile for py3 compat
9f5f7e6d Better fix w/o leaving something untested
25b5d50f Fix py3 compatibility issue
8c3b1190 Fixes and tests for the config-file feature
988a7ca3 Make import relative
de870e6c Fix argument parsing destination
ffcb9385 Add more cmdline options
43a4efcb Introduced the --configuration-file command line option
94864906 [refactoring2016] Updated the annotations function
6b55fda6 [refactoring2016] Updated documentation and buildout
7d29b773 [refactoring2016] Moved bob.bio.db.BioDatabase to bob.bio.base
457b89f6 [config_file] Make it an optional argument rather than an option
4f3c96b9 Merge branch 'config_file' into 'master'
bd1a8af8 Use string mode to open tempfile for py3 compat
bfd4ae32 Better fix w/o leaving something untested
3ed8d9bb Fix py3 compatibility issue
cc3e85e6 Using derived class BioFile.load functions as default for read_original_data
14e685d2 Fixes and tests for the config-file feature
16fc352c Make import relative
63d3b73e Updated name of load_function to be read_original_data (to be consistent with the name of the function); used BioFile.load instead of bob.db.base.File.load as default.
4373e7e0 Updated dummy databases to work with bob.db.atnt directly and return BioFile or BioFileSet objects
a7a9a0d3 First version of proposed handling of original data
d69bcf71 Revert "use the File.load method if possible."
ed59a2f8 Revert "Fix for bob.bio.video"
35b38820 Updated test for new score.py script
eee28aa7 Fixed score.py script to use projector in the right way
347bf423 Merge branch '10-create-a-test-to-prevent-some-errors-for-scoring-tools' into 'master'
9351e02a Fix develop.cfg
567d530b Add a test when the algorithm does not do projection
17c7af71 Fix argument parsing destination
bb814339 Add more cmdline options
7c3e4856 Merge branch 'master' into config_file
24bda38f update filesets dummy database
521a44a7 Fix the dummy database
098de3fe Merge branch 'master' into config_file
a84d12d9 Merge branch 'fixed_tests' into 'master'
cf12e92a fix failing tests
b55ecdb9 fix documentation
36b4b243 Fix for bob.bio.video
8203fdf9 [manifest] Ship test requirements with package
bf64ff8f [test] Add requirement to gridtk for testing
6c833675 [many] Remove license headers
175cf005 [preproc] Change dep bob.db.verification.utils -> bob.db.base
108c4f38 refactoring_2016 is now merged.
5aa6664e drop DatabaseBob
11a7e229 use the File.load method if possible.
7c95bb72 Replaced eval() with more appropriate setattr() in resources
96a16667 Introduced the --configuration-file command line option
b9c8beb4 Increased latest version to 2.0.11b0 [skip ci]
e990d550 Revert "Fixed a bug when there is no argument called env"