Organized the --sub-directory option and automatically deleted the temp file

Put the temp files back

Organized the --sub-directories for the baselines
4 jobs for chain in 24 minutes (queued for 2 seconds)
Status Name Job ID Coverage
  Build
passed build_linux_27 #137423
docker

00:09:18

89.0%
passed build_linux_36 #137424
docker

00:09:55

89.0%
passed build_macosx_27 #137425
macosx

00:16:12

89.0%
passed build_macosx_36 #137426
macosx

00:16:02

89.0%