bob.bio.base merge requestshttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests2018-03-10T09:25:15Zhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/135Make missing annotations None instead of empty dict2018-03-10T09:25:15ZAmir MOHAMMADIMake missing annotations None instead of empty dicthttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/134Changed the paths to images2018-02-22T10:37:58ZOlegs NIKISINSChanged the paths to imagesFixes docs#1Fixes docs#1Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/133Mentions bob.bio.vein on bob.bio.base docs (closes #104)2018-02-21T13:23:58ZAndré AnjosMentions bob.bio.vein on bob.bio.base docs (closes #104)Conda-based CIAndré AnjosAndré Anjoshttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/132Add missing test dependencies2018-02-09T15:50:16ZAmir MOHAMMADIAdd missing test dependenciesConda-based CIAmir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/131Add annotator support2018-03-09T14:54:04ZAmir MOHAMMADIAdd annotator supportAlso adds a ``bob bio ...`` root command.
Depends on bob.extension!67Also adds a ``bob bio ...`` root command.
Depends on bob.extension!67Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/128Migrate to conda based CI2018-02-05T16:07:31ZAmir MOHAMMADIMigrate to conda based CIConda-based CIhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/127Use super in base file classes2018-01-10T18:44:43ZAmir MOHAMMADIUse super in base file classescross ref: https://gitlab.idiap.ch/bob/bob.db.base/merge_requests/36cross ref: https://gitlab.idiap.ch/bob/bob.db.base/merge_requests/36Manuel Günthersiebenkopf@googlemail.comManuel Günthersiebenkopf@googlemail.comhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/125Included metadata during the feature extraction.2018-03-01T07:08:08ZTiago de Freitas PereiraIncluded metadata during the feature extraction.Hi guys,
I have a feature extractor that needs to use some meta information that is stored in `bob.bio.base.database.BioFile`.
In this MR, I added in the preprocessor.__call__ and extractor.__call__ a keyword called metadata that w...Hi guys,
I have a feature extractor that needs to use some meta information that is stored in `bob.bio.base.database.BioFile`.
In this MR, I added in the preprocessor.__call__ and extractor.__call__ a keyword called metadata that will ship an instance of `bob.bio.base.database.BioFile`.
Some design decisions, that will may generate discussion, are commented in the MR diff. Please have a look there.
Extending this to other elements in the toolchain (enrolling, scoring), could provide a solution to !111.
@mguenther, do you have some time to review this one?
Thanks in advance.Tiago de Freitas PereiraTiago de Freitas Pereirahttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/124Fixed the exception that is raised when score file is not found2018-01-03T08:52:07ZManuel Günthersiebenkopf@googlemail.comFixed the exception that is raised when score file is not foundTiago de Freitas PereiraTiago de Freitas Pereirahttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/123Fix debug message (closes #103)2017-12-22T18:59:55ZAndré AnjosFix debug message (closes #103)Manuel Günthersiebenkopf@googlemail.comManuel Günthersiebenkopf@googlemail.comhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/121chain loading: following not preceding config file2017-12-05T11:00:49ZAmir MOHAMMADIchain loading: following not preceding config fileTiago de Freitas PereiraTiago de Freitas Pereirahttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/120Enabled the assignment of the variable env via config files2017-12-04T15:12:30ZTiago de Freitas PereiraEnabled the assignment of the variable env via config filesThis feature is just an extension of an existent feature.
Today the only way to send environment variables to SGE via `bob.bio.base` is setting the optional argument `--environment`.
This MR allows us to set that via configuration files ...This feature is just an extension of an existent feature.
Today the only way to send environment variables to SGE via `bob.bio.base` is setting the optional argument `--environment`.
This MR allows us to set that via configuration files by adding `env=MY_VAR=VALUE`.
Before any complains, I can't come up with test case for that one.
This is injected directly in the Namespace object (argparse) AND this object is not visible when we I call verify.main().https://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/119Integrate the new bob.extension loading config mechanism2018-01-03T09:24:48ZTiago de Freitas PereiraIntegrate the new bob.extension loading config mechanismCan we have this feature integrated with bob.bio.base?
I've done some effort with this MR, but I haven't integrated with this https://gitlab.idiap.ch/bob/bob.extension/merge_requests/58Can we have this feature integrated with bob.bio.base?
I've done some effort with this MR, but I haven't integrated with this https://gitlab.idiap.ch/bob/bob.extension/merge_requests/58Amir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/118Do not use **kwargs for pretty printing in databases2017-12-04T17:06:33ZAmir MOHAMMADIDo not use **kwargs for pretty printing in databasesbob.db.base.Database is deprecated Use bob.db.base.FileDatabase insteadbob.db.base.Database is deprecated Use bob.db.base.FileDatabase insteadAmir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/117Improves verbosity for preprocessing, extraction and enrollment; Adds more…2017-11-17T16:49:45ZAndré AnjosImproves verbosity for preprocessing, extraction and enrollment; Adds more…Improves verbosity for preprocessing, extraction and enrollment; Adds more verbosity for scoring (closes #98)Improves verbosity for preprocessing, extraction and enrollment; Adds more verbosity for scoring (closes #98)Manuel Günthersiebenkopf@googlemail.comManuel Günthersiebenkopf@googlemail.comhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/116Allow for comment lines in file-lists2017-11-14T11:26:25ZAmir MOHAMMADIAllow for comment lines in file-listsAmir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/115Stacks of extractors: Fix when no extractor requires training2017-11-14T17:45:30ZAmir MOHAMMADIStacks of extractors: Fix when no extractor requires trainingManuel Günthersiebenkopf@googlemail.comManuel Günthersiebenkopf@googlemail.comhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/114Test filelist databases when no zt files exist2017-11-10T18:40:53ZAmir MOHAMMADITest filelist databases when no zt files existAmir MOHAMMADIAmir MOHAMMADIhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/113Removed global variable results2017-11-08T16:43:15ZTiago de Freitas PereiraRemoved global variable resultsThe script `bob.bio.base.scripts.collect_results` has global variable called `results` whose role is to gather the results from several directories.
Would be cleaner and more easy to reuse this module if the results were passed throug...The script `bob.bio.base.scripts.collect_results` has global variable called `results` whose role is to gather the results from several directories.
Would be cleaner and more easy to reuse this module if the results were passed throught the recursions instead of being stored in global variable.
I've just done that.
Do you mind to review that @mguenther?
ThanksManuel Günthersiebenkopf@googlemail.comManuel Günthersiebenkopf@googlemail.comhttps://gitlab.idiap.ch/bob/bob.bio.base/-/merge_requests/112SequentialExtractor: Apply extractor on training data always when apply=True2017-11-07T17:12:23ZAmir MOHAMMADISequentialExtractor: Apply extractor on training data always when apply=TrueManuel Günthersiebenkopf@googlemail.comManuel Günthersiebenkopf@googlemail.com