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Moved code to lightning

Merged Moved code to lightning
move-to-lightning into main
Merged Daniel CARRON requested to merge move-to-lightning into main
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pyproject.toml
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@@ -209,6 +209,18 @@ tbx11k_simplified_f6_rgb = "ptbench.configs.datasets.tbx11k_simplified.fold_6_rg
tbx11k_simplified_f7_rgb = "ptbench.configs.datasets.tbx11k_simplified.fold_7_rgb"
tbx11k_simplified_f8_rgb = "ptbench.configs.datasets.tbx11k_simplified.fold_8_rgb"
tbx11k_simplified_f9_rgb = "ptbench.configs.datasets.tbx11k_simplified.fold_9_rgb"
# extended TBX11K simplified dataset split 1 (with radiological signs)
tbx11k_simplified_rs = "ptbench.configs.datasets.tbx11k_simplified_RS.default"
tbx11k_simplified_rs_f0 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_0"
tbx11k_simplified_rs_f1 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_1"
tbx11k_simplified_rs_f2 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_2"
tbx11k_simplified_rs_f3 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_3"
tbx11k_simplified_rs_f4 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_4"
tbx11k_simplified_rs_f5 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_5"
tbx11k_simplified_rs_f6 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_6"
tbx11k_simplified_rs_f7 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_7"
tbx11k_simplified_rs_f8 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_8"
tbx11k_simplified_rs_f9 = "ptbench.configs.datasets.tbx11k_simplified_RS.fold_9"
# TBX11K simplified dataset split 2 (and cross-validation folds)
tbx11k_simplified_v2 = "ptbench.configs.datasets.tbx11k_simplified_v2.default"
tbx11k_simplified_v2_rgb = "ptbench.configs.datasets.tbx11k_simplified_v2.rgb"
@@ -232,6 +244,18 @@ tbx11k_simplified_v2_f6_rgb = "ptbench.configs.datasets.tbx11k_simplified_v2.fol
tbx11k_simplified_v2_f7_rgb = "ptbench.configs.datasets.tbx11k_simplified_v2.fold_7_rgb"
tbx11k_simplified_v2_f8_rgb = "ptbench.configs.datasets.tbx11k_simplified_v2.fold_8_rgb"
tbx11k_simplified_v2_f9_rgb = "ptbench.configs.datasets.tbx11k_simplified_v2.fold_9_rgb"
# extended TBX11K simplified dataset split 2 (with radiological signs)
tbx11k_simplified_v2_rs = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.default"
tbx11k_simplified_v2_rs_f0 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_0"
tbx11k_simplified_v2_rs_f1 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_1"
tbx11k_simplified_v2_rs_f2 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_2"
tbx11k_simplified_v2_rs_f3 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_3"
tbx11k_simplified_v2_rs_f4 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_4"
tbx11k_simplified_v2_rs_f5 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_5"
tbx11k_simplified_v2_rs_f6 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_6"
tbx11k_simplified_v2_rs_f7 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_7"
tbx11k_simplified_v2_rs_f8 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_8"
tbx11k_simplified_v2_rs_f9 = "ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_9"
# TBX11K simplified dataset split 3 (and cross-validation folds)
tbx11k_simplified_v3 = "ptbench.configs.datasets.tbx11k_simplified_v3.default"
tbx11k_simplified_v3_rgb = "ptbench.configs.datasets.tbx11k_simplified_v3.rgb"
@@ -255,6 +279,18 @@ tbx11k_simplified_v3_f6_rgb = "ptbench.configs.datasets.tbx11k_simplified_v3.fol
tbx11k_simplified_v3_f7_rgb = "ptbench.configs.datasets.tbx11k_simplified_v3.fold_7_rgb"
tbx11k_simplified_v3_f8_rgb = "ptbench.configs.datasets.tbx11k_simplified_v3.fold_8_rgb"
tbx11k_simplified_v3_f9_rgb = "ptbench.configs.datasets.tbx11k_simplified_v3.fold_9_rgb"
# extended TBX11K simplified dataset split 3 (with radiological signs)
tbx11k_simplified_v3_rs = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.default"
tbx11k_simplified_v3_rs_f0 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_0"
tbx11k_simplified_v3_rs_f1 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_1"
tbx11k_simplified_v3_rs_f2 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_2"
tbx11k_simplified_v3_rs_f3 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_3"
tbx11k_simplified_v3_rs_f4 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_4"
tbx11k_simplified_v3_rs_f5 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_5"
tbx11k_simplified_v3_rs_f6 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_6"
tbx11k_simplified_v3_rs_f7 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_7"
tbx11k_simplified_v3_rs_f8 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_8"
tbx11k_simplified_v3_rs_f9 = "ptbench.configs.datasets.tbx11k_simplified_v3_RS.fold_9"
# montgomery-shenzhen aggregated dataset
mc_ch = "ptbench.configs.datasets.mc_ch.default"
mc_ch_rgb = "ptbench.configs.datasets.mc_ch.rgb"
@@ -350,6 +386,19 @@ mc_ch_in_11k_f6_rgb = "ptbench.configs.datasets.mc_ch_in_11k.fold_6_rgb"
mc_ch_in_11k_f7_rgb = "ptbench.configs.datasets.mc_ch_in_11k.fold_7_rgb"
mc_ch_in_11k_f8_rgb = "ptbench.configs.datasets.mc_ch_in_11k.fold_8_rgb"
mc_ch_in_11k_f9_rgb = "ptbench.configs.datasets.mc_ch_in_11k.fold_9_rgb"
# extended montgomery-shenzhen-indian-tbx11k aggregated dataset
# (with radiological signs)
mc_ch_in_11k_rs = "ptbench.configs.datasets.mc_ch_in_11k_RS.default"
mc_ch_in_11k_rs_f0 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_0"
mc_ch_in_11k_rs_f1 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_1"
mc_ch_in_11k_rs_f2 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_2"
mc_ch_in_11k_rs_f3 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_3"
mc_ch_in_11k_rs_f4 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_4"
mc_ch_in_11k_rs_f5 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_5"
mc_ch_in_11k_rs_f6 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_6"
mc_ch_in_11k_rs_f7 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_7"
mc_ch_in_11k_rs_f8 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_8"
mc_ch_in_11k_rs_f9 = "ptbench.configs.datasets.mc_ch_in_11k_RS.fold_9"
# montgomery-shenzhen-indian-tbx11kv2 aggregated dataset
mc_ch_in_11kv2 = "ptbench.configs.datasets.mc_ch_in_11kv2.default"
mc_ch_in_11kv2_rgb = "ptbench.configs.datasets.mc_ch_in_11kv2.rgb"
@@ -373,6 +422,19 @@ mc_ch_in_11kv2_f6_rgb = "ptbench.configs.datasets.mc_ch_in_11kv2.fold_6_rgb"
mc_ch_in_11kv2_f7_rgb = "ptbench.configs.datasets.mc_ch_in_11kv2.fold_7_rgb"
mc_ch_in_11kv2_f8_rgb = "ptbench.configs.datasets.mc_ch_in_11kv2.fold_8_rgb"
mc_ch_in_11kv2_f9_rgb = "ptbench.configs.datasets.mc_ch_in_11kv2.fold_9_rgb"
# extended montgomery-shenzhen-indian-tbx11kv2 aggregated dataset
# (with radiological signs)
mc_ch_in_11kv2_rs = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.default"
mc_ch_in_11kv2_rs_f0 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_0"
mc_ch_in_11kv2_rs_f1 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_1"
mc_ch_in_11kv2_rs_f2 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_2"
mc_ch_in_11kv2_rs_f3 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_3"
mc_ch_in_11kv2_rs_f4 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_4"
mc_ch_in_11kv2_rs_f5 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_5"
mc_ch_in_11kv2_rs_f6 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_6"
mc_ch_in_11kv2_rs_f7 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_7"
mc_ch_in_11kv2_rs_f8 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_8"
mc_ch_in_11kv2_rs_f9 = "ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_9"
# tbpoc dataset (and cross-validation folds)
tbpoc_f0 = "ptbench.configs.datasets.tbpoc.fold_0"
tbpoc_f1 = "ptbench.configs.datasets.tbpoc.fold_1"