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lab-speaker-recognition
Commit a2bd6372 authored by Sébastien MARCEL's avatar Sébastien MARCEL
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clean up

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    01_section_fourier.md deleted 100644 → 0
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    Makefile deleted 100644 → 0
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    TARGET := lab.pdf
    SECTIONS := $(sort $(wildcard ??_section*.md))
    # builds a single section
    %.pdf: metadata.yaml %.md
    pandoc -H header.tex -f markdown -t beamer -o $@ $?
    # builds the whole lecture
    $(TARGET): metadata.yaml $(SECTIONS)
    pandoc -H header.tex -f markdown -t beamer -o $@ $^
    all: $(TARGET)
    .PHONY: clean
    clean:
    @rm -vf $(shell find . -name "*~")
    @rm -vf $(TARGET) $(patsubst %.md,%.pdf,$(SECTIONS))
    README.md deleted 100644 → 0
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    # Biometrics Lab
    ## Description
    Slides of the lab:
    - [ ] lab 1: face,
    - [ ] lab 2: iris and fingerprint,
    - [x] lab 3: speaker,
    - [ ] lab 4: vein and multi-modal,
    - [ ] lab 5: spoofing.
    ## Lab material
    [Lab material](./lab/lab.md)
    ## LaTeX Beamer slides with pandoc
    We are using [pandoc](https://pandoc.org) to convert simple .md files into latex beamer.
    Please refer to the lecture example (git@gitlab.idiap.ch:master-biometrics/lecture-example.git) for more details.
    ## Setting up
    **You need to refer** to the same section the lecture example (git@gitlab.idiap.ch:master-biometrics/lecture-example.git) for more details.
    For a quick setup just do
    ```sh
    $ git clone git@gitlab.idiap.ch:master-biometrics/graphics.git
    $ git clone git@gitlab.idiap.ch:master-biometrics/<this-lab>.git
    $ cd <this-lab>
    $ rm -rf graphics
    $ ln -s ../graphics .
    ```
    ## Building the slides
    Proceed in 2 steps when working on the slides in .md files:
    1. edit only the .md files
    2. check if it compiles
    To compile
    * You can just compile the slides of one md file:
    ```sh
    $ make 01_section1.pdf
    ```
    ***notice the name of the make target is the filename with a `.pdf` extension***
    * Or your can compile all the slides (`lab.pdf`) that merges all sections into it.
    ```sh
    $ make
    ```
    ***The input `.md` files are sorted before inclusion, so ensure that the name sorting works fine before building the whole document.***
    * You can use flag `-B` with make to force recompilation if necessary. Otherwise, our Makefile is set to detect changes automatically.
    ```sh
    $ make -B
    ```
    It results in a ``lab.pdf`` file.
    **Please don't git add/commit/push this file nor any other PDF by-product. They are git-ignored by default.**
    beamerthemeidiapbsp.sty deleted 100644 → 0
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    \mode<presentation>
    % Requirement
    \RequirePackage{tikz}
    \RequirePackage{graphicx}
    %\RequirePackage{fontspec}
    \RequirePackage{hyperref}
    % Colors
    \definecolor{unidistancedark}{RGB}{24,70,139}
    \definecolor{unidistancelite}{RGB}{20,118,198}
    \definecolor{darkred}{RGB}{180,0,0}
    \definecolor{darkgreen}{RGB}{0,128,0}
    % Defines the background of all slides
    \setbeamertemplate{background}{
    % \begin{tikzpicture}
    % \fill[color=unidistancedark] (0,2.5) rectangle (2.5,5);
    % \fill[color=unidistancelite] (2.7,2.5) rectangle (\the\paperwidth,5);
    % \node (logo) at (0,8.3)
    % {\includegraphics[width=.5\paperwidth]{graphics/logo/idiap}};
    % \ifnum\thepage>1\relax%
    % \fill[white,opacity=1] (0,0)
    % rectangle(\the\paperwidth,\the\paperheight);
    % \fi
    % \end{tikzpicture}
    \begin{tikzpicture}
    % The x-coordinate of the image should NOT be 0 -- it is the center of the image
    \node (logo) at (2,7.5) {\includegraphics[width=.25\paperwidth]{graphics/logo/idiap}};
    \fill[color=unidistancedark] (0,3.0) rectangle (2.5,5);
    \fill[color=unidistancelite] (2.7,3.0) rectangle (\the\paperwidth,5);
    %\fill[color=white] (0,8.3) rectangle (2.5,5);
    %\fill[color=unidistancedark] (0,2.5) rectangle (2.5,5);
    %\fill[color=unidistancelite] (2.7,2.5) rectangle (\the\paperwidth,5);
    \ifnum\thepage>1\relax%
    \fill[white,opacity=1] (0,0)
    rectangle(\the\paperwidth,\the\paperheight);
    \fi
    \end{tikzpicture}
    }
    % Defines some fonts and colors
    \usefonttheme{structurebold}
    \setbeamercolor{unidistance title}{fg=white}
    %\setbeamercolor{unidistance title}{fg=unidistancedark}
    \setbeamerfont{unidistance title}{series=\bfseries,size=\large}
    \setbeamercolor{unidistance subtitle}{fg=white}
    %\setbeamercolor{unidistance subtitle}{fg=unidistancedark}
    \setbeamerfont{unidistance subtitle}{series=\bfseries,size=\normalsize}
    \setbeamercolor{unidistance author}{fg=black}
    \setbeamerfont{unidistance author}{series=\bfseries}
    % Title page
    \defbeamertemplate*{title page}{unidistance}[1][]
    {
    % Normally vkip here to overlay with the box in background
    \vskip3.2cm%
    \begin{beamercolorbox}[wd=14cm,leftskip=3cm,#1]{title page header}
    \usebeamerfont{unidistance title}\usebeamercolor[fg]{unidistance title}\inserttitle\par%
    \end{beamercolorbox}%
    \vskip0.1cm%
    \begin{beamercolorbox}[wd=14cm,leftskip=3cm,#1]{subtitle page header}
    \usebeamerfont{unidistance subtitle}\usebeamercolor[fg]{unidistance subtitle}\insertsubtitle\par%
    \end{beamercolorbox}
    \vskip1cm%
    \begin{beamercolorbox}[wd=14cm,leftskip=3cm,#1]{author}
    \usebeamerfont{unidistance author}\usebeamercolor[fg]{unidistance author}\insertauthor%
    \end{beamercolorbox}
    }
    %% Defines the frametitle header
    %\defbeamertemplate*{frametitle}{unidistance}[1][]
    %{
    % \begin{beamercolorbox}[wd=\paperwidth,ht=50pt]{frametitle}
    %
    % \begin{tikzpicture}
    % %tikz coordinates are (0,0) on the bottom left of the frame, as defined
    % %above - the format is (x,y) - (horizontal,vertical) displacements
    %
    % %use the entire region as a canvas, paint it in white
    % \useasboundingbox[fill=white](0,0) rectangle(\paperwidth,50pt);
    %
    % %%put logo, starting on the top-left (n.b.: position w.r.t. image center)
    % %\node (logo) at (.15\paperwidth+5,25pt)
    % % {\includegraphics[width=.1\paperwidth]{graphics/logo/idiap}};
    %
    % %options: title alone or title + subtitle
    % \ifx\insertframesubtitle\@empty%
    % {\node[anchor=west,unidistancedark,font=\LARGE] at (.32\paperwidth,17pt){\insertframetitle};}
    % \else%
    % {\node[anchor=west,unidistancedark,font=\Large] at (0.32\paperwidth,28pt){\insertframetitle};%
    % \node[anchor=west,unidistancelite,font=\small] at (0.32\paperwidth,14pt){\insertframesubtitle};}%
    % \fi
    % \end{tikzpicture}
    %
    % \end{beamercolorbox}
    %}
    % Title page
    \defbeamertemplate*{toc}{unidistance}[1][]
    {
    }
    % Set itemize and enumeration lists
    \setbeamertemplate{itemize items}[square]
    \setbeamercolor*{itemize item}{fg=unidistancedark}
    \setbeamercolor*{itemize subitem}{fg=unidistancedark}
    \setbeamercolor*{itemize subsubitem}{fg=unidistancedark}
    \setbeamertemplate{enumerate items}[default]
    \setbeamercolor*{enumerate item}{fg=unidistancedark}
    \setbeamercolor*{enumerate subitem}{fg=unidistancedark}
    \setbeamercolor*{enumerate subsubitem}{fg=unidistancedark}
    % Configure blocks
    \setbeamertemplate{blocks}[square]
    \setbeamercolor{block title}{bg=unidistancelite,fg=white}
    \setbeamercolor{block body}{bg=unidistancelite!10,fg=black}
    \setbeamercolor{block title alerted}{bg=darkred!80,fg=white}
    \setbeamercolor{block body alerted}{bg=red!10,fg=black}
    \setbeamercolor{block title example}{bg=darkgreen!80,fg=white}
    \setbeamercolor{block body example}{bg=green!10,fg=black}
    % Disables navigation symbols
    \setbeamertemplate{navigation symbols}{}
    % Defines the frame footer
    \setbeamertemplate{footline}{
    \begin{beamercolorbox}[wd=\the\paperwidth,ht=20pt]{section in head/foot}%
    \begin{tikzpicture}
    %use the entire region as a canvas, paint it in white
    \useasboundingbox[fill=white](0,0) rectangle(\paperwidth,20pt);
    %left box, darker color
    \path[fill=unidistancedark] (30pt,0) rectangle (110pt,20pt);
    \node[anchor=center,align=center,white,font={\fontsize{5pt}{3}\selectfont}] at (72pt,10pt) { \href{http://www.idiap.ch}{Idiap} };
    %right box, lighter color with title and page number
    \path[fill=unidistancelite] (112pt,0) rectangle (\paperwidth-30pt,20pt);
    \node[anchor=west,white,font={\fontsize{5pt}{3}\selectfont}] at (115pt,10pt) { \insertsubtitle\ | \inserttitle\ };
    \node[anchor=east,white,font={\fontsize{5pt}{3}\selectfont}] at (\paperwidth-30pt,10pt) { \insertframenumber/\inserttotalframenumber };
    \end{tikzpicture}
    \end{beamercolorbox}
    }
    % Redefines maketitle so we don't need to put it in a frame
    % User needs to do just "\maketitle" after "\begin{document}"
    \def\maketitle{%
    \ifbeamer@inframe
    \titlepage
    \else
    \begin{frame}[plain]
    \titlepage
    \end{frame}
    \fi
    }
    % Settings
    \setbeamercolor*{title page header}{fg=white}
    \setbeamercolor*{author}{fg=white}
    \setbeamercolor*{date}{fg=white}
    % Define custom front page
    \def\makefrontpage{%
    \begin{frame}[plain,c,noframenumbering]
    \begin{center}
    \includegraphics[width=.75\paperwidth]{graphics/logo/idiap}
    \vskip3em
    \bfseries\href{http://www.idiap.ch}{www.idiap.ch}
    \end{center}
    \end{frame}
    }
    % Define custom last page
    \def\makelastpage{%
    \begin{frame}[plain,c,noframenumbering]
    \begin{center}
    \includegraphics[width=.75\paperwidth]{graphics/logo/idiap}
    \vskip3em
    \bfseries\href{http://www.idiap.ch}{www.idiap.ch}
    \end{center}
    \end{frame}
    }
    \mode<all>
    graphics deleted 120000 → 0
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    ../graphics
    \ No newline at end of file
    graphics.tex deleted 100644 → 0
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    % graphics (png, pdf, ...) NOT eps (to convert to pdf with epstopdf)
    \usepackage{graphicx}
    % list of path for graphics (Warning: the / at the end of each path is important)
    \graphicspath{{graphics/}
    {graphics/idiap/}
    {graphics/projects/}
    {graphics/biometrics-group/team/}
    {graphics/logo/}
    {graphics/applications/}
    {graphics/diagrams/}
    {graphics/diagrams/face-processing/}
    {graphics/diagrams/face-processing/feature-extraction/}
    {graphics/diagrams/face-processing/geometric-norm/}
    {graphics/diagrams/face-processing/photometric-norm/}
    {graphics/diagrams/speech-processing/feature-extraction/}
    {graphics/diagrams/lbp/}
    {graphics/diagrams/pad/}
    {graphics/diagrams/cnn/}
    {graphics/diagrams/biometrics-and-antispoofing/}
    {graphics/diagrams/biometrics-and-pad/}
    {graphics/biometrics/history/}
    {graphics/biometrics/face2D/}
    {graphics/biometrics/face2D/atnt/}
    {graphics/biometrics/face2D/mobio/}
    {graphics/biometrics/face2D/swan/}
    {graphics/biometrics/face2D/fargo/}
    {graphics/biometrics/face3D/}
    {graphics/biometrics/face3D/fdv2016-smarcel/}
    {graphics/biometrics/hface/}
    {graphics/biometrics/fingerprint/}
    {graphics/biometrics/fingervein/utfvp/}
    {graphics/biometrics/palmvein/}
    {graphics/biometrics/wristvein/}
    {graphics/biometrics/wristvein/biowave/}
    {graphics/biometrics/tattoo/}
    {graphics/biometrics/voice/}
    {graphics/biometrics/iris/}
    {graphics/biometrics/signature-and-handwriting/}
    {graphics/capture-devices/fingervein/}
    {graphics/capture-devices/palmvein/}
    {graphics/capture-devices/biowave/}
    {graphics/capture-devices/swan-dc-app/}
    {graphics/presentation-attack-instrument/face/}
    {graphics/presentation-attack-instrument/face-print/}
    {graphics/presentation-attack-instrument/face-3D-mask-rigid/}
    {graphics/presentation-attack-instrument/face-3D-mask-silicone/}
    {graphics/presentation-attack-instrument/fingerprint/}
    {graphics/presentation-attack-instrument/altered-fingerprint/}
    {graphics/presentation-attack-instrument/fingervein/}
    {graphics/presentation-attack-instrument/palmvein/}
    {graphics/presentation-attack-instrument/voice-replay/}
    {graphics/results/face-rec/scores/}
    {graphics/results/face-pad/examples/}
    {graphics/results/face-pad/examples/replay-mobile/}
    {graphics/results/face-pad/sfar-scoredist/}
    {graphics/results/speaker-pad/sfar-scoredist/}
    {graphics/results/fingervein-pad/sfar-scoredist/}
    {graphics/results/palmvein-pad/sfar-scoredist/}
    {graphics/spoofing-in-movies/}
    {graphics/rr/}
    {graphics/tabularasa/}
    {graphics/beat/}
    %{graphics/biometric-center/}
    {graphics/demos/}
    }
    \DeclareGraphicsExtensions{.pdf,.jpg,.png}
    header.tex deleted 100644 → 0
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    \usetheme{idiapbsp}
    \input{settings}
    \input{graphics}
    lab/lab.md deleted 100644 → 0
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    # Lab
    Lab on
    - [x] lab 1: face,
    - [ ] lab 2: iris and fingerprint,
    - [ ] lab 3: speaker,
    - [ ] lab 4: vein and multi-modal,
    - [ ] lab 5: spoofing.
    **TODO**
    metadata.yaml deleted 100644 → 0
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    ---
    author: |
    Sébastien Marcel\
    Biometrics Security and Privacy group\
    Idiap research institute\
    Switzerland\
    \url{www.idiap.ch/~marcel}
    subject: Lab 3
    date: \today
    title: "Master Biometrics: Lab 3"
    subtitle: "Speaker recognition"
    institute: "Idiap Research Institute"
    lang: "en"
    ---
    settings.tex deleted 100644 → 0
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    %\usetheme{Pittsburgh}
    \beamertemplatenavigationsymbolsempty
    %\setbeamertemplate{footline}[frame number]
    %\setbeamertemplate{footline}{\hspace*{.5cm}\tiny{\insertshorttitle \hspace*{50pt} \hfill\insertframenumber/\inserttotalframenumber\hspace*{.5cm}} \vspace{2pt}}
    \setbeamertemplate{footline}{\hspace*{.5cm}\tiny{\, \hspace*{50pt} \hfill\insertframenumber/\inserttotalframenumber\hspace*{.5cm}} \vspace{2pt}}
    \mode<handout>{
    \usepackage{pgfpages}
    \pgfpagesuselayout{2 on 1}[a4paper,border shrink=4mm]
    %% \pgfpagesuselayout{4 on 1}[a4paper,landscape,border shrink=2mm]
    }
    \usepackage{subfigure}
    \usepackage{float}
    \usepackage{movie15}
    %\usepackage[bigfiles]{media9}
    \usepackage{animate}
    \usepackage{color}
    \usepackage{tabularx}
    \usepackage{multirow}
    \usepackage{multicol}
    \usepackage{pbox}
    \usepackage{adjustbox}
    \usepackage{amsmath} % to bold Latin letters with \mathbf{}, to make domains \mathbb{}
    \usepackage{amssymb} % additional math symbols
    \usepackage{bm} % to bold Greek (in $ $ and \[ \]) letters with \bm{}
    %\usepackage{dsfont} % blackboard font or ds font (for N,R,Q,C)
    % math symbols
    \newfont{\bb}{msbm10 scaled\magstep1}
    \newcommand{\myR}{\mbox{\bb R}}
    \newcommand{\myN}{\mbox{\bb N}}
    %\newcommand{\myurl}[1]{\href{http://#1}{#1}}
    \usepackage{url}
    \usepackage{hyperref}
    %\hypersetup{colorlinks=true,linkcolor=red,citecolor=green,filecolor=magenta,urlcolor=blue}
    \hypersetup{colorlinks=true,linkcolor=black,citecolor=green,filecolor=magenta,urlcolor=blue}
    \definecolor{blue}{rgb}{0.0,0.0,0.55}
    \definecolor{darkblue}{rgb}{0.10,0.10,0.70}
    \definecolor{red}{rgb}{1.0,0.0,0.0}
    \definecolor{darkred}{rgb}{0.75,0.0,0.0}
    \definecolor{green}{rgb}{0.0,0.80,0.0}
    \definecolor{darkgreen}{rgb}{0.0,0.5,0.0}
    \definecolor{dimmed}{rgb}{0.8,0.8,0.8}
    \mode<beamer>{
    \setbeamercolor{math text}{fg=darkblue}
    \setbeamercolor{local structure}{fg=black}
    }
    \mode<handout>{
    \setbeamercolor{math text}{fg=black}
    %% \setbeamercolor{structure}{fg=black}
    \setbeamercolor{local structure}{fg=black}
    }
    % default, triangle, circle, square et ball
    %\setbeamertemplate{itemize item}[triangle]
    \setbeamertemplate{itemize item}[circle]
    \setbeamertemplate{itemize subitem}[circle]
    \setbeamertemplate{enumerate item}[square]
    \setbeamertemplate{enumerate subitem}[circle]
    \providecommand{\tightlist}{%
    \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
    %
    \usepackage{pgfplots}
    \usepackage{tikz}
    src/voxforge_config.py deleted 100644 → 0
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    # Config script for running experiments on Voxforge
    from bob.db.voxforge import Database
    import bob.bio.spear
    import bob.bio.gmm
    groups = ['train']
    #groups = ['train', 'dev', 'eval']
    allow_missing_files = False
    skip_kmeans = False
    skip_gmm = False
    skip_extractor_training = True
    skip_projector_training = False
    skip_enroller_training = False
    voxforge_wav_directory = "[YOUR_VOXFORGE_DIRECTORY]"
    database = Database(
    original_directory=voxforge_wav_directory,
    original_extension=".wav",
    )
    database_directories_file = "path_to_voxforge.txt"
    preprocessor = bob.bio.spear.preprocessor.Energy_2Gauss()
    extractor = bob.bio.spear.extractor.Cepstral(
    win_length_ms = 20,
    win_shift_ms = 10,
    n_filters = 24,
    dct_norm = False,
    f_min = 0.0,
    f_max = 8000,
    delta_win = 2,
    mel_scale = True,
    with_energy = True,
    with_delta = False,
    with_delta_delta = False,
    n_ceps = 19, # 0-->18
    pre_emphasis_coef = 0.95,
    features_mask = numpy.arange(0,20),
    # Normalization
    normalize_flag = True,
    )
    algorithm = bob.bio.gmm.algorithm.GMM(
    number_of_gaussians = 64,
    kmeans_training_iterations = 5,
    gmm_training_iterations = 5,
    training_threshold = 0.0, # This ensure the use of maximum number of iterations as stopping criterion
    )
    verbose = 3
    grid = bob.bio.base.grid.Grid(
    number_of_preprocessing_jobs=24,
    number_of_extraction_jobs=24,
    number_of_projection_jobs=24,
    number_of_enrollment_jobs=24,
    number_of_scoring_jobs=1,
    training_queue = '16G',
    # preprocessing
    preprocessing_queue = '4G-io-big',
    # feature extraction
    extraction_queue = '4G-io-big',
    # feature projection
    projection_queue = '4G-io-big',
    # model enrollment
    enrollment_queue = '4G-io-big',
    # scoring
    scoring_queue = '4G-io-big'
    )
    #grid = None
    # a grid for testing on a local machine
    #grid = bob.bio.base.grid.Grid(
    # grid_type='local',
    # number_of_parallel_processes=1
    #)
    #run_local_scheduler = True
    #nice = 10
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