From bf16d708f193941b454f7ee62df7915ffe33d024 Mon Sep 17 00:00:00 2001
From: Samuel Gaist <samuel.gaist@idiap.ch>
Date: Wed, 27 Jan 2021 17:47:02 +0100
Subject: [PATCH] [advanced][databases][mobio] Add new version following V2
implementation
---
advanced/databases/mobio/5.json | 107 +++++++++
advanced/databases/mobio/5.py | 414 ++++++++++++++++++++++++++++++++
advanced/databases/mobio/5.rst | 1 +
3 files changed, 522 insertions(+)
create mode 100644 advanced/databases/mobio/5.json
create mode 100644 advanced/databases/mobio/5.py
create mode 100644 advanced/databases/mobio/5.rst
diff --git a/advanced/databases/mobio/5.json b/advanced/databases/mobio/5.json
new file mode 100644
index 0000000..f0bea77
--- /dev/null
+++ b/advanced/databases/mobio/5.json
@@ -0,0 +1,107 @@
+{
+ "description": "The MOBIO Database of Faces",
+ "root_folder": "/idiap/resource/database/mobio",
+ "protocols": [
+ {
+ "name": "male",
+ "template": "advanced_face_recognition/1",
+ "views": {
+ "train": {
+ "view": "Train",
+ "parameters": {
+ "protocol": "male",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ },
+ "dev_templates": {
+ "view": "Templates",
+ "parameters": {
+ "protocol": "male",
+ "group": "dev",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ },
+ "dev_probes": {
+ "view": "Probes",
+ "parameters": {
+ "protocol": "male",
+ "group": "dev",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ },
+ "test_templates": {
+ "view": "Templates",
+ "parameters": {
+ "protocol": "male",
+ "group": "eval",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ },
+ "test_probes": {
+ "view": "Probes",
+ "parameters": {
+ "protocol": "male",
+ "group": "eval",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ }
+ }
+ },
+ {
+ "name": "female",
+ "template": "advanced_face_recognition/1",
+ "views": {
+ "train": {
+ "view": "Train",
+ "parameters": {
+ "protocol": "female",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ },
+ "dev_templates": {
+ "view": "Templates",
+ "parameters": {
+ "protocol": "female",
+ "group": "dev",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ },
+ "dev_probes": {
+ "view": "Probes",
+ "parameters": {
+ "protocol": "female",
+ "group": "dev",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ },
+ "test_templates": {
+ "view": "Templates",
+ "parameters": {
+ "protocol": "female",
+ "group": "eval",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ },
+ "test_probes": {
+ "view": "Probes",
+ "parameters": {
+ "protocol": "female",
+ "group": "eval",
+ "images": "IMAGES_PNG",
+ "annotations": "IMAGE_ANNOTATIONS"
+ }
+ }
+ }
+ }
+ ],
+ "schema_version": 2
+}
\ No newline at end of file
diff --git a/advanced/databases/mobio/5.py b/advanced/databases/mobio/5.py
new file mode 100644
index 0000000..1cbb8fa
--- /dev/null
+++ b/advanced/databases/mobio/5.py
@@ -0,0 +1,414 @@
+###############################################################################
+# #
+# Copyright (c) 2018 Idiap Research Institute, http://www.idiap.ch/ #
+# Contact: beat.support@idiap.ch #
+# #
+# This file is part of the beat.examples module of the BEAT platform. #
+# #
+# Commercial License Usage #
+# Licensees holding valid commercial BEAT licenses may use this file in #
+# accordance with the terms contained in a written agreement between you #
+# and Idiap. For further information contact tto@idiap.ch #
+# #
+# Alternatively, this file may be used under the terms of the GNU Affero #
+# Public License version 3 as published by the Free Software and appearing #
+# in the file LICENSE.AGPL included in the packaging of this file. #
+# The BEAT platform is distributed in the hope that it will be useful, but #
+# WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY #
+# or FITNESS FOR A PARTICULAR PURPOSE. #
+# #
+# You should have received a copy of the GNU Affero Public License along #
+# with the BEAT platform. If not, see http://www.gnu.org/licenses/. #
+# #
+###############################################################################
+
+import os
+import numpy as np
+from collections import namedtuple
+
+from beat.backend.python.database import View
+
+import bob.io.base
+import bob.io.image
+import bob.db.mobio
+
+
+#----------------------------------------------------------
+
+
+class Train(View):
+ """Outputs:
+ - image: "{{ system_user.username }}/array_3d_uint8/1"
+ - eye_centers: "{{ system_user.username }}/eye_positions/1"
+ - file_id: "{{ system_user.username }}/uint64/1"
+ - client_id: "{{ system_user.username }}/uint64/1"
+
+ One "file_id" is associated with a given "image".
+ One "eye_centers" is associated with a given "image".
+ Several "image" are associated with a given "client_id".
+
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | image | | image | | image | | image | | image | | image |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | eye_centers | | eye_centers | | eye_centers | | eye_centers | | eye_centers | | eye_centers |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | file_id | | file_id | | file_id | | file_id | | file_id | | file_id |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ ----------------------------------------------- -----------------------------------------------
+ | client_id | | client_id |
+ ----------------------------------------------- -----------------------------------------------
+ """
+
+ def index(self, root_folder, parameters):
+ Entry = namedtuple('Entry', ['client_id', 'file_id', 'eye_centers', 'image'])
+
+ # Open the database and load the objects to provide via the outputs
+ annotations = parameters['annotations']
+ if not os.path.isabs(annotations):
+ annotations = os.path.join(root_folder, annotations)
+
+ images = parameters['images']
+ if not os.path.isabs(images):
+ images = os.path.join(root_folder, images)
+
+ db = bob.db.mobio.Database(annotation_directory=annotations)
+
+ objs = sorted(db.objects(protocol=parameters['protocol'],
+ groups='world',
+ purposes='train'),
+ key=lambda x: (x.client_id, x.id))
+
+ return [ Entry(x.client_id, x.id, db.annotations(x), x.make_path(images, '.png'))
+ for x in objs ]
+
+
+ def get(self, output, index):
+ obj = self.objs[index]
+
+ if output == 'client_id':
+ return {
+ 'value': np.uint64(obj.client_id)
+ }
+
+ elif output == 'file_id':
+ return {
+ 'value': np.uint64(obj.file_id)
+ }
+
+ elif output == 'eye_centers':
+ return {
+ 'left': {
+ 'y': np.int32(obj.eye_centers['leye'][0]),
+ 'x': np.int32(obj.eye_centers['leye'][1]),
+ },
+ 'right': {
+ 'y': np.int32(obj.eye_centers['reye'][0]),
+ 'x': np.int32(obj.eye_centers['reye'][1]),
+ }
+ }
+
+ elif output == 'image':
+ return {
+ 'value': bob.io.base.load(obj.image)
+ }
+
+
+#----------------------------------------------------------
+
+
+class Templates(View):
+ """Outputs:
+ - image: "{{ system_user.username }}/array_3d_uint8/1"
+ - eye_centers: "{{ system_user.username }}/eye_positions/1"
+ - file_id: "{{ system_user.username }}/uint64/1"
+ - template_id: "{{ system_user.username }}/uint64/1"
+ - client_id: "{{ system_user.username }}/uint64/1"
+
+ One "file_id" is associated with a given "image".
+ One "eye_centers" is associated with a given "image".
+ Several "image" are associated with a given "template_id".
+ Several "template_id" are associated with a given "client_id".
+
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | image | | image | | image | | image | | image | | image |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | eye_centers | | eye_centers | | eye_centers | | eye_centers | | eye_centers | | eye_centers |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | file_id | | file_id | | file_id | | file_id | | file_id | | file_id |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ ----------------------------------------------- -----------------------------------------------
+ | template_id | | template_id |
+ ----------------------------------------------- -----------------------------------------------
+ -----------------------------------------------------------------------------------------------
+ | client_id |
+ -----------------------------------------------------------------------------------------------
+
+ Note: for this particular database, there is only one "template_id"
+ per "client_id".
+ """
+
+ def index(self, root_folder, parameters):
+ Entry = namedtuple('Entry', ['client_id', 'template_id', 'file_id', 'eye_centers', 'image'])
+
+ # Open the database and load the objects to provide via the outputs
+ annotations = parameters['annotations']
+ if not os.path.isabs(annotations):
+ annotations = os.path.join(root_folder, annotations)
+
+ images = parameters['images']
+ if not os.path.isabs(images):
+ images = os.path.join(root_folder, images)
+
+ db = bob.db.mobio.Database(annotation_directory=annotations)
+
+ template_ids = db.model_ids(protocol=parameters['protocol'],
+ groups=parameters['group'])
+
+ entries = []
+
+ for template_id in template_ids:
+ objs = db.objects(protocol=parameters['protocol'],
+ groups=parameters['group'],
+ purposes='enroll',
+ model_ids=[template_id])
+
+ entries.extend([ Entry(x.client_id, template_id, x.id, db.annotations(x),
+ x.make_path(images, '.png'))
+ for x in objs ])
+
+ return sorted(entries, key=lambda x: (x.client_id, x.template_id, x.file_id))
+
+
+ def get(self, output, index):
+ obj = self.objs[index]
+
+ if output == 'client_id':
+ return {
+ 'value': np.uint64(obj.client_id)
+ }
+
+ elif output == 'template_id':
+ return {
+ 'value': np.uint64(obj.template_id)
+ }
+
+ elif output == 'file_id':
+ return {
+ 'value': np.uint64(obj.file_id)
+ }
+
+ elif output == 'eye_centers':
+ return {
+ 'left': {
+ 'y': np.int32(obj.eye_centers['leye'][0]),
+ 'x': np.int32(obj.eye_centers['leye'][1]),
+ },
+ 'right': {
+ 'y': np.int32(obj.eye_centers['reye'][0]),
+ 'x': np.int32(obj.eye_centers['reye'][1]),
+ }
+ }
+
+ elif output == 'image':
+ return {
+ 'value': bob.io.base.load(obj.image)
+ }
+
+
+#----------------------------------------------------------
+
+
+class Probes(View):
+ """Outputs:
+ - image: "{{ system_user.username }}/array_3d_uint8/1"
+ - eye_centers: "{{ system_user.username }}/eye_positions/1"
+ - file_id: "{{ system_user.username }}/uint64/1"
+ - probe_id: "{{ system_user.username }}/uint64/1"
+ - client_id: "{{ system_user.username }}/uint64/1"
+ - template_ids: "{{ system_user.username }}/array_1d_uint64/1"
+
+ One "file_id" is associated with a given "image".
+ One "eye_centers" is associated with a given "image".
+ One "probe_id" is associated with a given "image".
+ Several "image" are associated with a given "client_id".
+ Several "client_id" are associated with a given "template_ids".
+
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | image | | image | | image | | image | | image | | image |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | eye_centers | | eye_centers | | eye_centers | | eye_centers | | eye_centers | | eye_centers |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | file_id | | file_id | | file_id | | file_id | | file_id | | file_id |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ | probe_id | | probe_id | | probe_id | | probe_id | | probe_id | | probe_id |
+ --------------- --------------- --------------- --------------- --------------- ---------------
+ ----------------------------------------------- -----------------------------------------------
+ | client_id | | client_id |
+ ----------------------------------------------- -----------------------------------------------
+ -----------------------------------------------------------------------------------------------
+ | template_ids |
+ -----------------------------------------------------------------------------------------------
+ """
+
+ def index(self, root_folder, parameters):
+ Entry = namedtuple('Entry', ['template_ids', 'client_id', 'probe_id', 'file_id',
+ 'eye_centers', 'image'])
+
+ # Open the database and load the objects to provide via the outputs
+ annotations = parameters['annotations']
+ if not os.path.isabs(annotations):
+ annotations = os.path.join(root_folder, annotations)
+
+ images = parameters['images']
+ if not os.path.isabs(images):
+ images = os.path.join(root_folder, images)
+
+ db = bob.db.mobio.Database(annotation_directory=annotations)
+
+ template_ids = sorted(db.model_ids(protocol=parameters['protocol'],
+ groups=parameters['group']))
+
+
+ template_probes = {}
+ for template_id in template_ids:
+ objs = sorted(db.objects(protocol=parameters['protocol'],
+ groups=parameters['group'],
+ purposes='probe',
+ model_ids=[template_id]),
+ key=lambda x: (x.client_id, x.id))
+
+ template_probes[template_id] = [ p.id for p in objs ]
+
+
+ objs = sorted(db.objects(protocol=parameters['protocol'],
+ groups=parameters['group'],
+ purposes='probe'),
+ key=lambda x: (x.client_id, x.id))
+
+ entries = []
+ for obj in objs:
+ templates = [ template_id for template_id in template_ids
+ if obj.id in template_probes[template_id] ]
+
+ entries.append( Entry(templates, obj.client_id, obj.id, obj.id,
+ db.annotations(obj), obj.make_path(images, '.png')) )
+
+ return sorted(entries, key=lambda x: (len(x.template_ids), x.template_ids,
+ x.client_id, x.probe_id))
+
+
+ def get(self, output, index):
+ obj = self.objs[index]
+
+ if output == 'template_ids':
+ return {
+ 'value': np.uint64(obj.template_ids)
+ }
+
+ elif output == 'client_id':
+ return {
+ 'value': np.uint64(obj.client_id)
+ }
+
+ elif output == 'probe_id':
+ return {
+ 'value': np.uint64(obj.probe_id)
+ }
+
+ elif output == 'file_id':
+ return {
+ 'value': np.uint64(obj.file_id)
+ }
+
+ elif output == 'eye_centers':
+ return {
+ 'left': {
+ 'y': np.int32(obj.eye_centers['leye'][0]),
+ 'x': np.int32(obj.eye_centers['leye'][1]),
+ },
+ 'right': {
+ 'y': np.int32(obj.eye_centers['reye'][0]),
+ 'x': np.int32(obj.eye_centers['reye'][1]),
+ }
+ }
+
+ elif output == 'image':
+ return {
+ 'value': bob.io.base.load(obj.image)
+ }
+
+
+#----------------------------------------------------------
+
+
+def setup_tests():
+ # Install a mock load function for the images
+ def mock_load(root_folder):
+ return np.ndarray((3, 10, 20), dtype=np.uint8)
+
+ bob.io.base.load = mock_load
+
+
+#----------------------------------------------------------
+
+
+# Test the behavior of the views (on fake data)
+if __name__ == '__main__':
+
+ setup_tests()
+
+ # Note: This database can't be tested without the actual data, since
+ # the actual files are needed by this implementation
+
+ view = Train()
+ view.objs = view.index(
+ root_folder='',
+ parameters=dict(
+ protocol='male',
+ annotations='../IMAGE_ANNOTATIONS',
+ )
+ )
+ view.get('client_id', 0)
+ view.get('file_id', 0)
+ view.get('eye_centers', 0)
+ view.get('image', 0)
+
+
+ view = Templates()
+ view.objs = view.index(
+ root_folder='',
+ parameters=dict(
+ protocol='male',
+ group='dev',
+ annotations='../IMAGE_ANNOTATIONS',
+ )
+ )
+ view.get('client_id', 0)
+ view.get('template_id', 0)
+ view.get('file_id', 0)
+ view.get('eye_centers', 0)
+ view.get('image', 0)
+
+
+ view = Probes()
+ view.objs = view.index(
+ root_folder='',
+ parameters=dict(
+ protocol='male',
+ group='dev',
+ annotations='../IMAGE_ANNOTATIONS',
+ )
+ )
+ view.get('template_ids', 0)
+ view.get('client_id', 0)
+ view.get('probe_id', 0)
+ view.get('file_id', 0)
+ view.get('eye_centers', 0)
+ view.get('image', 0)
diff --git a/advanced/databases/mobio/5.rst b/advanced/databases/mobio/5.rst
new file mode 100644
index 0000000..6e381f9
--- /dev/null
+++ b/advanced/databases/mobio/5.rst
@@ -0,0 +1 @@
+The MOBIO Database of Faces
\ No newline at end of file
--
GitLab