Various fixes (detected on the platform)

advanced/databases/atnt/4.json

@@ -48,7 +48,7 @@
         {
           "name": "train",
           "template": "train",
-          "view": "Train",
+          "view": "TrainEyePositions",
           "outputs": {
             "file_id": "{{ system_user.username }}/uint64/1",
             "client_id": "{{ system_user.username }}/uint64/1",
@@ -59,7 +59,7 @@
         {
           "name": "dev_templates",
           "template": "templates",
-          "view": "Templates",
+          "view": "TemplatesEyePositions",
           "parameters": {
             "group": "dev"
           },
@@ -74,7 +74,7 @@
         {
           "name": "dev_probes",
           "template": "probes",
-          "view": "Probes",
+          "view": "ProbesEyePositions",
           "parameters": {
             "group": "dev"
           },
@@ -90,7 +90,7 @@
         {
           "name": "test_templates",
           "template": "templates",
-          "view": "Templates",
+          "view": "TemplatesEyePositions",
           "parameters": {
             "group": "eval"
           },
@@ -105,7 +105,7 @@
         {
           "name": "test_probes",
           "template": "probes",
-          "view": "Probes",
+          "view": "ProbesEyePositions",
           "parameters": {
             "group": "eval"
           },

advanced/databases/banca/3.py

@@ -445,7 +445,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'value': np.uint64(template_ids)
                 },
                 template_ids_end_index
             )

advanced/databases/banca/3.rst

-.. Copyright (c) 2016 Idiap Research Institute, http://www.idiap.ch/          ..
+.. Copyright (c) 2017 Idiap Research Institute, http://www.idiap.ch/          ..
 .. Contact: beat.support@idiap.ch                                             ..
 ..                                                                            ..
 .. This file is part of the beat.examples module of the BEAT platform.        ..

advanced/databases/biosecurid_face/2.py

@@ -397,7 +397,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'value': np.uint64(template_ids)
                 },
                 template_ids_end_index
             )

advanced/databases/biosecurid_face/2.rst

-.. Copyright (c) 2016 Idiap Research Institute, http://www.idiap.ch/          ..
+.. Copyright (c) 2017 Idiap Research Institute, http://www.idiap.ch/          ..
 .. Contact: beat.support@idiap.ch                                             ..
 ..                                                                            ..
 .. This file is part of the beat.examples module of the BEAT platform.        ..

advanced/databases/casme2/3.py

@@ -104,7 +104,7 @@ class View:
         # Open the database and load the objects to provide via the outputs
         self.db = bob.db.casme2.Database()
 
-        self.objs = sorted(self.db.objects(protocol=parameters['protocol'],
+        self.objs = sorted(self.db.objects(protocol=str(parameters['protocol']),
                                            groups=parameters['group']),
                            key=lambda x: (x.emotion, x.client_id, x.id))
 
@@ -171,7 +171,11 @@ class View:
         if self.outputs['image'].isConnected():
             frames = obj.frames
 
-            filename = str(os.path.join(obj.make_path(self.root_folder), frames[0].filename))
+            filename = str(os.path.join(obj.make_path(), frames[0].filename))
+
+            # Bugfix: the database returns invalid paths...
+            filename = filename.replace('/idiap/resource/database/CASME2/Cropped', self.root_folder)
+
             frame = bob.io.base.load(filename)
 
             data = np.zeros(shape=(len(frames), frame.shape[0], frame.shape[1], frame.shape[2]), dtype="uint8")
@@ -179,6 +183,10 @@ class View:
 
             for i in range(1, len(frames)):
                 filename = str(os.path.join(obj.make_path(self.root_folder), frames[i].filename))
+
+                # Bugfix: the database returns invalid paths...
+                filename = filename.replace('/idiap/resource/database/CASME2/Cropped', self.root_folder)
+
                 data[i] = bob.io.base.load(filename)
 
             self.outputs['image'].write(

advanced/databases/cbsr_nir_vis_2/3.py

@@ -23,7 +23,7 @@
 ###############################################################################
 
 import os
-import numpy
+import numpy as np
 import bob.io.base
 import bob.io.image
 import bob.db.cbsr_nir_vis_2
@@ -459,7 +459,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'text': template_ids
                 },
                 template_ids_end_index
             )

advanced/databases/frgc/3.py

@@ -23,7 +23,7 @@
 ###############################################################################
 
 import os
-import numpy
+import numpy as np
 import bob.io.base
 import bob.io.image
 import bob.db.frgc
@@ -104,7 +104,7 @@ class Train:
         self.outputs     = outputs
 
         # Open the database and load the objects to provide via the outputs
-        self.db = bob.db.frgc.Database()
+        self.db = bob.db.frgc.Database(original_directory=root_folder)
 
         self.objs = sorted(self.db.objects(protocol=parameters['protocol'],
                                            groups='world',
@@ -157,7 +157,7 @@ class Train:
         # Output: image (provide data at each iteration)
         if self.outputs['image'].isConnected():
             filename = obj.make_path(self.root_folder, '.jpg')
-            if not os.path.exists(path):
+            if not os.path.exists(filename):
                 path = obj.make_path(self.root_folder, '.JPG')
 
             self.outputs['image'].write(
@@ -200,7 +200,7 @@ class Templates:
         - image: "{{ system_user.username }}/array_3d_uint8/1"
         - file_id: "{{ system_user.username }}/text/1"
         - eye_centers: "{{ system_user.username }}/eye_positions/1"
-        - template_id: "{{ system_user.username }}/text/1"
+        - template_id: "{{ system_user.username }}/uint64/1"
         - client_id: "{{ system_user.username }}/text/1"
 
     One "file_id" is associated with a given "image".
@@ -234,7 +234,7 @@ class Templates:
         self.parameters  = parameters
 
         # Open the database and load the objects to provide via the outputs
-        self.db = bob.db.frgc.Database()
+        self.db = bob.db.frgc.Database(original_directory=root_folder)
 
         template_ids = self.db.model_ids(protocol=parameters['protocol'],
                                          groups='dev',
@@ -282,7 +282,7 @@ class Templates:
 
             self.outputs['template_id'].write(
                 {
-                    'text': template_id
+                    'value': np.uint64(template_id)
                 },
                 template_end_index
             )
@@ -315,7 +315,7 @@ class Templates:
         # Output: image (provide data at each iteration)
         if self.outputs['image'].isConnected():
             filename = obj.make_path(self.root_folder, '.jpg')
-            if not os.path.exists(path):
+            if not os.path.exists(filename):
                 path = obj.make_path(self.root_folder, '.JPG')
 
             self.outputs['image'].write(
@@ -360,7 +360,7 @@ class Probes:
         - eye_centers: "{{ system_user.username }}/eye_positions/1"
         - probe_id: "{{ system_user.username }}/text/1"
         - client_id: "{{ system_user.username }}/text/1"
-        - template_ids: "{{ system_user.username }}/array_1d_text/1"
+        - template_ids: "{{ system_user.username }}/array_1d_uint64/1"
 
     One "file_id" is associated with a given "image".
     One "eye_centers" is associated with a given "image".
@@ -397,7 +397,7 @@ class Probes:
         self.parameters  = parameters
 
         # Open the database and load the objects to provide via the outputs
-        self.db = bob.db.frgc.Database()
+        self.db = bob.db.frgc.Database(original_directory=root_folder)
 
         template_ids = sorted(self.db.model_ids(protocol=parameters['protocol'],
                                                 groups='dev',
@@ -457,7 +457,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'value': np.uint64(template_ids)
                 },
                 template_ids_end_index
             )
@@ -499,7 +499,7 @@ class Probes:
         # Output: image (provide data at each iteration)
         if self.outputs['image'].isConnected():
             filename = obj.make_path(self.root_folder, '.jpg')
-            if not os.path.exists(path):
+            if not os.path.exists(filename):
                 path = obj.make_path(self.root_folder, '.JPG')
 
             self.outputs['image'].write(

advanced/databases/gbu/3.py

@@ -447,7 +447,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'value': np.uint64(template_ids)
                 },
                 template_ids_end_index
             )

advanced/databases/kboc16/3.json

@@ -17,7 +17,7 @@
             "file_id": "{{ system_user.username }}/uint64/1",
             "client_id": "{{ system_user.username }}/text/1",
             "template_id": "{{ system_user.username }}/text/1",
-            "keystroke": "{{ user.username }}/kboc16_keystroke/1"
+            "keystroke": "{{ system_user.username }}/kboc16_keystroke/1"
           }
         },
         {
@@ -32,7 +32,7 @@
             "probe_id": "{{ system_user.username }}/uint64/1",
             "client_id": "{{ system_user.username }}/text/1",
             "template_ids": "{{ system_user.username }}/array_1d_text/1",
-            "keystroke": "{{ user.username }}/kboc16_keystroke/1"
+            "keystroke": "{{ system_user.username }}/kboc16_keystroke/1"
           }
         }
       ]

advanced/databases/kboc16/3.py

@@ -36,11 +36,11 @@ def keystroke_reader(filename):
 
     for line in open(filename, 'r').readlines():
         parts = string.split(line)
-        times.append(numpy.int32(parts[1]))
+        times.append(np.int32(parts[1]))
         keys.append(parts[0])
 
     return dict(
-        holdtime = times,
+        timestamps = times,
         key_events = keys,
     )
 
@@ -89,7 +89,7 @@ def get_value_end_index(objs, value, index_in_tuple, value_start_index,
 
 class Templates:
     """Outputs:
-        - keystroke: "{{ user.username }}/kboc16_keystroke/1
+        - keystroke: "{{ system_user.username }}/kboc16_keystroke/1
         - file_id: "{{ system_user.username }}/uint64/1"
         - template_id: "{{ system_user.username }}/text/1"
         - client_id: "{{ system_user.username }}/text/1"
@@ -225,7 +225,7 @@ class Templates:
 
 class Probes:
     """Outputs:
-        - keystroke: "{{ user.username }}/kboc16_keystroke/1
+        - keystroke: "{{ system_user.username }}/kboc16_keystroke/1
         - file_id: "{{ system_user.username }}/uint64/1"
         - client_id: "{{ system_user.username }}/text/1"
         - probe_id: "{{ system_user.username }}/uint64/1",

advanced/databases/lfw/3.py

@@ -395,7 +395,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'value': np.uint64(template_ids)
                 },
                 template_ids_end_index
             )

advanced/databases/mnist/3.py

@@ -29,12 +29,12 @@ import bob.db.mnist
 #----------------------------------------------------------
 
 
-def get_label_end_index(labels, label, label_start_index,
+def get_label_end_index(objs, label, label_start_index,
                         start_index, end_index):
     label_end_index = label_start_index
 
     while label_end_index + 1 <= end_index:
-        label_ = labels[label_end_index + 1 - start_index]
+        label_ = objs[label_end_index + 1 - start_index][1]
 
         if label_ != label:
             return label_end_index
@@ -78,7 +78,9 @@ class View:
         # Open the database and load the objects to provide via the outputs
         self.db = bob.db.mnist.Database(data_dir=self.root_folder)
 
-        self.features, self.labels = sorted(self.db.data(groups=parameters['group']),
+        features, labels = self.db.data(groups=parameters['group'])
+
+        self.objs = sorted([ (features[i], labels[i]) for i in range(len(features)) ],
                            key=lambda x: x[1])
 
         # Determine the range of indices that must be provided
@@ -97,14 +99,13 @@ class View:
 
 
     def next(self):
-        features = self.features[self.next_index - self.start_index, :]
-        label = self.labels[self.next_index - self.start_index]
+        features, label = self.objs[self.next_index - self.start_index]
 
         # Output: class_id (only provide data when the class_id change)
         if self.outputs['class_id'].isConnected() and \
            self.outputs['class_id'].last_written_data_index < self.next_index:
 
-            label_end_index = get_label_end_index(self.labels, label,
+            label_end_index = get_label_end_index(self.objs, label,
                                                   self.next_index,
                                                   self.start_index,
                                                   self.end_index)

advanced/databases/mobio/3.py

@@ -459,7 +459,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'value': np.uint64(template_ids)
                 },
                 template_ids_end_index
             )

advanced/databases/utfvp/3.py

@@ -379,7 +379,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'text': template_ids
                 },
                 end_index
             )

advanced/databases/voxforge/3.py

@@ -401,7 +401,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'text': template_ids
                 },
                 template_ids_end_index
             )

advanced/databases/xm2vts/3.py

@@ -449,7 +449,7 @@ class Probes:
 
             self.outputs['template_ids'].write(
                 {
-                    'value': template_ids
+                    'value': np.uint64(template_ids)
                 },
                 template_ids_end_index
             )

advanced/dataformats/username/kboc16_keystroke/1.json → system/dataformats/system_username/kboc16_keystroke/1.json

 {
   "#description": "Raw KBOC16 keystroke data",
-  "holdtime": [0, "int32"],
+  "timestamps": [0, "int32"],
   "key_events": [0, "string"]
 }