diff --git a/conda/js/.babelrc b/conda/js/.babelrc
deleted file mode 100644
index c9512750d0317254a4bba9ab7dff5420462de6f3..0000000000000000000000000000000000000000
--- a/conda/js/.babelrc
+++ /dev/null
@@ -1,33 +0,0 @@
-{
- "plugins": [
- "@babel/plugin-syntax-flow",
- "@babel/plugin-proposal-object-rest-spread",
- "@babel/plugin-proposal-class-properties"
- ],
- "presets": [
- "@babel/preset-react",
- [
- "@babel/preset-env",
- {
- "modules": false,
- "debug": true,
- "targets": {
- "browsers": [
- "last 1 Firefox versions",
- "last 1 Chrome versions"
- ]
- }
- }
- ],
- "@babel/preset-flow"
- ],
- "env": {
- "test": {
- "plugins": [
- ]
- }
- },
- "ignore": [
- "node_modules"
- ]
-}
diff --git a/conda/js/.eslintrc.js b/conda/js/.eslintrc.js
deleted file mode 100644
index 57b440075903fbca5a04af84fede8d6b7803b1d1..0000000000000000000000000000000000000000
--- a/conda/js/.eslintrc.js
+++ /dev/null
@@ -1,57 +0,0 @@
-module.exports = {
- env: {
- 'browser': true,
- 'worker': true,
-
- },
- parserOptions: {
- 'parser': 'babel-eslint',
- 'ecmaVersion': 8,
- 'sourceType': 'module',
- 'modules': true,
- 'ecmaFeatures': {
- 'jsx': true,
- 'impliedStrict': true,
- 'experimentalObjectRestSpread': true,
- },
- },
- extends: [
- 'plugin:react/recommended',
- 'plugin:flowtype/recommended',
- ],
- plugins: [
- // lints for browser support (APIs and such)
- // uses browserslist tech
- 'compat',
- // react
- 'react',
- // flow type annotations
- 'flowtype',
- ],
- rules: {
- // tabs not spaces
- 'indent': [
- 'error',
- 'tab',
- // indent for switch statements
- {
- 'SwitchCase': 1,
- 'MemberExpression': 0
- }
- ],
- // we want tabs
- 'no-tabs': 0,
- // only unix endings
- 'linebreak-style': ['error', 'unix'],
- // single quotes & double quotes are the same,
- // but encourage single quotes cuz its one less
- // button press
- 'quotes': ['error', 'single', { 'allowTemplateLiterals': true }],
- // always use semi-colons at end of statements
- 'semi': ['error', 'always'],
- // errors from compat are real errors
- 'compat/compat': 2,
- // always have spaces in template strings curly braces
- 'template-curly-spacing': ['error', 'always'],
- }
-};
diff --git a/conda/js/.flowconfig b/conda/js/.flowconfig
deleted file mode 100644
index 8fcfd3c568cbf11cddd1723851792f8d3db379b9..0000000000000000000000000000000000000000
--- a/conda/js/.flowconfig
+++ /dev/null
@@ -1,19 +0,0 @@
-[ignore]
-<PROJECT_ROOT>/node_modules/
-.*\.spec\.jsx
-
-[include]
-<PROJECT_ROOT>/node_modules/react-dom/
-<PROJECT_ROOT>/node_modules/react-router-dom/
-<PROJECT_ROOT>/node_modules/reactstrap/
-<PROJECT_ROOT>/src/*
-
-[libs]
-<PROJECT_ROOT>/flow-typed/
-
-[lints]
-
-[options]
-module.name_mapper='^@helpers' ->'<PROJECT_ROOT>/src/helpers'
-module.name_mapper='^@store' ->'<PROJECT_ROOT>/src/store'
-module.name_mapper='^@test' ->'<PROJECT_ROOT>/test'
diff --git a/conda/js/.postcssrc b/conda/js/.postcssrc
deleted file mode 100644
index e64b38713ab2e2ac7b1368d33496e0fc2d4e8d00..0000000000000000000000000000000000000000
--- a/conda/js/.postcssrc
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "plugins": {
- "postcss-smart-import": {},
- "postcss-cssnext": {}
- }
-}
diff --git a/conda/js/.stylelintrc b/conda/js/.stylelintrc
deleted file mode 100644
index 7fd1f96872c599c40d85a8b4960345e797ea718b..0000000000000000000000000000000000000000
--- a/conda/js/.stylelintrc
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "extends": "stylelint-config-standard",
- "rules": {
- "indentation": "tab"
- }
-}
diff --git a/conda/js/.tern-project b/conda/js/.tern-project
deleted file mode 100644
index 1c7aa90e14a6268f2a6f3214b2c10ff5ac7af9cc..0000000000000000000000000000000000000000
--- a/conda/js/.tern-project
+++ /dev/null
@@ -1,19 +0,0 @@
-{
- "ecmaVersion": 6,
- "libs": [
- "browser",
- "react"
- ],
- "plugins": {
- "jsx": {},
- "modules": {},
- "es_modules": {},
- "webpack": {
- "configPath": "./webpack.config.js"
- }
- },
- "loadEagerly": [
- "./src/**/*.js",
- "./src/**/*.jsx"
- ]
-}
diff --git a/conda/js/index.html b/conda/js/index.html
deleted file mode 100644
index 604daab937d4156f00826e9ce5fe2706cf52b5bb..0000000000000000000000000000000000000000
--- a/conda/js/index.html
+++ /dev/null
@@ -1,10 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
- <head>
- <meta charset="UTF-8">
- <title></title>
- </head>
- <body>
- <div id="root"></div>
- </body>
-</html>
diff --git a/conda/js/karma.conf.js b/conda/js/karma.conf.js
deleted file mode 100644
index c50582ce9334a302bd2cade6ff023688f210a7be..0000000000000000000000000000000000000000
--- a/conda/js/karma.conf.js
+++ /dev/null
@@ -1,55 +0,0 @@
-// we can just use the exact same webpack config by requiring it
-// however, remember to delete the original entry since we don't
-// need it during tests
-let webpackConfig = require('./webpack.config.js');
-delete webpackConfig.entry;
-
-// karma.conf.js
-module.exports = function (config) {
- config.set({
- browsers: [
- 'FirefoxHeadless',
- //'ChromiumHeadless',
- ],
- customLaunchers: {
- FirefoxHeadless: {
- base: 'Firefox',
- flags: ['-headless']
- }
- },
- frameworks: ['mocha'],
- // this is the entry file for all our tests.
- files: [
- './test/index.js',
- ],
- // we will pass the entry file to webpack for bundling.
- preprocessors: {
- '**/*': [ 'webpack', 'sourcemap' ],
- },
- reporters: [
- 'mocha',
- 'coverage'
- ],
-
- coverageReporter: {
- dir: './coverage',
- reporters: [
- { type: 'html', subdir: 'report-html' },
- { type: 'lcov', subdir: 'report-lcov' },
- { type: 'cobertura', subdir: '.', file: 'cobertura.txt' },
- { type: 'lcovonly', subdir: '.', file: 'report-lcovonly.txt' },
- { type: 'teamcity', subdir: '.', file: 'teamcity.txt' },
- { type: 'text', subdir: '.', file: 'text.txt' },
- { type: 'text-summary', subdir: '.', file: 'text-summary.txt' },
- ]
- },
-
- // use the webpack config
- webpack: webpackConfig,
- // avoid walls of useless text
- webpackMiddleware: {
- stats: 'errors-only'
- },
- singleRun: true,
- });
-};
diff --git a/conda/js/main.css b/conda/js/main.css
deleted file mode 100644
index 80775b9e45aeb126176c9bd04ed73da243e23333..0000000000000000000000000000000000000000
--- a/conda/js/main.css
+++ /dev/null
@@ -1,91 +0,0 @@
-pre {
- white-space: pre-wrap;
-}
-
-.preInline {
- display: inline;
-}
-
-/* react-contextmenu styling
- * taken from react-contextmenu's example CSS https://github.com/vkbansal/react-contextmenu/blob/65df2dec9737eed4e5e1b0b8fbc1018629082f89/examples/react-contextmenu.css
- * adapted to more closely conform to this repo's stylelint's settings (see .stylelintrc)
- */
-.react-contextmenu {
- min-width: 160px;
- padding: 5px 0;
- margin: 2px 0 0;
- font-size: 16px;
- color: #373a3c;
- text-align: left;
- background-color: #fff;
- background-clip: padding-box;
- border: 1px solid rgba(0, 0, 0, 0.15);
- border-radius: 0.25rem;
- outline: none;
- opacity: 0;
- pointer-events: none;
- transition: opacity 250ms ease;
-}
-
-.react-contextmenu.react-contextmenu--visible {
- opacity: 1;
- pointer-events: auto;
-}
-
-.react-contextmenu-item {
- padding: 3px 20px;
- font-weight: 400;
- line-height: 1.5;
- color: #373a3c;
- text-align: inherit;
- white-space: nowrap;
- background: 0 0;
- border: 0;
- cursor: pointer;
-}
-
-.react-contextmenu-item.react-contextmenu-item--active,
-.react-contextmenu-item.react-contextmenu-item--selected {
- color: #fff;
- background-color: #20a0ff;
- border-color: #20a0ff;
- text-decoration: none;
-}
-
-.react-contextmenu-item.react-contextmenu-item--disabled,
-.react-contextmenu-item.react-contextmenu-item--disabled:hover {
- color: #878a8c;
- background-color: transparent;
- border-color: rgba(0, 0, 0, 0.15);
-}
-
-.react-contextmenu-item--divider {
- margin-bottom: 3px;
- padding: 2px 0;
- border-bottom: 1px solid rgba(0, 0, 0, 0.15);
- cursor: inherit;
-}
-
-.react-contextmenu-item--divider:hover {
- background-color: transparent;
- border-color: rgba(0, 0, 0, 0.15);
-}
-
-.react-contextmenu-item.react-contextmenu-submenu {
- padding: 0;
-}
-
-.react-contextmenu-item.react-contextmenu-submenu > .react-contextmenu-item {
-}
-
-.react-contextmenu-item.react-contextmenu-submenu > .react-contextmenu-item::after {
- content: "â–¶";
- display: inline-block;
- position: absolute;
- right: 7px;
-}
-
-.example-multiple-targets::after {
- content: attr(data-count);
- display: block;
-}
diff --git a/conda/js/main.jsx b/conda/js/main.jsx
deleted file mode 100644
index 485ab7cefe15b6ca5c702830ea618049cc11f103..0000000000000000000000000000000000000000
--- a/conda/js/main.jsx
+++ /dev/null
@@ -1,18 +0,0 @@
-// bootstrap first
-import './main.css';
-import 'bootstrap/dist/css/bootstrap.min.css';
-
-// rest of app
-import React from 'react';
-import ReactDOM from 'react-dom';
-import { Provider } from 'react-redux';
-import App from './src/components/App.jsx';
-import store from '@store';
-
-ReactDOM.render(
- <Provider store={ store }>
- <App/>
- </Provider>
- ,
- document.getElementById('root')
-);
diff --git a/conda/js/package-lock.json b/conda/js/package-lock.json
deleted file mode 100644
index e42684a9fde91fe28b35c25d53c05ad6d38cadfd..0000000000000000000000000000000000000000
--- a/conda/js/package-lock.json
+++ /dev/null
@@ -1,17510 +0,0 @@
-{
- "name": "beat.editor",
- "version": "0.0.0",
- "lockfileVersion": 1,
- "requires": true,
- "dependencies": {
- "@babel/code-frame": {
- "version": "7.0.0",
- "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.0.0.tgz",
- "integrity": "sha512-OfC2uemaknXr87bdLUkWog7nYuliM9Ij5HUcajsVcMCpQrcLmtxRbVFTIqmcSkSeYRBFBRxs2FiUqFJDLdiebA==",
- "dev": true,
- "requires": {
- "@babel/highlight": "^7.0.0"
- }
- },
- "@babel/core": {
- "version": "7.1.0",
- "resolved": "https://registry.npmjs.org/@babel/core/-/core-7.1.0.tgz",
- "integrity": "sha512-9EWmD0cQAbcXSc+31RIoYgEHx3KQ2CCSMDBhnXrShWvo45TMw+3/55KVxlhkG53kw9tl87DqINgHDgFVhZJV/Q==",
- "dev": true,
- "requires": {
- "@babel/code-frame": "^7.0.0",
- "@babel/generator": "^7.0.0",
- "@babel/helpers": "^7.1.0",
- "@babel/parser": "^7.1.0",
- "@babel/template": "^7.1.0",
- "@babel/traverse": "^7.1.0",
- "@babel/types": "^7.0.0",
- "convert-source-map": "^1.1.0",
- "debug": "^3.1.0",
- "json5": "^0.5.0",
- "lodash": "^4.17.10",
- "resolve": "^1.3.2",
- "semver": "^5.4.1",
- "source-map": "^0.5.0"
- },
- "dependencies": {
- "debug": {
- "version": "3.2.5",
- "resolved": "https://registry.npmjs.org/debug/-/debug-3.2.5.tgz",
- "integrity": "sha512-D61LaDQPQkxJ5AUM2mbSJRbPkNs/TmdmOeLAi1hgDkpDfIfetSrjmWhccwtuResSwMbACjx/xXQofvM9CE/aeg==",
- "dev": true,
- "requires": {
- "ms": "^2.1.1"
- }
- },
- "lodash": {
- "version": "4.17.11",
- "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.11.tgz",
- "integrity": "sha512-cQKh8igo5QUhZ7lg38DYWAxMvjSAKG0A8wGSVimP07SIUEK2UO+arSRKbRZWtelMtN5V0Hkwh5ryOto/SshYIg==",
- "dev": true
- },
- "ms": {
- "version": "2.1.1",
- "resolved": "https://registry.npmjs.org/ms/-/ms-2.1.1.tgz",
- "integrity": "sha512-tgp+dl5cGk28utYktBsrFqA7HKgrhgPsg6Z/EfhWI4gl1Hwq8B/GmY/0oXZ6nF8hDVesS/FpnYaD/kOWhYQvyg==",
- "dev": true
- }
- }
- },
- "@babel/generator": {
- "version": "7.0.0",
- "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.0.0.tgz",
- "integrity": "sha512-/BM2vupkpbZXq22l1ALO7MqXJZH2k8bKVv8Y+pABFnzWdztDB/ZLveP5At21vLz5c2YtSE6p7j2FZEsqafMz5Q==",
- "dev": true,
- "requires": {
- "@babel/types": "^7.0.0",
- "jsesc": "^2.5.1",
- "lodash": "^4.17.10",
- "source-map": "^0.5.0",
- "trim-right": "^1.0.1"
- },
- "dependencies": {
- "jsesc": {
- "version": "2.5.1",
- "resolved": "https://registry.npmjs.org/jsesc/-/jsesc-2.5.1.tgz",
- "integrity": "sha1-5CGiqOINawgZ3yiQj3glJrlt0f4=",
- "dev": true
- },
- "lodash": {
- "version": "4.17.11",
- "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.11.tgz",
- "integrity": "sha512-cQKh8igo5QUhZ7lg38DYWAxMvjSAKG0A8wGSVimP07SIUEK2UO+arSRKbRZWtelMtN5V0Hkwh5ryOto/SshYIg==",
- "dev": true
- }
- }
- },
- "@babel/helper-annotate-as-pure": {
- "version": "7.0.0",
- "resolved": "https://registry.npmjs.org/@babel/helper-annotate-as-pure/-/helper-annotate-as-pure-7.0.0.tgz",
- "integrity": "sha512-3UYcJUj9kvSLbLbUIfQTqzcy5VX7GRZ/CCDrnOaZorFFM01aXp1+GJwuFGV4NDDoAS+mOUyHcO6UD/RfqOks3Q==",
- "dev": true,
- "requires": {
- "@babel/types": "^7.0.0"
- }
- },
- "@babel/helper-builder-binary-assignment-operator-visitor": {
- "version": "7.1.0",
- "resolved": "https://registry.npmjs.org/@babel/helper-builder-binary-assignment-operator-visitor/-/helper-builder-binary-assignment-operator-visitor-7.1.0.tgz",
- "integrity": "sha512-qNSR4jrmJ8M1VMM9tibvyRAHXQs2PmaksQF7c1CGJNipfe3D8p+wgNwgso/P2A2r2mdgBWAXljNWR0QRZAMW8w==",
- "dev": true,
- "requires": {
- "@babel/helper-explode-assignable-expression": "^7.1.0",
- "@babel/types": "^7.0.0"
- }
- },
- "@babel/helper-builder-react-jsx": {
- "version": "7.0.0",
- "resolved": "https://registry.npmjs.org/@babel/helper-builder-react-jsx/-/helper-builder-react-jsx-7.0.0.tgz",
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- "dev": true,
- "requires": {
- "@babel/types": "^7.0.0",
- "esutils": "^2.0.0"
- }
- },
- "@babel/helper-call-delegate": {
- "version": "7.1.0",
- "resolved": "https://registry.npmjs.org/@babel/helper-call-delegate/-/helper-call-delegate-7.1.0.tgz",
- "integrity": "sha512-YEtYZrw3GUK6emQHKthltKNZwszBcHK58Ygcis+gVUrF4/FmTVr5CCqQNSfmvg2y+YDEANyYoaLz/SHsnusCwQ==",
- "dev": true,
- "requires": {
- "@babel/helper-hoist-variables": "^7.0.0",
- "@babel/traverse": "^7.1.0",
- "@babel/types": "^7.0.0"
- }
- },
- "@babel/helper-define-map": {
- "version": "7.1.0",
- "resolved": "https://registry.npmjs.org/@babel/helper-define-map/-/helper-define-map-7.1.0.tgz",
- "integrity": "sha512-yPPcW8dc3gZLN+U1mhYV91QU3n5uTbx7DUdf8NnPbjS0RMwBuHi9Xt2MUgppmNz7CJxTBWsGczTiEp1CSOTPRg==",
- "dev": true,
- "requires": {
- "@babel/helper-function-name": "^7.1.0",
- "@babel/types": "^7.0.0",
- "lodash": "^4.17.10"
- },
- "dependencies": {
- "lodash": {
- "version": "4.17.11",
- "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.11.tgz",
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- "dev": true
- }
- }
- },
- "@babel/helper-explode-assignable-expression": {
- "version": "7.1.0",
- "resolved": "https://registry.npmjs.org/@babel/helper-explode-assignable-expression/-/helper-explode-assignable-expression-7.1.0.tgz",
- "integrity": "sha512-NRQpfHrJ1msCHtKjbzs9YcMmJZOg6mQMmGRB+hbamEdG5PNpaSm95275VD92DvJKuyl0s2sFiDmMZ+EnnvufqA==",
- "dev": true,
- "requires": {
- "@babel/traverse": "^7.1.0",
- "@babel/types": "^7.0.0"
- }
- },
- "@babel/helper-function-name": {
- "version": "7.1.0",
- "resolved": "https://registry.npmjs.org/@babel/helper-function-name/-/helper-function-name-7.1.0.tgz",
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- "dev": true,
- "requires": {
- "@babel/helper-get-function-arity": "^7.0.0",
- "@babel/template": "^7.1.0",
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- }
- },
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- "dev": true,
- "requires": {
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- "dev": true,
- "requires": {
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- },
- "@babel/helper-member-expression-to-functions": {
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- "resolved": "https://registry.npmjs.org/@babel/helper-member-expression-to-functions/-/helper-member-expression-to-functions-7.0.0.tgz",
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- "dev": true,
- "requires": {
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- "dev": true,
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- "@babel/helper-simple-access": "^7.1.0",
- "@babel/helper-split-export-declaration": "^7.0.0",
- "@babel/template": "^7.1.0",
- "@babel/types": "^7.0.0",
- "lodash": "^4.17.10"
- },
- "dependencies": {
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- "dev": true
- }
- }
- },
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- "integrity": "sha1-X8A4KOJkzqP+kUVUdvejxWbLB1c=",
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- "safe-buffer": "~5.1.0",
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- "sax": ">=0.6.0",
- "xmlbuilder": "~9.0.1"
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- "dev": true,
- "requires": {
- "camelcase": "^4.1.0"
- },
- "dependencies": {
- "camelcase": {
- "version": "4.1.0",
- "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-4.1.0.tgz",
- "integrity": "sha1-1UVjW+HjPFQmScaRc+Xeas+uNN0=",
- "dev": true
- }
- }
- },
- "yeast": {
- "version": "0.1.2",
- "resolved": "https://registry.npmjs.org/yeast/-/yeast-0.1.2.tgz",
- "integrity": "sha1-AI4G2AlDIMNy28L47XagymyKxBk=",
- "dev": true
- }
- }
-}
diff --git a/conda/js/package.json b/conda/js/package.json
deleted file mode 100644
index 402eaceca777db3099e157c589bebcb3a4a97a10..0000000000000000000000000000000000000000
--- a/conda/js/package.json
+++ /dev/null
@@ -1,103 +0,0 @@
-{
- "name": "beat.editor",
- "version": "0.0.0",
- "description": "A local editor for BEAT objects, including a graphical toolchain editor and a simple web server.",
- "main": "index.js",
- "scripts": {
- "start": "cross-env NODE_ENV=debug webpack-dev-server --hot",
- "prebuild": "rimraf ../../beat/editor/js",
- "build": "cross-env NODE_ENV=production webpack",
- "test-start": "cross-env BABEL_ENV=test NODE_ENV=test karma start --no-single-run",
- "test": "cross-env BABEL_ENV=test NODE_ENV=test karma start",
- "lint": "eslint --ext .js,.jsx src && eslint test && stylelint 'src/**/*.jsx, src/**/*.css, src/**/*.html' && npm run flow",
- "lint:fix": "eslint --ext .js,.jsx src --fix && eslint test --fix",
- "flow": "flow",
- "prepush": "npm test"
- },
- "browserslist": [
- "last 2 Chrome versions",
- "last 2 Firefox versions",
- "last 1 Safari versions"
- ],
- "author": "",
- "license": "MIT",
- "devDependencies": {
- "@babel/core": "^7.1.0",
- "@babel/plugin-proposal-class-properties": "^7.1.0",
- "@babel/plugin-proposal-object-rest-spread": "^7.0.0",
- "@babel/plugin-syntax-flow": "^7.0.0",
- "@babel/preset-env": "^7.1.0",
- "@babel/preset-flow": "^7.0.0",
- "@babel/preset-react": "^7.0.0",
- "babel-eslint": "^9.0.0",
- "babel-loader": "^8.0.2",
- "chai": "^4.1.2",
- "chai-enzyme": "^1.0.0-beta.1",
- "cross-env": "^5.2.0",
- "css-loader": "^1.0.0",
- "deep-equal-in-any-order": "^1.0.10",
- "enzyme": "^3.6.0",
- "enzyme-adapter-react-16": "^1.5.0",
- "eslint": "^5.6.0",
- "eslint-plugin-compat": "^2.5.1",
- "eslint-plugin-flowtype": "^2.50.1",
- "eslint-plugin-import": "^2.14.0",
- "eslint-plugin-react": "^7.11.1",
- "flow-bin": "^0.81.0",
- "html-webpack-plugin": "^3.2.0",
- "husky": "^0.14.3",
- "karma": "^3.0.0",
- "karma-chrome-launcher": "^2.2.0",
- "karma-coverage": "^1.1.2",
- "karma-firefox-launcher": "^1.1.0",
- "karma-mocha": "^1.3.0",
- "karma-mocha-reporter": "^2.2.5",
- "karma-sourcemap-loader": "^0.3.7",
- "karma-webpack": "^3.0.5",
- "mocha": "^5.2.0",
- "postcss": "^7.0.2",
- "postcss-cli": "^6.0.0",
- "postcss-cssnext": "^3.1.0",
- "postcss-loader": "^3.0.0",
- "postcss-smart-import": "^0.7.6",
- "react-hot-loader": "^4.3.8",
- "react-popper": "^1.0.2",
- "react-test-renderer": "^16.5.2",
- "redux-devtools": "^3.4.1",
- "rimraf": "^2.6.2",
- "selenium-webdriver": "^4.0.0-alpha.1",
- "sinon": "^6.3.4",
- "style-loader": "^0.23.0",
- "stylelint": "^9.5.0",
- "stylelint-config-standard": "^18.2.0",
- "svg-inline-loader": "^0.8.0",
- "tern-jsx": "^1.0.3",
- "terser-webpack-plugin": "^1.1.0",
- "webpack": "^4.19.1",
- "webpack-cli": "^3.1.0",
- "webpack-dev-server": "^3.1.8",
- "webpack-visualizer-plugin": "^0.1.11",
- "worker-loader": "^2.0.0"
- },
- "dependencies": {
- "ajv": "^6.5.3",
- "bootstrap": "^4.1.3",
- "classnames": "^2.2.6",
- "d3": "^5.7.0",
- "fast-copy": "^1.2.2",
- "fast-levenshtein": "^2.0.6",
- "fuse.js": "^3.2.1",
- "prop-types": "^15.6.2",
- "react": "^16.5.2",
- "react-contextmenu": "^2.9.3",
- "react-dom": "^16.5.2",
- "react-redux": "^5.0.7",
- "react-router-dom": "^4.3.1",
- "react-transition-group": "^2.4.0",
- "reactstrap": "^6.4.0",
- "redux": "^4.0.0",
- "redux-thunk": "^2.3.0",
- "reselect": "^3.0.1",
- "throttle-debounce": "^2.0.1"
- }
-}
diff --git a/conda/js/src/components/App.jsx b/conda/js/src/components/App.jsx
deleted file mode 100644
index 2c6805b6ead87e627d19f6def8140bf08a47db0a..0000000000000000000000000000000000000000
--- a/conda/js/src/components/App.jsx
+++ /dev/null
@@ -1,48 +0,0 @@
-// @flow
-import React from 'react';
-import {
- Container,
- Row,
- Col,
-} from 'reactstrap';
-
-import {
- HashRouter as Router,
- Route,
- Switch,
-} from 'react-router-dom';
-import { hot } from 'react-hot-loader';
-
-import MainNav from './MainNav.jsx';
-import MainContent from './MainContent.jsx';
-import HomeContent from './HomeContent.jsx';
-
-type Props = {
-};
-
-type State = {
-};
-
-class App extends React.PureComponent<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- render () {
- return (
- <Router>
- <Container>
- <Route component={MainNav} />
- <Switch>
- <Route path='/:entity' component={MainContent} />
- <Route>
- <HomeContent />
- </Route>
- </Switch>
- </Container>
- </Router>
- );
- }
-}
-
-export default hot(module)(App);
diff --git a/conda/js/src/components/CacheInput.jsx b/conda/js/src/components/CacheInput.jsx
deleted file mode 100644
index 265c161ae79c524058956467174cb289ebff7f3a..0000000000000000000000000000000000000000
--- a/conda/js/src/components/CacheInput.jsx
+++ /dev/null
@@ -1,198 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Input,
- Alert,
- InputGroup,
- InputGroupAddon,
- UncontrolledTooltip,
- Tooltip,
-} from 'reactstrap';
-
-import { rxField } from '@helpers/beat';
-
-type Props = {
- // consumer-supplied func for validating input
- // if the func finds the input isnt valid, it should return a react.node of text for the error message
- validateFunc?: (string) => (true | React.Node),
- // if the current input in the CacheInput instance is valid, this func will be called with that value
- onChange: (any) => any,
- // the current value for this cacheinput
- value: string,
- // for edge cases
- children?: React.Node,
- // many fields in the beat editor are restricted to a certain "slugified" format
- // if this cacheinput needs that, use this flag
- fieldTest?: boolean,
- // update delay in ms, defaults to 500
- // basically just simple throttling to keep from overwhelming complex updates in the parent
- delay?: number,
- // danger color highlight
- invalid?: boolean,
-};
-
-type State = {
- // the current string in the CacheInput input field,
- // which may or may not be valid
- cache: string,
- // whether the cache is valid
- valid: boolean,
- // a text-like react node that represents an error message
- invalidityText?: React.Node,
- // the delay to use (default 500)
- msDelay: number,
-};
-
-// test for the "fieldTest" flag, with a nice error message
-const fieldTestResults = (input: string): true | React.Node => {
- return (rxField.test(input) ||
- <span>
- The field name must be at least one character and consisting of only of alphanumeric ASCII characters, `_`, and `-`.
- </span>
- );
-};
-
-// top-level validity func with some edgecase checking
-// validateFunc arg lets you also check using a user-defined validate func
-const isValid = (input: string, currVal: string, validateFunc: (string) => true | React.Node, fieldTest: boolean): true | React.Node => {
- if(input === currVal)
- return true;
-
- if(fieldTest){
- const res = fieldTestResults(input);
- if(res !== true)
- return res;
- }
-
- const funcRes = validateFunc(input);
-
- return funcRes;
-};
-
-// Provides a bootstrap-styled wrapper around <input /> that caches the raw user input until a valid input is provided.
-// Also throttles the onChange event to prevent many parent state updates in a short time
-class CacheInput extends React.Component<Props, State>{
- constructor(props: Props){
- super(props);
- }
-
- state = {
- cache: this.props.value,
- valid: false,
- invalidityText: undefined,
- // default of 500ms delay
- msDelay: this.props.delay !== undefined ? this.props.delay : 500,
- };
-
- // check validation as soon as it mounts
- componentDidMount () {
- this.updateValidity(this.state.cache);
- }
-
- // if the parent's model (the props) changes, reset input
- componentDidUpdate = (prevProps: Props) => {
- if(this.props.value !== prevProps.value){
- this.setState({
- cache: (this.props.value),
- });
- this.clearTimer();
- }
- }
-
- // gets the validity info of an input string given a curr val
- updateValidity = (input: string, currVal?: string = this.props.value) => {
- const func = this.props.validateFunc || (() => true);
- const validRes = isValid(input, currVal, func, this.props.fieldTest || false);
- this.setState({
- valid: validRes === true,
- invalidityText: validRes !== true ? validRes : undefined
- });
-
- return validRes === true;
- }
-
- // the user can pass any props they want onto the inner <Input /> element
- // some props shouldn't be passed though
- getInputProps = () => {
- const inputProps = { ...this.props };
- delete inputProps['validateFunc'];
- delete inputProps['children'];
- delete inputProps['fieldTest'];
- delete inputProps['delay'];
- return inputProps;
- }
-
- // throttle timer ref
- onChangeTimer = null;
- // clears the throttle timer
- clearTimer = () => {
- if(this.onChangeTimer)
- clearTimeout(this.onChangeTimer);
- }
-
- // called whenever the user changes the raw input with the raw input event
- // for perf reasons it really focuses on returning when possible
- change = (e: any) => {
- this.clearTimer();
- const newInput = e.target.value;
- // no need to update the state if the value is the same
- if(newInput === this.state.cache)
- return;
- const newValid = this.updateValidity(newInput);
- this.setState({
- cache: newInput,
- });
- // no need to update props if value is the same
- if(newInput === this.props.value)
- return;
- if(newValid && this.props.onChange){
- if(this.state.msDelay === 0){
- this.props.onChange(e);
- } else {
- // by default in react events have a "persist" method
- // that lets you keep it around for a bit longer than normal
- // in testing environments the event persists by default
- if(e.persist)
- e.persist();
- this.onChangeTimer = setTimeout(() => {
- this.props.onChange(e);
- }, this.state.msDelay);
- }
- }
- }
-
- // the Tooltips are annoying in test environments and need a react ref
- target = null
-
- render () {
- // either if invalid or if the consuming component set it
- const dangerColor = !this.state.valid || this.props.invalid;
- return (
- <InputGroup>
- { this.props.children }
- <Input
- type='text'
- {...this.getInputProps()}
- value={this.state.cache}
- onChange={this.change}
- valid={!dangerColor}
- invalid={dangerColor}
- />
- { !this.state.valid &&
- <div ref={target => {this.target = target;}} className='input-group-append'>
- <span className='input-group-text'>
- <strong className='text-danger'>!</strong>
- </span>
- </div>
- }
- { !this.state.valid &&
- <UncontrolledTooltip target={() => this.target}>
- { this.state.invalidityText }
- </UncontrolledTooltip>
- }
- </InputGroup>
- );
- }
-}
-
-export default CacheInput;
diff --git a/conda/js/src/components/CacheInput.spec.jsx b/conda/js/src/components/CacheInput.spec.jsx
deleted file mode 100644
index 6e0d055d6cabb38599041a0df4ceb5797ed4e86d..0000000000000000000000000000000000000000
--- a/conda/js/src/components/CacheInput.spec.jsx
+++ /dev/null
@@ -1,63 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import C from './CacheInput.jsx';
-
-describe('<CacheInput />', () => {
- let wrapper;
- const validateFunc = sinon.spy();
- const onChange = sinon.spy();
- const fieldTest = true;
- const children = <span>child</span>;
- const value = 'value';
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- it(`has 2 required props`, () => {
- wrapper = mount(
- <C
- onChange={onChange}
- value={value}
- />
- );
-
- expect(wrapper).to.have.props(
- ['onChange', 'value']
- ).deep.equal(
- [onChange, value]
- );
-
- expect(wrapper).to.not.have.props(
- ['validateFunc', 'fieldTest', 'children']
- );
- });
-
- it(`can take up to 5 props`, () => {
- const validateFunc = sinon.spy();
- const onChange = sinon.spy();
- const fieldTest = true;
- const children = <span>child</span>;
- const value = 'value';
- wrapper = mount(
- <C
- validateFunc={validateFunc}
- onChange={onChange}
- fieldTest={fieldTest}
- value={value}
- >{ children }</C>
- );
-
- expect(wrapper).to.have.props(
- ['validateFunc', 'onChange', 'fieldTest', 'value', 'children']
- ).deep.equal(
- [validateFunc, onChange, fieldTest, value, children]
- );
- });
-});
diff --git a/conda/js/src/components/DeleteInputBtn.jsx b/conda/js/src/components/DeleteInputBtn.jsx
deleted file mode 100644
index bec3cd7ece45c1e31808f2c3f4eb0854c3d1c67c..0000000000000000000000000000000000000000
--- a/conda/js/src/components/DeleteInputBtn.jsx
+++ /dev/null
@@ -1,25 +0,0 @@
-//@flow
-import * as React from 'react';
-import {
- InputGroupAddon,
- Button,
-} from 'reactstrap';
-
-type Props = {
- deleteFunc: (any) => any,
-}
-
-// super simple wrapper for a button that attaches to an input
-// styled like a Delete button
-const DeleteInputBtn = ({ deleteFunc }: Props) => (
- <InputGroupAddon addonType='prepend'>
- <Button
- color='danger'
- onClick={(e) => deleteFunc(e)}
- >
- X
- </Button>
- </InputGroupAddon>
-);
-
-export default DeleteInputBtn;
diff --git a/conda/js/src/components/DeleteInputBtn.spec.jsx b/conda/js/src/components/DeleteInputBtn.spec.jsx
deleted file mode 100644
index 371aa2bd539e6bda876d79e3427658b2c43795b1..0000000000000000000000000000000000000000
--- a/conda/js/src/components/DeleteInputBtn.spec.jsx
+++ /dev/null
@@ -1,29 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '../../test';
-
-import C from './DeleteInputBtn.jsx';
-
-describe('<DeleteInputBtn />', () => {
- let wrapper;
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- it('takes a "deleteFunc" prop', () => {
- const deleteFunc = sinon.spy();
- wrapper = mount(<C deleteFunc={deleteFunc} />);
- expect(wrapper).to.have.prop('deleteFunc', deleteFunc);
- });
-
- it('calls the deleteFunc when clicked', () => {
- const deleteFunc = sinon.spy();
- wrapper = mount(<C deleteFunc={deleteFunc} />);
- wrapper.find('button').simulate('click');
- expect(deleteFunc.calledOnce).to.equal(true);
- });
-});
diff --git a/conda/js/src/components/EntityDetail.jsx b/conda/js/src/components/EntityDetail.jsx
deleted file mode 100644
index 5a00148cbe2726849364b78c0323b3bf825f50b1..0000000000000000000000000000000000000000
--- a/conda/js/src/components/EntityDetail.jsx
+++ /dev/null
@@ -1,247 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- TabContent,
- TabPane,
- Nav,
- NavItem,
- NavLink,
- Input,
- InputGroupAddon,
- InputGroup,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import cn from 'classnames';
-
-import * as Actions from '@store/actions.js';
-import * as Selectors from '@store/selectors.js';
-
-import {
- Route,
- Link
-} from 'react-router-dom';
-
-import type { BeatObject, BeatEntity } from '@helpers/beat';
-import { getDefaultEntityObject, pluralize } from '@helpers/beat';
-import { genModuleApiFuncs } from '@helpers/api';
-import ValidSchemaBadge from './ValidSchemaBadge.jsx';
-
-import DataformatEditorContainer from './dataformat';
-import AlgorithmEditorContainer from './algorithm';
-import LibraryEditorContainer from './library';
-import DatabaseEditorContainer from './database';
-import ExperimentEditorContainer from './experiment';
-import ToolchainEditorContainer from './toolchain';
-import PlotterEditorContainer from './plotter';
-import PlotterparameterEditorContainer from './plotterparameter';
-
-type Props = {
- // the match object from react-router
- // used to find which object to render
- match: any,
- // the history object from react-router
- // used to push new history to
- history: any,
- // gets the object based on the current URL
- getEntityObject: () => BeatObject,
- // gets the object's index # in the Redux array based on the current URL
- getEntityIndex: () => number,
- // updates the current object
- updateFunc: (BeatObject) => any,
- // the current BEAT entity being show
- entity: BeatEntity,
- // the absolute path to the user's prefix folder
- prefix: string,
-};
-
-// 3 tabs so far: editor, docs, raw json
-type Tab = '0' | '1' | '2';
-
-type State = {
- // which tab is active
- activeTab: Tab,
-};
-
-// wrapper for editors
-// doesnt really do much now besides the raw json tab
-export class EntityDetail extends React.Component<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- state = {
- activeTab: '0',
- }
-
- switchToTab = (tab: Tab) => {
- this.setState({
- activeTab: tab
- });
- }
-
- saveChanges = (newObj: BeatObject) => {
- this.props.updateFunc(newObj);
- const put = genModuleApiFuncs(this.props.entity).put;
- return put([newObj]);
- }
-
- render () {
- const name = this.props.match.params.name;
- const obj = this.props.getEntityObject();
- const index = this.props.getEntityIndex();
- let expName;
- if(this.props.entity === 'experiment'){
- const segs = name.split('/');
- const usern = segs.shift();
- const expn = segs.pop();
- const tcn = segs.join('/');
- expName = <span>{ usern }/<Link to={`/toolchain/${ tcn }`}>{ tcn }</Link>/{ expn }</span>
- }
- return (
- <Container>
- <Row className='mb-1'>
- <Col>
- {/* title line (name & validation info) */}
- <h4 className='text-center'>
- <span style={{'textTransform': 'capitalize'}}>
- { this.props.entity }
- </span>
- {' '}
- <pre style={{display: 'inline'}}>
- { expName || name }
- </pre>
- <ValidSchemaBadge entity={this.props.entity} obj={obj} />
- </h4>
- {/* path line */}
- <InputGroup>
- <InputGroupAddon addonType='prepend'>Path:</InputGroupAddon>
- <Input
- readOnly
- width='80'
- value={`${ this.props.prefix }/${ pluralize(this.props.entity) }/${ name }`}
- />
- </InputGroup>
- </Col>
- </Row>
- <Row>
- <Col sm='12'>
- <Nav tabs className='nav-fill'>
- <NavItem>
- <NavLink
- className={cn({ active: this.state.activeTab === '0' })}
- onClick={() => this.switchToTab('0')}
- >
- Editor
- </NavLink>
- </NavItem>
- <NavItem>
- <NavLink
- className={cn({ active: this.state.activeTab === '1' })}
- onClick={() => this.switchToTab('1')}
- >
- Raw JSON
- </NavLink>
- </NavItem>
- </Nav>
- <TabContent activeTab={this.state.activeTab} className='mt-2'>
- {/* Uses the appropriate editor, could probably be done nicer */}
- <TabPane tabId='0'>
- {
- this.props.entity === 'algorithm' &&
- <AlgorithmEditorContainer
- saveFunc={this.saveChanges}
- index={index}
- />
- }
- {
- this.props.entity === 'dataformat' &&
- <DataformatEditorContainer
- saveFunc={this.saveChanges}
- index={index}
- />
- }
- {
- this.props.entity === 'library' &&
- <LibraryEditorContainer
- saveFunc={this.saveChanges}
- index={index}
- />
- }
- {
- this.props.entity === 'database' &&
- <DatabaseEditorContainer
- saveFunc={this.saveChanges}
- index={index}
- />
- }
- {
- this.props.entity === 'experiment' &&
- <ExperimentEditorContainer
- saveFunc={this.saveChanges}
- index={index}
- />
- }
- {
- this.props.entity === 'toolchain' &&
- <ToolchainEditorContainer
- saveFunc={this.saveChanges}
- index={index}
- />
- }
- {
- this.props.entity === 'plotter' &&
- <PlotterEditorContainer
- saveFunc={this.saveChanges}
- index={index}
- />
- }
- {
- this.props.entity === 'plotterparameter' &&
- <PlotterparameterEditorContainer
- saveFunc={this.saveChanges}
- index={index}
- />
- }
- </TabPane>
- <TabPane tabId='1'>
- <pre>{ JSON.stringify(obj, null, 4) }</pre>
- </TabPane>
- </TabContent>
- </Col>
- </Row>
- </Container>
- );
- }
-}
-
-const mapStateToProps = (state, ownProps) => {
- // which beat entity is currently active: 'algorithm', 'plotter', 'database', etc.
- const entity = ownProps.match.params.entity;
- // the name of the object ("atnt/1", "plot/isoroc/1", "user/tc/test/1/exp", etc.)
- const name = ownProps.match.params.name;
- const obj = {
- // uses a selector based off the entity and finds the obj given the name
- // if the obj doesnt exist (huge edge case) just return a default obj to not break everything
- getEntityObject: (): BeatObject => Selectors[`${ entity }Get`](state).find(o => o.name === name) || getDefaultEntityObject(),
- getEntityIndex: (): number => Selectors[`${ entity }Get`](state).findIndex(o => o.name === name),
- entity,
- prefix: Selectors.settingsGet(state).prefix,
- };
-
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- dispatch(Actions[`${ ownProps.match.params.entity }Update`](ownProps.match.params.name, obj));
- ownProps.history.push(`/${ ownProps.match.params.entity }/${ obj.name }`);
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(EntityDetail);
diff --git a/conda/js/src/components/EntityHome.jsx b/conda/js/src/components/EntityHome.jsx
deleted file mode 100644
index 49d8f97c0ce8bcb2e7e9314116764a5bbdc49fc4..0000000000000000000000000000000000000000
--- a/conda/js/src/components/EntityHome.jsx
+++ /dev/null
@@ -1,85 +0,0 @@
-// @flow
-import React from 'react';
-import {
- Container,
- Row,
- Col,
- ListGroup,
- ListGroupItem,
- Button,
- ButtonGroup,
- Card,
- CardHeader,
- CardBody,
-} from 'reactstrap';
-
-import {
- Switch,
- Route,
-} from 'react-router-dom';
-
-import type { BeatEntity } from '@helpers/beat.js';
-import { pluralize } from '@helpers/beat.js';
-
-import EntityListContainer from './EntityList.jsx';
-import NewEntityModal from './NewEntityModal.jsx';
-import EntityDetailContainer from './EntityDetail.jsx';
-import SearchBar from './SearchBar.jsx';
-
-type Props = {
- entity: BeatEntity,
-};
-
-type State = {
- newOpen: boolean,
-};
-
-class EntityHome extends React.Component<Props, State> {
- constructor(props: Props) {
- super(props);
- }
-
- state = {
- newOpen: false,
- }
-
- toggleNew = () => this.setState({ newOpen: !this.state.newOpen });
-
- render () {
- return (
- <Switch>
- <Route exact path={'/:entity/:name+'} component={EntityDetailContainer} />
- <Route>
- <Container>
- <Row className='mb-3'>
- <Col>
- <div className='d-flex'>
- <h3>{ pluralize(this.props.entity) }</h3>
- <SearchBar
- entity={this.props.entity}
- />
- <div className='ml-auto'>
- <Button outline color='success' onClick={this.toggleNew}>New</Button>
- <NewEntityModal
- toggle={this.toggleNew}
- isOpen={this.state.newOpen}
- entity={this.props.entity}
- nameOrVersion={true}
- />
- </div>
- </div>
- </Col>
- </Row>
- <Row>
- <Col>
- <EntityListContainer entity={this.props.entity} />
- </Col>
- </Row>
- </Container>
- </Route>
- </Switch>
- );
- }
-}
-
-export default EntityHome;
diff --git a/conda/js/src/components/EntityList.jsx b/conda/js/src/components/EntityList.jsx
deleted file mode 100644
index f804d3c3876c53868d77d7f4c4771c51e97e7459..0000000000000000000000000000000000000000
--- a/conda/js/src/components/EntityList.jsx
+++ /dev/null
@@ -1,208 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- ListGroup,
- ListGroupItem,
- Button,
- ButtonGroup,
- Card,
- CardHeader,
- CardBody,
- Badge,
- Modal, ModalHeader, ModalBody, ModalFooter,
-} from 'reactstrap';
-
-import {
- Route,
- Link
-} from 'react-router-dom';
-
-import { connect } from 'react-redux';
-
-import * as Selectors from '@store/selectors';
-import * as Actions from '@store/actions';
-
-import { BEAT_ENTITIES, getTcFromExpName } from '@helpers/beat';
-import type { BeatEntity, BeatObject } from '@helpers/beat';
-
-import ValidSchemaBadge from './ValidSchemaBadge.jsx';
-
-import NewEntityModal from './NewEntityModal.jsx';
-
-type ElProps = {
- data: BeatObject,
- entity: BeatEntity,
- copyFunc: () => any,
- deleteFunc: () => any,
- versionFunc?: () => any,
-};
-
-const El = ({ data, entity, copyFunc, deleteFunc, versionFunc }: ElProps) => (
- <ListGroupItem className='d-flex align-items-center'>
- <span>
- <Link to={`/${ entity }/${ data.name }`}>
- { data.name }
- </Link>
- <ValidSchemaBadge entity={entity} obj={data} />
- <small> { data.contents['description'] || data.contents['#description'] }</small>
- </span>
-
- <div className='ml-auto'>
- { versionFunc && <Button outline color='success' onClick={() => versionFunc()}>New Version</Button> }{' '}
- <Button outline color='success' onClick={() => copyFunc()}>Clone</Button>{' '}
- <Button outline color='danger' onClick={() => deleteFunc()}>Delete</Button>
- </div>
- </ListGroupItem>
-);
-
-type Props = {
- entity: BeatEntity,
- data: BeatObject[],
- // deleting toolchains should show the exps that will be deleted in the popup
- experiments: BeatObject[],
- deleteFunc: (BeatObject, ?BeatEntity) => () => any,
-};
-
-type State = {
- newModalOpen: boolean,
- copyObj: {},
- deleteModalData: false | BeatObject,
- nameOrVersion: boolean,
-};
-
-export class EntityList extends React.Component<Props, State> {
- constructor (props: Props) {
- super(props);
- }
-
- state = {
- newModalOpen: false,
- copyObj: {},
- deleteModalData: false,
- nameOrVersion: false,
- }
-
- toggleDeleteModal = (e: false | BeatObject = false) => this.setState({ deleteModalData: e || false });
-
- toggleModal = () => this.setState({ newModalOpen: !this.state.newModalOpen });
-
- copyFunc = (obj: BeatObject) => this.setState({ copyObj: obj, newModalOpen: true, nameOrVersion: true });
-
- versionFunc = (obj: BeatObject) => this.setState({ copyObj: obj, newModalOpen: true, nameOrVersion: false });
-
- render () {
- // name to be deleted if any
- const deleteName = this.state.deleteModalData ? this.state.deleteModalData.name : '';
-
- // need to find which objects can be versioned (which objects have no newer versions)
- let versionableNames;
- if(this.props.entity === 'experiment')
- versionableNames = [];
- else {
- const getNameAndVersion = name => {
- const segs = name.split('/');
- const n = segs.slice(0, -1).join('/');
- const version = Number.parseInt(segs[segs.length - 1]);
- return [n, version];
- };
- // sort the names so that all versions of an object are together,
- // and the versions are sorted from first to laste
- const sortedNames = this.props.data.map(d => d.name).sort();
- const nameAndVersions = sortedNames.map(n => getNameAndVersion(n));
- // find the complete names of the highest versions of each obj
- // since we sorted we just find the last version of each obj
- versionableNames = sortedNames.filter((n, i) => {
- if(i === sortedNames.length - 1)
- return true;
- if(nameAndVersions[i + 1][0] === nameAndVersions[i][0])
- return false;
- return true;
- });
- }
-
- return (
- <React.Fragment>
- <ListGroup>
- <NewEntityModal
- toggle={this.toggleModal}
- isOpen={this.state.newModalOpen}
- entity={this.props.entity}
- copyObj={this.state.copyObj}
- nameOrVersion={this.state.nameOrVersion}
- />
- { this.props.data.map((d, i) =>
- <El
- key={i}
- data={d}
- entity={this.props.entity}
- copyFunc={() => this.copyFunc(d)}
- versionFunc={versionableNames.includes(d.name) ? () => this.versionFunc(d) : undefined}
- deleteFunc={() => this.toggleDeleteModal(d)}
- />)
- }
- </ListGroup>
- <Modal
- toggle={() => this.toggleDeleteModal()}
- isOpen={this.state.deleteModalData !== false}
- >
- <ModalHeader toggle={() => this.toggleDeleteModal()}>Confirm Deletion</ModalHeader>
- <ModalBody>
- Are you sure you want to permanently delete{' '}
- <pre className='preInline'>
- { deleteName }
- </pre>?
- This will delete the object from your BEAT prefix as well as the web app.
- {
- this.props.entity === 'toolchain' &&
- <React.Fragment>
- <p>Deleting this toolchain will also delete the following experiments that depend on it:</p>
- <ListGroup>
- {
- this.props.experiments
- .filter(e => getTcFromExpName(e.name) === deleteName)
- .map((e, i) => <ListGroupItem key={i}>{ e.name }</ListGroupItem>)
- }
- </ListGroup>
- </React.Fragment>
- }
- </ModalBody>
- <ModalFooter>
- <Button color='danger'
- onClick={async () => {
- if(this.state.deleteModalData){
- if(this.props.entity === 'toolchain'){
- await Promise.all(
- this.props.experiments
- .filter(e => getTcFromExpName(e.name) === deleteName)
- .map((e) => this.props.deleteFunc(e, 'experiment'))
- );
- }
- await this.props.deleteFunc(this.state.deleteModalData);
- }
- this.toggleDeleteModal();
- }}
- >Delete</Button>
- <Button color='secondary'
- autoFocus
- onClick={() => this.toggleDeleteModal()}
- >Cancel</Button>
- </ModalFooter>
- </Modal>
- </React.Fragment>
- );
- }
-}
-
-const mapStateToProps = (state, ownProps) => ({
- data: Selectors[`${ ownProps.entity }Get`](state),
- experiments: Selectors.experimentGet(state),
-});
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- deleteFunc: (obj, entity = ownProps.entity) => dispatch(Actions.deleteObject(entity, obj)()),
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(EntityList);
diff --git a/conda/js/src/components/EntityTemplateGenerationButton.jsx b/conda/js/src/components/EntityTemplateGenerationButton.jsx
deleted file mode 100644
index e74ae2e6032fd467897453e7e238518d11bdb49d..0000000000000000000000000000000000000000
--- a/conda/js/src/components/EntityTemplateGenerationButton.jsx
+++ /dev/null
@@ -1,139 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Button,
- Modal,
- ModalBody,
- ModalHeader,
- ModalFooter,
-} from 'reactstrap';
-import {
- generateDatabaseTemplate,
- generateAlgorithmTemplate,
- generateLibraryTemplate,
- generatePlotterTemplate,
-} from '@helpers/api';
-import { copyObj } from '@helpers';
-import type { BeatEntity, BeatObject } from '@helpers/beat';
-import { pluralize } from '@helpers/beat';
-
-type Props = {
- data: BeatObject,
- entity: BeatEntity,
-};
-
-type State = {
- infoOpen: boolean,
- confirmOpen: boolean,
-};
-
-export default class EntityTemplateGenerationButton extends React.Component<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- state = {
- infoOpen: false,
- confirmOpen: false,
- }
-
- toggleInfo = (val: boolean = !this.state.infoOpen) => {
- this.setState({ infoOpen: val });
- }
-
- toggleConfirm = (val: boolean = !this.state.confirmOpen) => {
- this.setState({ confirmOpen: val });
- }
-
- click = async (confirm: boolean) => {
- let uses;
- let res;
- switch(this.props.entity){
- case('database'):
- if(!this.props.data.contents.protocols)
- throw new Error(`Bad database object, no protocols field: ${ this.props.data.contents }`);
- // need to find all the views
- let views = Array.from(new Set(
- this.props.data.contents.protocols
- .map(p => p.sets.map(s => s.view))
- .reduce((a, vs) => [...a, ...vs], [])
- ));
- res = await generateDatabaseTemplate(this.props.data.name, confirm, views);
- break;
- case('algorithm'):
- // find if the alg has parameters
- // find the used libraries
- if(!this.props.data.contents.parameters)
- throw new Error(`Bad alg object, no params field: ${ this.props.data.contents }`);
- res = await generateAlgorithmTemplate(this.props.data.name, confirm, this.props.data.contents);
- break;
- case('library'):
- // find the used libraries
- uses = copyObj(this.props.data.contents.uses);
- res = await generateLibraryTemplate(this.props.data.name, confirm, uses);
- break;
- case('plotter'):
- // find the used libraries and parameters
- uses = copyObj(this.props.data.contents.parameters);
- res = await generatePlotterTemplate(this.props.data.name, confirm, this.props.data.contents);
- break;
- default:
- throw new Error(`Cannot generate template for entity "${ this.props.entity }"`);
- }
-
- // inspect the result
- if(res === false){
- // the python file already existed, ask for confirmation to overwrite
- this.toggleConfirm(true);
- } else {
- // its fine
- this.toggleInfo(true);
- }
- }
-
- render = () => {
- return (
- <React.Fragment>
- <Button outline
- color='danger'
- className='mx-auto'
- onClick={e => this.click(false)}
- title={`Some types of objects (databases, algorithms, and libraries) need Python files to be used in experiments. You may generate a template Python file to provide a starting point for development.`}
- >
- Generate Python File
- </Button>
- <br />
- <Modal color='info' isOpen={this.state.infoOpen} toggle={e => this.toggleInfo(false)}>
- <ModalHeader toggle={e => this.toggleInfo(false)}>
- Information about the template file
- </ModalHeader>
- <ModalBody>
- <p>
- You have generated a template Python file to provide a starting point for development for this object.
- </p>
- The template { this.props.entity } Python file for this object can be found in the path:
- <pre className='preInline'>
- /your/beat/prefix/{ pluralize(this.props.entity) }/{ this.props.data.name }.py
- </pre>
- </ModalBody>
- </Modal>
- <Modal color='info' isOpen={this.state.confirmOpen} toggle={e => this.toggleConfirm(false)}>
- <ModalHeader toggle={e => this.toggleConfirm(false)}>
- Confirm Overwrite
- </ModalHeader>
- <ModalBody>
- The generated Python file will overwrite the Python file that already exists at:
- <pre className='preInline'>
- /your/beat/prefix/{ pluralize(this.props.entity) }/{ this.props.data.name }.py
- </pre>
- Are you sure you want to overwrite this file?
- </ModalBody>
- <ModalFooter>
- <Button color="primary" onClick={e => { this.toggleConfirm(false); this.click(true); }}>Overwrite</Button>{' '}
- <Button color="secondary" onClick={e => this.toggleConfirm(false)}>Cancel</Button>
- </ModalFooter>
- </Modal>
- </React.Fragment>
- );
- }
-};
diff --git a/conda/js/src/components/HomeContent.jsx b/conda/js/src/components/HomeContent.jsx
deleted file mode 100644
index 7a846bebba038286997240992d692d087c356acb..0000000000000000000000000000000000000000
--- a/conda/js/src/components/HomeContent.jsx
+++ /dev/null
@@ -1,41 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
-} from 'reactstrap';
-
-const HomeContent = () => (
- <Container>
- <Row>
- <Col sm='12'>
- <p>
- Welcome to the BEAT editor!
- </p>
- <p>
- Please make sure your prefix is set to a path to a valid BEAT prefix (usually created by the {' '}<a href='https://gitlab.idiap.ch/beat/beat.cmdline'>BEAT cli</a>).
- </p>
- <h4>Platform overview</h4>
- <p>
- There are eight different primary entities within the BEAT platform:
- </p>
- <ul>
- <li>Databases</li>
- <li>Libraries</li>
- <li>Dataformats</li>
- <li>Algorithms</li>
- <li>Toolchains</li>
- <li>Experiments</li>
- <li>Plotters</li>
- <li>Plotterparameters</li>
- </ul>
- <p>
- This web app edits the metadata of objects of all seven of these entities, but does not support editing code or documentation (e.g. editing Python or RST files).
- </p>
- </Col>
- </Row>
- </Container>
-);
-
-export default HomeContent;
diff --git a/conda/js/src/components/InfoTooltip.jsx b/conda/js/src/components/InfoTooltip.jsx
deleted file mode 100644
index 36ba6805fd7627f7a8bc1fc9b8cd46a579c6f96e..0000000000000000000000000000000000000000
--- a/conda/js/src/components/InfoTooltip.jsx
+++ /dev/null
@@ -1,30 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- UncontrolledTooltip,
-} from 'reactstrap';
-
-type Props = {
- id: string,
- info: string,
- children: React.Node,
-};
-
-export class InfoTooltip extends React.PureComponent<Props> {
- constructor(props: Props) {
- super(props);
- }
-
- target = null
-
- render = () => (
- <React.Fragment>
- <span id={this.props.id} ref={el => this.target = el }>{ this.props.children }<sup>ℹ</sup></span>
- <UncontrolledTooltip target={() => this.target}>
- { this.props.info }
- </UncontrolledTooltip>
- </React.Fragment>
- );
-}
-
-export default InfoTooltip;
diff --git a/conda/js/src/components/MainContent.jsx b/conda/js/src/components/MainContent.jsx
deleted file mode 100644
index 0515988621225661a5ee51a943c563a575efaa78..0000000000000000000000000000000000000000
--- a/conda/js/src/components/MainContent.jsx
+++ /dev/null
@@ -1,27 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
-} from 'reactstrap';
-
-
-import {
- Route,
- Switch,
-} from 'react-router-dom';
-
-import EntityHome from './EntityHome.jsx';
-
-type Props = {
- match: any,
-};
-
-const MainContent = ({ match }: Props) => (
- <div>
- <EntityHome entity={match.params.entity} />
- </div>
-);
-
-export default MainContent;
diff --git a/conda/js/src/components/MainNav.jsx b/conda/js/src/components/MainNav.jsx
deleted file mode 100644
index ae70bbb397fd54ea4a4101bbb327afbf2dc66659..0000000000000000000000000000000000000000
--- a/conda/js/src/components/MainNav.jsx
+++ /dev/null
@@ -1,156 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Button,
- Navbar,
- NavbarBrand,
- Nav,
- NavItem,
- NavLink,
-} from 'reactstrap';
-
-import {
- Route,
- Link,
- NavLink as RLink,
-} from 'react-router-dom';
-
-import { connect } from 'react-redux';
-
-import * as Selectors from '@store/selectors';
-import { clearUnsaved } from '@store/actions';
-
-import { BEAT_ENTITIES, pluralize } from '@helpers/beat';
-import { genModuleApiFuncs } from '@helpers/api';
-import type { BeatEntity, BeatSettings } from '@helpers/beat';
-
-import Settings from './Settings.jsx';
-
-type Props = {
- database: BeatEntity[],
- library: BeatEntity[],
- dataformat: BeatEntity[],
- algorithm: BeatEntity[],
- toolchain: BeatEntity[],
- experiment: BeatEntity[],
- plotter: BeatEntity[],
- plotterparameter: BeatEntity[],
- settings: BeatSettings,
- unsavedChanges: boolean,
- clearUnsaved: () => any,
-};
-
-type State = {
- settingsOpen: boolean,
- isSaving: boolean,
-};
-
-const saveAll = async (allLists: Props) => {
- await Promise.all(
- BEAT_ENTITIES
- //.filter(e => Array.isArray(allLists[e]))
- .map(e => {
- const put = genModuleApiFuncs(e).put;
- return put(allLists[e]);
- })
- );
-};
-
-export class MainNav extends React.Component<Props, State> {
- constructor(props: Props) {
- super(props);
- }
-
- state = {
- settingsOpen: false,
- isSaving: false,
- }
-
- toggle = () => {
- this.setState({
- settingsOpen: !this.state.settingsOpen
- });
- }
-
- saveAllData = async () => {
- try {
- this.setState({
- isSaving: true
- });
- const res = await saveAll(this.props);
- this.setState({
- isSaving: false
- });
- this.props.clearUnsaved();
- } catch (e) {
-
- }
- }
-
- render() {
- return (
- <Navbar color="faded" light expand>
- <NavbarBrand href="/#/">beat.editor</NavbarBrand>
- <Nav className="mr-auto" navbar>
- {
- BEAT_ENTITIES
- .map((e, i) => {
- return (
- <NavItem key={i}>
- <NavLink tag={RLink} to={`/${ (e: any) }`}>{ pluralize(e) }</NavLink>
- </NavItem>
- );
- })
- }
- </Nav>
- <Nav className="ml-auto" navbar>
- {
- // right now we have no settings so there's no need to offer the user this modal
- /*
- <NavItem className='mr-1'>
- <Button outline onClick={this.toggle}>Settings</Button>
- <Settings
- isOpen={this.state.settingsOpen}
- toggle={this.toggle}
- />
- </NavItem>
- */
- }
- {
- // Dont need a 'save all' button anymore
- /*
- <NavItem>
- <Button outline color={this.props.unsavedChanges ? 'primary' : 'secondary'}
- disabled={this.state.isSaving}
- onClick={this.saveAllData}
- title={this.props.unsavedChanges ? 'There may be unsaved changes on the web app. Click to save changes.' : 'There are no changes detected.'}
- >
- Save All
- </Button>
- </NavItem>
- */
- }
- </Nav>
- </Navbar>
- );
- }
-}
-
-const mapStateToProps = state => ({
- database: Selectors.databaseGet(state),
- library: Selectors.libraryGet(state),
- dataformat: Selectors.dataformatGet(state),
- algorithm: Selectors.algorithmGet(state),
- toolchain: Selectors.toolchainGet(state),
- experiment: Selectors.experimentGet(state),
- plotter: Selectors.plotterGet(state),
- plotterparameter: Selectors.plotterparameterGet(state),
- settings: Selectors.settingsGet(state),
- unsavedChanges: Selectors.unsavedGet(state),
-});
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- clearUnsaved: () => dispatch(clearUnsaved()),
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(MainNav);
diff --git a/conda/js/src/components/NewEntityModal.jsx b/conda/js/src/components/NewEntityModal.jsx
deleted file mode 100644
index a1ce167aa3ef55f369f86e0ba216a9b46f57747b..0000000000000000000000000000000000000000
--- a/conda/js/src/components/NewEntityModal.jsx
+++ /dev/null
@@ -1,537 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Button,
- Form, FormGroup, Label, Input,
- Modal, ModalHeader, ModalBody, ModalFooter,
- FormText,
- Col,
- Badge,
- Row,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import { generateNewKey } from '@helpers';
-import { BEAT_ENTITIES, nameValidator, nameSegmentsForEntity, getTcFromExpName } from '@helpers/beat';
-import type { BeatEntity, BeatObject } from '@helpers/beat';
-import CacheInput from './CacheInput.jsx';
-
-import * as Selectors from '@store/selectors.js';
-import * as Actions from '@store/actions';
-
-import { getValidDatabaseObj } from '@helpers/beat';
-import { getValidDataformatObj } from '@helpers/beat';
-import { getValidLibraryObj } from '@helpers/beat';
-import { getValidAlgorithmObj } from '@helpers/beat';
-import { getValidToolchainObj } from '@helpers/beat';
-import { getValidExperimentObj } from '@helpers/beat';
-import { getValidPlotterObj } from '@helpers/beat';
-import { getValidPlotterparameterObj } from '@helpers/beat';
-
-const getObjs = {
- database: getValidDatabaseObj,
- dataformat: getValidDataformatObj,
- library: getValidLibraryObj,
- algorithm: getValidAlgorithmObj,
- toolchain: getValidToolchainObj,
- experiment: getValidExperimentObj,
- plotter: getValidPlotterObj,
- plotterparameter: getValidPlotterparameterObj,
-};
-
-type Props = {
- isOpen: boolean,
- toggle: () => mixed,
- entity: BeatEntity,
- copyObj?: BeatObject,
- create: (string, BeatObject[], BeatObject[], ?BeatObject) => mixed,
- data: BeatObject[],
- toolchains: BeatObject[],
- algorithms: BeatObject[],
- // if true, the name is being changed but the version is stuck at 1 (for copying or creating new)
- // if false, the name is stuck and the version is incremented (for making a new version)
- nameOrVersion: boolean,
-};
-
-type State = {
- nameSegs: string[],
- numSegs: number,
-};
-
-const getStartNameSegs = (copyObj?: BeatObject, existingNames: string[], entity: BeatEntity, nameOrVersion: boolean) => {
- const autoVersion = entity !== 'experiment';
- if(copyObj){
- const newName = copyObj.name || '';
- const segs = newName.split('/');
- if(autoVersion){
- const version = Number.parseInt(segs[segs.length - 1]);
- segs[segs.length - 1] = `${ nameOrVersion ? 1 : version + 1 }`;
- }
- return segs;
- } else {
- const len = nameSegmentsForEntity(entity);
- return Array.apply(null, Array(len)).map((u, i) => i === len - 1 && autoVersion ? '1' : '');
- }
-};
-
-export class NewEntityModal extends React.Component<Props, State> {
- constructor(props: Props) {
- super(props);
- }
-
- state = {
- nameSegs: getStartNameSegs(this.props.copyObj, this.props.data.map(d => d.name), this.props.entity, this.props.nameOrVersion),
- numSegs: nameSegmentsForEntity(this.props.entity),
- }
-
- componentDidUpdate = (prevProps: Props) => {
- if(this.props !== prevProps){
- this.setState({
- nameSegs: getStartNameSegs(this.props.copyObj, this.props.data.map(d => d.name), this.props.entity, this.props.nameOrVersion),
- numSegs: nameSegmentsForEntity(this.props.entity),
- });
- }
- }
-
- titleStr = () => `New ${ this.props.entity }: "${ this.getNameString() }"`;
-
- submit = (name: string) => {
- if(!this.nameIsValid())
- return;
-
- this.props.create(name, this.props.algorithms, this.props.toolchains, this.props.copyObj);
- this.props.toggle();
- }
-
- getNameString = (lastSeg?: string) => {
- let segs = [...this.state.nameSegs];
- if(lastSeg)
- segs[segs.length - 1] = lastSeg;
- return segs.join('/');
- }
-
- validatorFunc = () => nameValidator(this.props.entity, this.props.data.map(d => d.name));
-
- nameIsValid = (str: string = this.getNameString()): true | React.Node => {
- const err = `Please provide a unique and valid ${ this.props.entity } name`;
- ;
- const isValid = this.validatorFunc()(str);
- return isValid || err;
- }
-
- handleInput = (...segs: Array<?string>) => {
- const newSegs = Array.apply(null, Array(this.state.numSegs))
- .map((u, i) => segs[i] || this.state.nameSegs[i] || '');
- this.setState({
- nameSegs: newSegs,
- });
- }
-
- render () {
- const nameValidity = this.nameIsValid();
- const nameOrVersion = this.props.nameOrVersion;
- return (
- <Modal isOpen={this.props.isOpen} toggle={this.props.toggle} size='lg'>
- <ModalHeader toggle={this.props.toggle}>
- { this.titleStr() }
- {' '}
- <Badge
- color={`${ nameValidity === true ? 'success' : 'danger' }`}
- title={nameValidity === true ? undefined : nameValidity}
- >
- {`${ nameValidity === true ? 'Valid Name' : 'Invalid Name' }`}
- </Badge>
- </ModalHeader>
- <ModalBody>
- <Form>
- <FormGroup row>
- {/* database */}
- { this.props.entity === 'database' &&
- <React.Fragment>
- <Col sm={6}>
- <Label>Name</Label>
- <CacheInput
- delay={0}
- type='text'
- name='name'
- placeholder={`New database name...`}
- value={this.state.nameSegs[0]}
- onChange={(e) => this.handleInput(e.target.value)}
- fieldTest
- autoFocus
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={6}>
- <Label>Version</Label>
- <CacheInput
- delay={0}
- type='text'
- name='version'
- placeholder={`Database version...`}
- value={this.state.nameSegs[1]}
- validateFunc={(str) => `${ Number.parseInt(str) }` === str}
- onChange={(e) => this.handleInput(undefined, e.target.value)}
- disabled
- />
- </Col>
- </React.Fragment>
- }
- {/* library */}
- { this.props.entity === 'library' &&
- <React.Fragment>
- <Col sm={4}>
- <Label>User</Label>
- <CacheInput
- delay={0}
- type='text'
- name='user'
- placeholder={`Library user...`}
- value={this.state.nameSegs[0]}
- onChange={(e) => this.handleInput(e.target.value)}
- fieldTest
- autoFocus
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Name</Label>
- <CacheInput
- delay={0}
- type='text'
- name='name'
- placeholder={`New library name...`}
- value={this.state.nameSegs[1]}
- onChange={(e) => this.handleInput(undefined, e.target.value)}
- fieldTest
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Version</Label>
- <CacheInput
- delay={0}
- type='text'
- name='version'
- placeholder={`Library version...`}
- value={this.state.nameSegs[2]}
- validateFunc={(str) => `${ Number.parseInt(str) }` === str}
- onChange={(e) => this.handleInput(undefined, undefined, e.target.value)}
- disabled
- />
- </Col>
- </React.Fragment>
- }
- {/* dataformat */}
- { this.props.entity === 'dataformat' &&
- <React.Fragment>
- <Col sm={4}>
- <Label>User</Label>
- <CacheInput
- delay={0}
- type='text'
- name='user'
- placeholder={`Dataformat user...`}
- value={this.state.nameSegs[0]}
- onChange={(e) => this.handleInput(e.target.value)}
- fieldTest
- autoFocus
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Name</Label>
- <CacheInput
- delay={0}
- type='text'
- name='name'
- placeholder={`New dataformat name...`}
- value={this.state.nameSegs[1]}
- onChange={(e) => this.handleInput(undefined, e.target.value)}
- fieldTest
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Version</Label>
- <CacheInput
- delay={0}
- type='text'
- name='version'
- placeholder={`Dataformat version...`}
- value={this.state.nameSegs[2]}
- validateFunc={(str) => `${ Number.parseInt(str) }` === str}
- onChange={(e) => this.handleInput(undefined, undefined, e.target.value)}
- disabled
- />
- </Col>
- </React.Fragment>
- }
- {/* algorithm */}
- { this.props.entity === 'algorithm' &&
- <React.Fragment>
- <Col sm={4}>
- <Label>User</Label>
- <CacheInput
- delay={0}
- type='text'
- name='user'
- placeholder={`Algorithm user...`}
- value={this.state.nameSegs[0]}
- onChange={(e) => this.handleInput(e.target.value)}
- fieldTest
- autoFocus
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Name</Label>
- <CacheInput
- delay={0}
- type='text'
- name='name'
- placeholder={`New algorithm name...`}
- value={this.state.nameSegs[1]}
- onChange={(e) => this.handleInput(undefined, e.target.value)}
- fieldTest
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Version</Label>
- <CacheInput
- delay={0}
- type='text'
- name='version'
- placeholder={`Algorithm version...`}
- value={this.state.nameSegs[2]}
- validateFunc={(str) => `${ Number.parseInt(str) }` === str}
- onChange={(e) => this.handleInput(undefined, undefined, e.target.value)}
- disabled
- />
- </Col>
- </React.Fragment>
- }
- {/* toolchain */}
- { this.props.entity === 'toolchain' &&
- <React.Fragment>
- <Col sm={4}>
- <Label>User</Label>
- <CacheInput
- delay={0}
- type='text'
- name='user'
- placeholder={`Toolchain user...`}
- value={this.state.nameSegs[0]}
- onChange={(e) => this.handleInput(e.target.value)}
- fieldTest
- autoFocus
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Name</Label>
- <CacheInput
- delay={0}
- type='text'
- name='name'
- placeholder={`New toolchain name...`}
- value={this.state.nameSegs[1]}
- onChange={(e) => this.handleInput(undefined, e.target.value)}
- fieldTest
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Version</Label>
- <CacheInput
- delay={0}
- type='text'
- name='version'
- placeholder={`Toolchain version...`}
- value={this.state.nameSegs[2]}
- validateFunc={(str) => `${ Number.parseInt(str) }` === str}
- onChange={(e) => this.handleInput(undefined, undefined, e.target.value)}
- disabled
- />
- </Col>
- </React.Fragment>
- }
- {/* experiment */}
- { this.props.entity === 'experiment' &&
- <React.Fragment>
- <Col sm={4}>
- <Label>User</Label>
- <CacheInput
- delay={0}
- type='text'
- name='user'
- placeholder={`Experiment user...`}
- value={this.state.nameSegs[0]}
- onChange={(e) => this.handleInput(e.target.value)}
- fieldTest
- autoFocus
- />
- </Col>
- <Col sm={4}>
- <Label>Toolchain</Label>
- <Input
- type='select'
- name='toolchain'
- placeholder={`Experiment toolchain name...`}
- value={this.state.nameSegs.slice(1, 4).filter(s => s !== '').join('/')}
- onChange={(e) => this.handleInput(undefined, ...e.target.value.split('/'))}
- >
- <option value=''>Toolchain...</option>
- {
- this.props.toolchains.map((tc, i) =>
- <option key={i} value={tc.name}>{ tc.name}</option>
- )
- }
- </Input>
- </Col>
- <Col sm={4}>
- <Label>Name</Label>
- <CacheInput
- delay={0}
- type='text'
- name='user'
- placeholder={`Experiment name...`}
- value={this.state.nameSegs[4]}
- onChange={(e) => this.handleInput(undefined, undefined, undefined, undefined, e.target.value)}
- fieldTest
- autoFocus
- />
- </Col>
- </React.Fragment>
- }
- {/* plotter */}
- { this.props.entity === 'plotter' &&
- <React.Fragment>
- <Col sm={4}>
- <Label>User</Label>
- <CacheInput
- delay={0}
- type='text'
- name='user'
- placeholder={`Plotter user...`}
- value={this.state.nameSegs[0]}
- onChange={(e) => this.handleInput(e.target.value)}
- fieldTest
- autoFocus
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Name</Label>
- <CacheInput
- delay={0}
- type='text'
- name='name'
- placeholder={`New plotter name...`}
- value={this.state.nameSegs[1]}
- onChange={(e) => this.handleInput(undefined, e.target.value)}
- fieldTest
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Version</Label>
- <CacheInput
- delay={0}
- type='text'
- name='version'
- placeholder={`Plotter version...`}
- value={this.state.nameSegs[2]}
- validateFunc={(str) => `${ Number.parseInt(str) }` === str}
- onChange={(e) => this.handleInput(undefined, undefined, e.target.value)}
- disabled
- />
- </Col>
- </React.Fragment>
- }
- {/* plotterparameter */}
- { this.props.entity === 'plotterparameter' &&
- <React.Fragment>
- <Col sm={4}>
- <Label>User</Label>
- <CacheInput
- delay={0}
- type='text'
- name='user'
- placeholder={`Plotterparameter user...`}
- value={this.state.nameSegs[0]}
- onChange={(e) => this.handleInput(e.target.value)}
- fieldTest
- autoFocus
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Name</Label>
- <CacheInput
- delay={0}
- type='text'
- name='name'
- placeholder={`New plotterparameter name...`}
- value={this.state.nameSegs[1]}
- onChange={(e) => this.handleInput(undefined, e.target.value)}
- fieldTest
- disabled={!nameOrVersion}
- />
- </Col>
- <Col sm={4}>
- <Label>Version</Label>
- <CacheInput
- delay={0}
- type='text'
- name='version'
- placeholder={`Plotterparameter version...`}
- value={this.state.nameSegs[2]}
- validateFunc={(str) => `${ Number.parseInt(str) }` === str}
- onChange={(e) => this.handleInput(undefined, undefined, e.target.value)}
- disabled
- />
- </Col>
- </React.Fragment>
- }
- </FormGroup>
- </Form>
- </ModalBody>
- <ModalFooter>
- <Button
- color="primary"
- disabled={nameValidity !== true}
- onClick={() => this.submit(this.getNameString())}
- >Create</Button>{' '}
- <Button color="secondary" onClick={this.props.toggle}>Cancel</Button>
- </ModalFooter>
- </Modal>
- );
- }
-}
-
-const mapStateToProps = (state, ownProps) => ({
- data: Selectors[`${ ownProps.entity }Get`](state),
- toolchains: Selectors.toolchainGet(state),
- algorithms: Selectors.algorithmGet(state),
- plotters: Selectors.plotterGet(state),
-});
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- create: (name: string, algorithms: BeatObject[], toolchains: BeatObject[], copyObj?: any = {}) => {
- let newObj;
- if(ownProps.entity === 'experiment'){
- const tcName = getTcFromExpName(name);
- const tc = toolchains.find(o => o.name === tcName);
- newObj = getObjs[ownProps.entity]({ ...copyObj, name }, tc, algorithms);
- } else {
- newObj = getObjs[ownProps.entity]({ ...copyObj, name });
- }
-
- return dispatch(Actions.createObject(ownProps.entity, newObj, copyObj.name)());
- }
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(NewEntityModal);
diff --git a/conda/js/src/components/NewEntityModal.spec.jsx b/conda/js/src/components/NewEntityModal.spec.jsx
deleted file mode 100644
index ac8f5ba977e297faa88b6257ac13528593e4b792..0000000000000000000000000000000000000000
--- a/conda/js/src/components/NewEntityModal.spec.jsx
+++ /dev/null
@@ -1,447 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-
-import { NewEntityModal as C } from './NewEntityModal.jsx';
-import test_dbs from '@test/test_dbs.json';
-import test_dfs from '@test/test_dfs.json';
-import test_libs from '@test/test_libs.json';
-import test_algs from '@test/test_algs.json';
-import test_tcs from '@test/test_tcs.json';
-import test_exps from '@test/test_exps.json';
-
-type Props = {
- isOpen: boolean,
- toggle: () => mixed,
- entity: BeatEntity,
- copyObj?: BeatObject,
- create: (string, BeatObject[], BeatObject[], ?BeatObject) => mixed,
- data: BeatObject[],
- toolchains: BeatObject[],
- algorithms: BeatObject[],
- // if true, the name is being changed but the version is stuck at 1 (for copying or creating new)
- // if false, the name is stuck and the version is incremented (for making a new version)
- nameOrVersion: boolean,
-};
-
-describe('<NewEntityModal />', () => {
- let wrapper;
- const entities = [
- 'database',
- 'dataformat',
- 'library',
- 'algorithm',
- 'toolchain',
- 'experiment',
- 'plotter',
- 'plotterparameter',
- ];
- const isOpen = true;
- const create = sinon.spy();
- const toggle = sinon.spy();
-
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- it(`has 9 required props and is missing 1 optional`, () => {
- const entity = 'database';
- const nameOrVersion = true;
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- />
- );
-
- expect(wrapper).to.have.props(
- ['isOpen', 'toggle', 'create', 'entity', 'data', 'algorithms', 'toolchains', 'nameOrVersion']
- ).deep.equal(
- [isOpen, toggle, create, entity, test_dbs, test_algs, test_tcs, nameOrVersion]
- );
-
- expect(wrapper).to.not.have.props(
- ['copyObj']
- );
- });
-
- it(`has all 10 props`, () => {
- const entity = 'database';
- const nameOrVersion = true;
- const copyObj = test_dbs[0];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper).to.have.props(
- ['isOpen', 'toggle', 'create', 'entity', 'data', 'algorithms', 'toolchains', 'nameOrVersion', 'copyObj']
- ).deep.equal(
- [isOpen, toggle, create, entity, test_dbs, test_algs, test_tcs, nameOrVersion, copyObj]
- );
- });
-
- describe('for databases', () => {
- const entity = 'database';
- it(`properly handles creating a new object`, () => {
- const nameOrVersion = true;
- const copyObj = undefined;
- const newNameSegs = ['', `1`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(2);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(2);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(false);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(true);
- });
-
- it(`properly handles copying`, () => {
- const nameOrVersion = true;
- const copyObj = test_dbs[0];
- const oldNameSegs = copyObj.name.split('/');
- const copyVersion = Number.parseInt(oldNameSegs.slice(-1)[0]);
- const newNameSegs = [...oldNameSegs.slice(0, -1), `1`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(2);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(2);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(false);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(true);
- });
-
- it(`properly handles creating a new version`, () => {
- const nameOrVersion = false;
- const copyObj = test_dbs[0];
- const oldNameSegs = copyObj.name.split('/');
- const copyVersion = Number.parseInt(oldNameSegs.slice(-1)[0]);
- const newNameSegs = [...oldNameSegs.slice(0, -1), `${ copyVersion + 1 }`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(2);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(2);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(true);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(true);
- });
- });
-
- describe('for databases', () => {
- const entity = 'database';
- it(`properly handles creating a new object`, () => {
- const nameOrVersion = true;
- const copyObj = undefined;
- const newNameSegs = ['', `1`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(2);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(2);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(false);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(true);
- });
-
- it(`properly handles copying`, () => {
- const nameOrVersion = true;
- const copyObj = test_dbs[0];
- const oldNameSegs = copyObj.name.split('/');
- const copyVersion = Number.parseInt(oldNameSegs.slice(-1)[0]);
- const newNameSegs = [...oldNameSegs.slice(0, -1), `1`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(2);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(2);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(false);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(true);
- });
-
- it(`properly handles creating a new version`, () => {
- const nameOrVersion = false;
- const copyObj = test_dbs[0];
- const oldNameSegs = copyObj.name.split('/');
- const copyVersion = Number.parseInt(oldNameSegs.slice(-1)[0]);
- const newNameSegs = [...oldNameSegs.slice(0, -1), `${ copyVersion + 1 }`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(2);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(2);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(true);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(true);
- });
- });
-
- describe('for algorithms', () => {
- const entity = 'algorithm';
- it(`properly handles creating a new object`, () => {
- const nameOrVersion = true;
- const copyObj = undefined;
- const newNameSegs = ['', '', `1`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_algs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(3);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(3);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(false);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(false);
- expect(inputs.get(2).props.value).to.equal(newNameSegs[2]);
- expect(inputs.get(2).props.disabled).to.equal(true);
- });
-
- it(`properly handles copying`, () => {
- const nameOrVersion = true;
- const copyObj = test_algs[0];
- const oldNameSegs = copyObj.name.split('/');
- const copyVersion = Number.parseInt(oldNameSegs.slice(-1)[0]);
- const newNameSegs = [...oldNameSegs.slice(0, -1), `1`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(3);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(3);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(false);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(false);
- expect(inputs.get(2).props.value).to.equal(newNameSegs[2]);
- expect(inputs.get(2).props.disabled).to.equal(true);
- });
-
- it(`properly handles creating a new version`, () => {
- const nameOrVersion = false;
- const copyObj = test_algs[0];
- const oldNameSegs = copyObj.name.split('/');
- const copyVersion = Number.parseInt(oldNameSegs.slice(-1)[0]);
- const newNameSegs = [...oldNameSegs.slice(0, -1), `${ copyVersion + 1 }`];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_dbs}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(3);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- expect(inputs).to.have.length(3);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.equal(true);
- expect(inputs.get(1).props.value).to.equal(newNameSegs[1]);
- expect(inputs.get(1).props.disabled).to.equal(true);
- expect(inputs.get(2).props.value).to.equal(newNameSegs[2]);
- expect(inputs.get(2).props.disabled).to.equal(true);
- });
- });
-
- describe('for experiments', () => {
- const entity = 'experiment';
- it(`properly handles creating a new object`, () => {
- const nameOrVersion = true;
- const copyObj = undefined;
- const newNameSegs = ['', '', '', '', ''];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_exps}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(5);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- const select = wrapper.find('select');
- expect(inputs).to.have.length(2);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.be.undefined;
- expect(select.get(0).props.value).to.equal('');
- expect(select.get(0).props.disabled).to.be.undefined;
- expect(inputs.get(1).props.value).to.equal(newNameSegs[4]);
- expect(inputs.get(1).props.disabled).to.be.undefined;
- });
-
- it(`properly handles copying`, () => {
- const nameOrVersion = true;
- const copyObj = test_exps[0];
- const oldNameSegs = copyObj.name.split('/');
- const newNameSegs = [...oldNameSegs];
- wrapper = mount(
- <C
- isOpen={isOpen}
- toggle={toggle}
- create={create}
- entity={entity}
- data={test_exps}
- algorithms={test_algs}
- toolchains={test_tcs}
- nameOrVersion={nameOrVersion}
- copyObj={copyObj}
- />
- );
-
- expect(wrapper.state('numSegs')).to.equal(5);
- expect(wrapper.state('nameSegs')).to.deep.equal(newNameSegs);
- const inputs = wrapper.find('input');
- const select = wrapper.find('select');
- expect(inputs).to.have.length(2);
- expect(inputs.get(0).props.value).to.equal(newNameSegs[0]);
- expect(inputs.get(0).props.disabled).to.be.undefined;
- expect(select.get(0).props.value).to.equal(newNameSegs.slice(1, 4).join('/'));
- expect(select.get(0).props.disabled).to.be.undefined;
- expect(inputs.get(1).props.value).to.equal(newNameSegs[4]);
- expect(inputs.get(1).props.disabled).to.be.undefined;
- });
- });
-});
diff --git a/conda/js/src/components/ParameterConsume.jsx b/conda/js/src/components/ParameterConsume.jsx
deleted file mode 100644
index 128b6d9b173c5b598994b56e1fbf34746cd77b53..0000000000000000000000000000000000000000
--- a/conda/js/src/components/ParameterConsume.jsx
+++ /dev/null
@@ -1,88 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Label, Input,
-} from 'reactstrap';
-
-import { expGetDefaultParameterValue as getDefaultParameterValue } from '@helpers/beat';
-import type { ParameterValue } from '@helpers/beat';
-
-type Props = {
- parameter: any,
- updateFunc: (ParameterValue) => any,
- currVal?: ParameterValue,
-};
-
-// given a parameter obj, its current value, and an update function,
-// return an input for the specific type of parameter
-const ParameterConsume = ({ parameter, updateFunc, currVal }: Props) => {
- if((parameter === null || parameter === undefined) || !parameter.hasOwnProperty('type'))
- return '';
-
- const parseVal = (v: ParameterValue): ParameterValue => {
- if(v === true || v === false)
- return v;
- if(parameter.type.includes('float'))
- return Number.parseFloat(`${ v }`);
- if(parameter.type.includes('int'))
- return Number.parseInt(`${ v }`);
- return v;
- };
-
- const pVal = currVal === undefined ? getDefaultParameterValue(parameter) : currVal;
- if(parameter.hasOwnProperty('choice'))
- return (
- <Input
- type='select'
- className='custom-select'
- value={pVal}
- onChange={e => updateFunc(parseVal(e.target.value))}
- >
- { parameter.choice.map((c, i) => <option key={i} value={c}>{c}</option>) }
- </Input>
- );
- if(parameter.hasOwnProperty('range'))
- return (
- <Input
- type='number'
- min={parameter.range[0]}
- max={parameter.range[1]}
- value={pVal}
- onChange={e => updateFunc(parseVal(e.target.value))}
- />
- );
- if(parameter.type === 'bool')
- return (
- <Label>
- <Input
- className='ml-0'
- type='checkbox'
- checked={pVal}
- onChange={e => updateFunc(parseVal(e.target.checked))}
- />
- </Label>
- );
- if(parameter.type === 'string')
- return (
- <Input
- type='text'
- value={pVal}
- onChange={e => updateFunc(parseVal(e.target.value))}
- />
- );
- else {
- const step = parameter.type.includes('float') ? 'any' : 1;
- return (
- <Input
- type='number'
- min={-1000000}
- max={1000000}
- step={step}
- value={pVal}
- onChange={e => updateFunc(parseVal(e.target.value))}
- />
- );
- }
-};
-
-export default ParameterConsume;
diff --git a/conda/js/src/components/ParameterCreate.jsx b/conda/js/src/components/ParameterCreate.jsx
deleted file mode 100644
index 7ae95a89cd5e91260a13e6b55b97e013f34aea1a..0000000000000000000000000000000000000000
--- a/conda/js/src/components/ParameterCreate.jsx
+++ /dev/null
@@ -1,381 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Row,
- Col,
- Button,
- FormGroup,
- Label, Input,
- UncontrolledDropdown, DropdownToggle, DropdownMenu,
- InputGroup, InputGroupAddon,
-} from 'reactstrap';
-
-import { BUILTIN_TYPES, ANALYZER_RESULT_TYPES } from '@helpers/beat';
-
-import TypedField from './TypedField.jsx';
-
-type Props = {
- name: string,
- param: any,
- params: any[],
- updateParameter: (name: string | null, parameter: any | null, oldName: ?string) => any,
-};
-
-type State = {
- choiceCache: string
-};
-
-export default class ParameterCreate extends React.Component<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- state = {
- choiceCache: '',
- }
-
- shouldComponentUpdate = (nextProps: Props, nextState: State) => {
- // basically PureComponent but not checking updateParameter func which wont change by itself
- // props check
- if(nextProps.name !== this.props.name || nextProps.param !== this.props.param || nextProps.params !== this.props.params)
- return true;
- // state check
- if(nextState.choiceCache !== this.state.choiceCache)
- return true;
- return false;
- }
-
- render = () => {
- const name = this.props.name;
- const param = this.props.param;
- const params = this.props.params;
- const updateParameter = this.props.updateParameter;
-
- let new_param = false;
- if (param.type == 'bool')
- {
- if(typeof(param.default) == 'string')
- {
- new_param = true;
- }
- else
- {
- new_param = false;
- }
- }
-
- return (
- <React.Fragment>
- <TypedField
- placeholder='Parameter name...'
- name={name}
- type={param.type}
- types={BUILTIN_TYPES.filter(d => !d.startsWith('complex'))}
- existingFields={params.map(([n, v]) => n)}
- nameUpdateFunc={str => updateParameter(str, param, name)}
- typeUpdateFunc={(str) => {
- const newParam = {
- ...param,
- type: str
- };
-
- switch(newParam.type){
- case 'string':
- delete newParam['range'];
- break;
- case 'bool':
- delete newParam['range'];
- delete newParam['choice'];
- break;
- default:
- break;
- }
-
- updateParameter(name, newParam);
- }}
- deleteFunc={() => {
- updateParameter(null, null, name);
- }}
-
- >
- <Col>
- <Input
- type='text'
- placeholder='Description'
- value={param[name] || param.description || ''}
- onChange={(e) => updateParameter(name, {
- ...param,
- description: e.target.value
- })}
- />
- </Col>
- </TypedField>
- <FormGroup row className='ml-3'>
- {
- param.type !== 'bool' &&
- <Col sm='4'>
- <Label>Restrict to...</Label>
- <FormGroup check>
- <Row>
- <Col>
- <Label check>
- <Input
- type='checkbox'
- checked={Array.isArray(param.choice)}
- onChange={e => {
- const b = e.target.checked;
- const newParam = {...param};
- if(b){
- delete newParam['range'];
- newParam['choice'] = [];
- } else {
- delete newParam['choice'];
- }
-
- updateParameter(name, newParam);
- }}
- />{' '}
- Choices
- </Label>
- </Col>
- {
- param.type !== 'string' &&
- <Col>
- <Label check className='ml-3'>
- <Input
- type='checkbox'
- checked={Array.isArray(param.range)}
- onChange={e => {
- const b = e.target.checked;
- const newParam = {...param};
- if(b){
- delete newParam['choice'];
- newParam['range'] = [0, 1];
- } else {
- delete newParam['range'];
- }
-
- updateParameter(name, newParam);
- }}
- />{' '}
- Range
- </Label>
- </Col>
- }
- </Row>
- </FormGroup>
- </Col>
- }
- {
- Array.isArray(param.choice) &&
- <Col sm='auto'>
- <Label>
- Choices
- </Label>
- <UncontrolledDropdown>
- <DropdownToggle caret>
- Choices List
- </DropdownToggle>
- <DropdownMenu className='p-0'>
- {
- param.choice
- .map((c, j) =>
- <InputGroup key={j}>
- <Input
- defaultValue={c}
- className='border-top-0 border-left-0 border-right-0 rounded-0'
- onSubmit={e => {
- e.preventDefault();
- }}
- onChange={e => {
- updateParameter(
- name,
- {
- ...param,
- choice: param.choice.map((c, k) => k === j ? e.target.value : c)
- });
- }}
- />
- <InputGroupAddon addonType='append'>
- <Button
- className='border-top-0 border-left-0 border-right-0 rounded-0'
- color='danger'
- onClick={e => {
- updateParameter(name,
- {
- ...param,
- choice: param.choice.filter((c, k) => k !== j)
- }
- );
- }}
- >
- x
- </Button>
- </InputGroupAddon>
- </InputGroup>
- )
- }
- <Input
- placeholder='New Choice...'
- className='border-top-0 border-left-0 border-right-0 rounded-0'
- value={this.state.choiceCache}
- onSubmit={e => {
- e.preventDefault();
- }}
- onBlur={e => {
- if(this.state.choiceCache.length > 0)
- updateParameter(name,
- {
- ...param,
- choice: [
- ...param.choice,
- this.state.choiceCache
- ]
- });
- this.setState({ choiceCache: '' });
- }}
- onChange={e => {
- this.setState({ choiceCache: e.target.value });
- }}
- onKeyPress={e => {
- if(e.key === 'Enter'){
- if(this.state.choiceCache.length > 0)
- updateParameter(name,
- {
- ...param,
- choice: [
- ...param.choice,
- this.state.choiceCache
- ]
- }
- );
- this.setState({ choiceCache: '' });
- }
- }}
- />
- </DropdownMenu>
- </UncontrolledDropdown>
- </Col>
- }
- {
- Array.isArray(param.range) &&
- <Col sm='4'>
- <Label>
- Range
- </Label>
- <FormGroup row>
- <Col>
- <InputGroup>
- <InputGroupAddon>Min</InputGroupAddon>
- <Input
- type='number'
- step={param.type.startsWith('float') ? 'any' : '1'}
- value={param.range[0]}
- onChange={e => {
- const num = e.target.value;
- const newParam = {
- ...param,
- range: [
- num,
- param.range[1],
- ]
- };
- updateParameter(
- name,
- newParam
- );
- }}
- required
- />
- </InputGroup>
- </Col>
- <Col>
- <InputGroup>
- <InputGroupAddon>Max</InputGroupAddon>
- <Input
- type='number'
- step={param.type.startsWith('float') ? 'any' : '1'}
- value={param.range[1]}
- required
- onChange={e => {
- const num = e.target.value;
- const newParam = {
- ...param,
- range: [
- param.range[0],
- num,
- ]
- };
- updateParameter(
- name,
- newParam
- );
- }}
- />
- </InputGroup>
- </Col>
- </FormGroup>
- </Col>
- }
- { param.type !== 'bool' &&
- <Col>
- <Label for={`default${ name }`}>
- Default
- </Label>
- <Input
- name={`default${ name }`}
- type='text'
- placeholder='Default'
- value={param.default}
- onChange={(e) => updateParameter(name, {
- ...param,
- default: e.target.value
- })}
- />
- </Col>
- ||
- <Col sm='auto'>
- <Label>
- Default
- </Label>
- <FormGroup check>
- <Row>
- <Col>
- <Label check>
- <Input
- name={`default${ name }`}
- type='radio'
- checked={param.default && !new_param}
- value={true}
- onChange={(e) => updateParameter(name, {
- ...param,
- default: JSON.parse(e.target.value)
- })}
- />
- True
- </Label>
- </Col>
- <Col>
- <Label check className='ml-1'>
- <Input
- name={`default${ name }`}
- type='radio'
- checked={!param.default && !new_param}
- value={false}
- onChange={(e) => updateParameter(name, {
- ...param,
- default: JSON.parse(e.target.value)
- })}
- />
- False
- </Label>
- </Col>
- </Row>
- </FormGroup>
- </Col>
- }
- </FormGroup>
- </React.Fragment>
- );
- }
-}
diff --git a/conda/js/src/components/ParameterCreate.spec.jsx b/conda/js/src/components/ParameterCreate.spec.jsx
deleted file mode 100644
index 8d2d6e251c5717db53bf152e9e63fdb328216db1..0000000000000000000000000000000000000000
--- a/conda/js/src/components/ParameterCreate.spec.jsx
+++ /dev/null
@@ -1,69 +0,0 @@
-//// @flow
-//import React from 'react';
-//import { expect } from 'chai';
-//import { mount } from 'enzyme';
-//import sinon from 'sinon';
-//import { spies } from '@test';
-//
-//import C from './ParameterCreate.jsx';
-//
-//describe.only('<ParameterCreate />', () => {
-// let wrapper;
-// const name = 'parameter';
-// // shortcut for a func to update just the parameter obj, not the name
-// const _updateParameter = (name, p, oldName) => {
-// wrapper.setProps({
-// param: p,
-// });
-// };
-// const params = [];
-//
-// afterEach(() => {
-// if(wrapper && wrapper.unmount)
-// wrapper.unmount();
-// });
-//
-// it(`saves the default value of a boolean parameter`, () => {
-// let param = {
-// type: '',
-// default: '',
-// description: '',
-// };
-// const updateParameter = sinon.spy(_updateParameter);
-//
-// wrapper = mount(
-// <C
-// name={name}
-// param={param}
-// params={params}
-// updateParameter={updateParameter}
-// />
-// );
-//
-// // sanity checks
-// expect(wrapper.find('TypedField')).to.have.prop('name', name);
-//
-// wrapper.find('Input.custom-select').prop('onChange')( { target: { value: 'bool' }});
-// wrapper.update();
-// console.log(wrapper.props().param);
-// expect(wrapper.props().param).to.deep.equal(
-// {
-// type: 'bool',
-// default: '',
-// description: '',
-// }
-// );
-//
-// // wrapper.find('input[type="radio"]').at(0).simulate('change', { target: { checked: 'true' }});;
-// wrapper.find('input[type="radio"]').at(0).simulate('change', { target: { value: 'true' }});;
-// wrapper.update();
-// expect(updateParameter.args[0]).to.deep.equal([
-// name,
-// {
-// type: 'bool',
-// default: 'true',
-// description: '',
-// }
-// ]);
-// });
-//});
diff --git a/conda/js/src/components/SearchBar.jsx b/conda/js/src/components/SearchBar.jsx
deleted file mode 100644
index dc8e433f6de014c192f670d80c8b17eecb18f7f7..0000000000000000000000000000000000000000
--- a/conda/js/src/components/SearchBar.jsx
+++ /dev/null
@@ -1,145 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- Badge,
- Dropdown, DropdownMenu, DropdownItem, DropdownToggle,
- Input,
- Button,
-} from 'reactstrap';
-
-import { Link } from 'react-router-dom';
-
-import { connect } from 'react-redux';
-
-import * as Selectors from '@store/selectors.js';
-
-import { pluralize } from '@helpers/beat';
-import type { BeatEntity, BeatObject } from '@helpers/beat';
-
-import SearchWorker from '@helpers/search.worker.js';
-
-type Props = {
- entity: BeatEntity,
- data: BeatObject[],
-};
-
-type State = {
- searchResults: BeatObject[],
- resultsOpen: boolean,
-};
-
-class SearchBar extends React.PureComponent<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- state = {
- searchResults: [],
- resultsOpen: false,
- }
-
- searchWorker = null;
-
- componentDidMount = () => {
- this.searchWorker = new SearchWorker();
- this.searchWorker.onmessage = (m) => {
- this.setState(prevState => ({
- searchResults: m.data.slice(0, 5),
- resultsOpen: m.data.length > 0,
- }));
- };
- this.updateFuseInstance();
- }
-
- componentDidUpdate = (prevProps: Props) => {
- if(this.props.data !== prevProps.data){
- this.updateFuseInstance(this.props.data);
- }
- }
-
- updateFuseInstance = (data: BeatObject[] = this.props.data) => {
- if(!this.searchWorker)
- throw new Error(`searchWorker is not instantiated!`);
- this.searchWorker.postMessage(
- {
- type: 'dataChanged',
- payload: {
- data,
- options: {
- shouldSort: true,
- tokenize: true,
- threshold: 0.6,
- location: 0,
- distance: 100,
- maxPatternLength: 32,
- minMatchCharLength: 1,
- keys: ['name', 'contents.description', 'contents.#description'],
- }
- }
- }
- );
- }
-
- search = (str: string) => {
- if(!this.searchWorker)
- throw new Error(`searchWorker is not instantiated!`);
- this.searchWorker.postMessage(
- {
- type: 'search',
- payload: str
- }
- );
- }
-
- toggleResults = (val: boolean = !this.state.resultsOpen) => {
- this.setState({ resultsOpen: val });
- };
-
- render = () => {
- return (
- <Dropdown
- isOpen={this.state.resultsOpen}
- toggle={e => this.toggleResults(false)}
- style={{flex: 1}}
- className='ml-2 mr-2'
- >
- <DropdownToggle
- tag='span'
- >
- <Input
- onChange={e => {
- this.search(e.target.value);
- }}
- placeholder={`Search ${ pluralize(this.props.entity) }...`}
- />
- </DropdownToggle>
- <DropdownMenu>
- {
- this.state.searchResults.map((r, i) =>
- <DropdownItem
- tag={Link}
- to={`/${ this.props.entity }/${ r.name }`}
- key={i}
- >
- { r.name }
- {' '}
- <small className='text-muted'>
- { r.contents.description || r.contents['#description'] || '' }
- </small>
- </DropdownItem>
- )
- }
- </DropdownMenu>
- </Dropdown>
- );
- }
-}
-
-const mapStateToProps = (state, ownProps) => ({
- data: Selectors[`${ ownProps.entity }Get`](state),
-});
-
-export default connect(mapStateToProps)(SearchBar);
diff --git a/conda/js/src/components/Settings.jsx b/conda/js/src/components/Settings.jsx
deleted file mode 100644
index c7d047c8a5da65ae26574e3757dbb0229466001c..0000000000000000000000000000000000000000
--- a/conda/js/src/components/Settings.jsx
+++ /dev/null
@@ -1,84 +0,0 @@
-// @flow
-import React from 'react';
-import {
- Button,
- Form, FormGroup, Label, Input,
- Modal, ModalHeader, ModalBody, ModalFooter,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-import * as Actions from '@store/actions.js';
-
-import * as Selectors from '@store/selectors';
-
-import { genModuleApiFuncs } from '@helpers/api';
-import type { BeatSettings } from '@helpers/beat';
-
-type Props = {
- isOpen: boolean,
- toggle: () => mixed,
- settings: BeatSettings,
- updateSettings: (obj: BeatSettings) => any,
- fetchAllObjects: () => any,
-};
-
-export class Settings extends React.PureComponent<Props> {
- constructor(props: Props){
- super(props);
- }
-
- save = async () => {
- await genModuleApiFuncs('settings').put(this.props.settings);
- await this.props.fetchAllObjects();
- }
-
- render = () => {
- const {isOpen, toggle, settings} = this.props;
- return (
- <Modal isOpen={isOpen} toggle={toggle} autoFocus={true}>
- <ModalHeader toggle={toggle}>Settings</ModalHeader>
- <ModalBody>
- <Form>
- {
- Object.entries(settings).map(([name, val], i) =>
- <FormGroup key={i}>
- <Label>{ name }</Label>
- <Input
- autoFocus
- value={val}
- onChange={e => {
- this.props.updateSettings({
- ...settings,
- [name]: e.target.value,
- });
- }}
- />
- </FormGroup>
- )
- }
- </Form>
- <a href='https://gitlab.idiap.ch/jdiefenbaugh/beat.editor'>Github</a>
- </ModalBody>
- <ModalFooter>
- <Button color="primary" onClick={this.save}>Write Settings to server</Button>
- <Button color="secondary" onClick={toggle}>Close</Button>
- </ModalFooter>
- </Modal>
- );
- }
-}
-
-const mapStateToProps = state => ({
- settings: Selectors.settingsGet(state),
-});
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- updateSettings: (obj) => {
- dispatch(Actions.settingsUpdate(obj));
- },
- fetchAllObjects: () => {
- dispatch(Actions.fetchAllObjects());
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(Settings);
diff --git a/conda/js/src/components/TypedField.jsx b/conda/js/src/components/TypedField.jsx
deleted file mode 100644
index 277b9264054c48e78095a7a8ba5860664ccfbfaa..0000000000000000000000000000000000000000
--- a/conda/js/src/components/TypedField.jsx
+++ /dev/null
@@ -1,75 +0,0 @@
-// @flow
-import * as React from 'react';
-
-import {
- Col,
- Input,
- FormGroup,
-} from 'reactstrap';
-
-import ValidSchemaBadge from './ValidSchemaBadge.jsx';
-import DeleteInputBtn from './DeleteInputBtn.jsx';
-import CacheInput from './CacheInput.jsx';
-
-type Props = {
- name: string,
- type: string,
- types: string[],
- typeTitles?: string[],
- existingFields: string[],
- nameUpdateFunc: (string) => any,
- typeUpdateFunc: (string) => any,
- nameValidateFunc?: (string) => boolean | React.Node,
- deleteFunc: (any) => any,
- children?: React.Node,
- placeholder?: string,
-};
-
-export const DupErr = ({ }: {}) => <span> Each field must have a unique name </span>;
-
-class TypedField extends React.PureComponent<Props> {
- constructor(props: Props){
- super(props);
- }
-
- render = () => (
- <FormGroup row>
- <Col sm='6'>
- <CacheInput
- type='text'
- placeholder={this.props.placeholder || 'Name...'}
- value={this.props.name}
- onChange={(e) => this.props.nameUpdateFunc(e.target.value)}
- validateFunc={(str) => {
- if(this.props.existingFields.includes(str))
- return <DupErr />;
- if(this.props.nameValidateFunc)
- return this.props.nameValidateFunc(str);
- return true;
- }}
- fieldTest
- >
- <DeleteInputBtn deleteFunc={this.props.deleteFunc} />
- </CacheInput>
- </Col>
- <Col>
- <Input
- type='select'
- className='custom-select'
- value={this.props.type}
- onChange={e => this.props.typeUpdateFunc(e.target.value)}
- >
- <option disabled value=''>Type...</option>
- {
- this.props.types.map((t, i) => (
- <option key={i} value={t}>{Array.isArray(this.props.typeTitles) ? this.props.typeTitles[i] : (t === 'object' ? 'dict' : t)}</option>
- ))
- }
- </Input>
- </Col>
- { this.props.children }
- </FormGroup>
- );
-}
-
-export default TypedField;
diff --git a/conda/js/src/components/ValidSchemaBadge.jsx b/conda/js/src/components/ValidSchemaBadge.jsx
deleted file mode 100644
index 585e865916923a34bfc5eb44db24f06c42aec3b2..0000000000000000000000000000000000000000
--- a/conda/js/src/components/ValidSchemaBadge.jsx
+++ /dev/null
@@ -1,30 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Badge,
-} from 'reactstrap';
-
-import Validate, { VALIDATORS } from '@helpers/schema';
-import type { BeatObject, BeatEntity } from '@helpers/beat';
-
-type Props = {
- entity: BeatEntity,
- obj: BeatObject,
-};
-
-const ValidSchemaBadge = (props: Props) => {
- const errs = Validate(VALIDATORS[props.entity], props.obj);
- const isValid = !errs;
-
- if(!isValid){
- //console.log(errs);
- }
-
- return (
- <Badge className='ml-1' color={isValid ? 'success' : 'danger'}>
- {isValid ? 'Valid' : 'Invalid'}
- </Badge>
- );
-};
-
-export default ValidSchemaBadge;
diff --git a/conda/js/src/components/ValidSchemaBadge.spec.jsx b/conda/js/src/components/ValidSchemaBadge.spec.jsx
deleted file mode 100644
index 866e1f3bba6cf1a7fac3cef6395d1b99ae106b96..0000000000000000000000000000000000000000
--- a/conda/js/src/components/ValidSchemaBadge.spec.jsx
+++ /dev/null
@@ -1,207 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '../../test';
-
-import C from './ValidSchemaBadge.jsx';
-
-import testAlgs from '@test/test_algs.json';
-import testLibs from '@test/test_libs.json';
-import testDfs from '@test/test_dfs.json';
-import testDbs from '@test/test_dbs.json';
-
-describe('<ValidSchemaBadge />', () => {
- let wrapper;
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- describe('should accept', () => {
- describe('database', () => {
- const dbs = [
- {
- name: 'test/test/1',
- contents: {
- 'root_folder': '/testing',
- description: 'this is the basic test case for database schema validation',
- protocols: [
- {
- name: 'protocol_1',
- template: 'template_1',
- sets: [
- {
- name: 'set_1',
- view: 'view_1',
- template: 'set_template_1',
- parameters: {
- param1: 'i dont know what these are'
- },
- outputs: {
- output_1: 'a/specific_dataformat/1',
- }
- }
- ]
- }
- ]
- }
- }
- ].concat(testDbs);
-
- dbs.forEach(function(db) {
- it(`${ db.name }`, () => {
- wrapper = mount(<C entity='database' obj={db} />);
- expect(wrapper.find('Badge')).to.have.prop('color', 'success');
- });
- });
- });
-
- describe('algorithm', () => {
- const algs = [
- {
- name: 'test/non-analyzer-alg/1',
- contents: {
- language: 'python',
- description: 'A basic algorithm as a sanity test for the AlgorithmEditor',
- groups: [
- {
- name: 'group_1',
- inputs: {
- 'input_1': { type: 'test/df/1' },
- },
- outputs: {
- 'output_1': { type: 'test/df/2' },
- },
- }
- ],
- uses: {
- 'library_1': 'a/lib/1',
- },
- parameters: {
- 'parameter_1': {
- type: 'string',
- choice: [
- 'choice_1',
- 'choice_2',
- 'choice_3',
- ],
- default: 'choice_1',
- }
- },
- // non-analyzer
- splittable: false,
- }
- }
- ].concat(testAlgs);
-
- algs.forEach(function(alg) {
- it(`${ alg.name }`, () => {
- wrapper = mount(<C entity='algorithm' obj={alg} />);
- expect(wrapper.find('Badge')).to.have.prop('color', 'success');
- });
- });
- });
-
- describe('dataformat', () => {
- const dfs = [
- {
- name: 'test/df/1',
- contents: {
- 'field_1': 'string',
- }
- }
- ].concat(testDfs);
-
- dfs.forEach(function(df) {
- it(`${ df.name }`, () => {
- wrapper = mount(<C entity='dataformat' obj={df} />);
- expect(wrapper.find('Badge')).to.have.prop('color', 'success');
- });
- });
- });
- describe('library', () => {
- const libs = [
- {
- name: 'test/lib/1',
- contents: {
- language: 'python',
- }
- }
- ].concat(testLibs);
-
- libs.forEach(function(lib) {
- it(`${ lib.name }`, () => {
- wrapper = mount(<C entity='library' obj={lib} />);
- expect(wrapper.find('Badge')).to.have.prop('color', 'success');
- });
- });
- });
- });
-
- describe('should reject', () => {
- describe('database', () => {
- const dbs = [
- {
- name: 'test/test/1',
- contents: {
- 'root_folder': '/testing',
- description: 'this is the basic test case for database schema validation',
- protocols: [
- {
- name: 'protocol_1',
- template: 'template_1',
- sets: [
- {
- name: 'set_1',
- view: 'view_1',
- template: 'set_template_1',
- parameters: {
- param1: 'i dont know what these are'
- },
- outputs: {
- output_1: 'a/wrong/output',
- }
- }
- ]
- }
- ]
- }
- },
- {
- name: 'test/test/1',
- contents: {
- description: 'this is the basic test case for database schema validation',
- protocols: [
- {
- name: 'protocol_1',
- template: 'template_1',
- sets: [
- {
- name: 'set_1',
- view: 'view_1',
- template: 'set_template_1',
- parameters: {
- param1: 'i dont know what these are'
- },
- outputs: {
- output_1: 'a/wrong/output',
- }
- }
- ]
- }
- ]
- }
- }
- ];
-
- dbs.forEach(function(db) {
- it(`${ db.name }`, () => {
- wrapper = mount(<C entity='database' obj={db} />);
- expect(wrapper.find('Badge')).to.have.prop('color', 'danger');
- });
- });
- });
- });
-});
diff --git a/conda/js/src/components/algorithm/AlgorithmEditor.jsx b/conda/js/src/components/algorithm/AlgorithmEditor.jsx
deleted file mode 100644
index 2318f550331f469e342df893293d8e80a53a6195..0000000000000000000000000000000000000000
--- a/conda/js/src/components/algorithm/AlgorithmEditor.jsx
+++ /dev/null
@@ -1,729 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Row,
- Col,
- Button,
- Form, FormGroup,
- Label, Input,
- Card, CardHeader, CardBody,
- TabContent, TabPane, Nav, NavItem, NavLink,
- Alert,
- UncontrolledDropdown, DropdownToggle, DropdownMenu,
- InputGroup, InputGroupAddon,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import cn from 'classnames';
-
-import { changeObjFieldName, generateNewKey, copyObj } from '@helpers';
-import { algorithmValidator, BUILTIN_TYPES, ANALYZER_RESULT_TYPES, getValidAlgorithmObj as getValidObj } from '@helpers/beat';
-import type { AlgorithmValidatorObject, BeatObject } from '@helpers/beat';
-
-import * as Selectors from '@store/selectors.js';
-
-import * as Actions from '@store/actions.js';
-import CacheInput from '../CacheInput.jsx';
-import ValidSchemaBadge from '../ValidSchemaBadge.jsx';
-import DeleteInputBtn from '../DeleteInputBtn.jsx';
-import TypedField from '../TypedField.jsx';
-import TemplateButton from '../EntityTemplateGenerationButton.jsx';
-import InfoTooltip from '../InfoTooltip.jsx';
-import ParameterCreate from '../ParameterCreate.jsx';
-
-type Props = {
- data: BeatObject,
- algorithms: BeatObject[],
- libraries: BeatObject[],
- dataformats: BeatObject[],
- saveFunc: (BeatObject) => any,
- updateFunc: (BeatObject) => any,
-};
-
-type State = {
- // which tab the user is viewing (endpoints, params, etc.)
- activeTab: string,
- // algorithm-specific validity checking (alerts for common errors & warnings)
- validity: AlgorithmValidatorObject,
- // parameters can restrict their values to individual choices
- // this string represents a choice that is being edited
- choiceCache: string,
-};
-
-// represents an input or output value
-// inputs/outputs are just an object with a "type" field
-type IOEntry = {|
- type: string,
-|};
-
-// represents a collection of inputs/outputs
-type IOObject = {
- [string]: IOEntry,
-};
-
-// represents a group/endpoint, optionally with outputs
-type Group = {
- name: string,
- inputs: IOObject,
- outputs?: IOObject,
-};
-
-export class AlgorithmEditor extends React.Component<Props, State> {
- constructor(props: Props) {
- //console.log(`Creating AlgDetail`);
- super(props);
- }
-
- state = {
- activeTab: '0',
- validity: algorithmValidator(this.props.data, this.props.algorithms),
- choiceCache: '',
- }
-
- // if the data changes behind the scenes, update the editor with these changes
- componentDidUpdate = (prevProps: Props) => {
- if(this.props !== prevProps){
- this.setState({
- validity: this.getValidity(this.props.data, this.props.algorithms),
- });
- }
- }
-
- // get the result types (analyzer result types are restricted to a subset of all available types)
- getResultDfs = (): string[] => ANALYZER_RESULT_TYPES.concat(this.props.dataformats.filter(d => d.name.startsWith('plot')).map(d => d.name))
-
- // returns a validity object based on the given algorithm cache and list of all algorithms
- getValidity = (cache: BeatObject = this.props.data, algs: BeatObject[] = this.props.algorithms): AlgorithmValidatorObject => {
- return algorithmValidator(cache, algs.filter(o => o !== this.props.data));
- }
-
- // much like getValidity but just returns a bool
- // doesnt worry about warnings, just errors
- isValid = (cache: BeatObject): boolean => {
- const isValid = Object.entries(this.getValidity(cache))
- .filter(([name, bool]) => name !== (this.isAnalyzer() ? 'endpoint0OutputExists' : 'result0Exists'))
- .reduce((bool, [name, b]): boolean => (!!b) && bool, true)
- ;
-
- return isValid;
- }
-
- // change the tab
- tabTo = (tab: string) => { if(this.state.activeTab !== tab) this.setState({ activeTab: tab }); }
-
- // is the algorithm an analyzer?
- // theres no flag set, so instead check for the existence of a 'splittable' field which only normal algorithms have
- isAnalyzer = (): boolean => { return !Object.keys(this.props.data.contents).includes('splittable'); }
-
- // helper to change a value in the "contents" subobject of an algorithm
- // (this is where the vast majority of change happens)
- changeContentsVal = (field: string, val: any) => {
- const newCache = {
- ...this.props.data,
- contents: {
- ...this.props.data.contents,
- [field]: val
- }
- };
-
- this.props.updateFunc(newCache);
- }
-
- // updates an old group object to a new group object
- updateGroup = (oldGroup: Group, newGroup: Group) => {
- const gIdx = this.props.data.contents.groups.findIndex(g => JSON.stringify(g) === JSON.stringify(oldGroup));
- const newGroups = copyObj(this.props.data.contents.groups);
- newGroups[gIdx] = newGroup;
- this.changeContentsVal('groups', newGroups);
- }
-
- // 4 different functions:
- // creates a parameter (provide name & value)
- // updates a parameter (provide name & value)
- // renames a parameter (provide name & value & the old name)
- // deletes a parameter (provide null as name, value is optional, the name)
- updateParameter = (name: null | string, value: any, oldName: ?string) => {
- const params = copyObj(this.props.data.contents.parameters);
- if(oldName)
- delete params[oldName];
- if(name !== null)
- params[name] = value;
- this.changeContentsVal('parameters', params);
- }
-
- // updates a result given the result name and the value obj
- updateResult = (name: string, res: any) => {
- const rs = this.props.data.contents.results;
- rs[name] = res;
- this.changeContentsVal('results', rs);
- }
-
- // toggles the algorithm to an analyzer algorithm
- changeToAnalyzer = () => {
- const contents = copyObj(this.props.data.contents);
- contents.groups = contents.groups.map(g => {
- delete g['outputs'];
- return g;
- });
- contents.results = {};
- delete contents['splittable'];
-
- const newCache = {
- ...this.props.data,
- contents
- };
-
- this.props.updateFunc(newCache);
- }
-
- // toggles the algorithm to a normal algorithm
- changeToNormal = () => {
- const contents = copyObj(this.props.data.contents);
- delete contents.results;
- if(contents.groups.length > 0)
- contents.groups[0].outputs = {};
- contents.splittable = false;
-
- const newCache = {
- ...this.props.data,
- contents
- };
-
- this.props.updateFunc(newCache);
- }
-
- // generates a func from a given group & type that takes an input/output name
- // and deletes it from the group
- deleteIO = (group: Group, type: 'inputs' | 'outputs') => (name: string) => {
- if(!group[type])
- return;
- delete group[type][name];
- this.updateGroup(group, { ...group });
- }
-
- // rendergs the endpoints tab
- renderEndpoints = () => (
- <TabPane tabId='0'>
- {
- // loop through all groups in the alg
- this.props.data.contents.groups.map((group: Group, i, groups: Group[]) => {
- // func to update an input/output
- // lets you change the name and/or the type
- const ioUpdate = (subObj: 'inputs' | 'outputs') => (oldName: string, newName: string, newObj: IOEntry) => {
- const changedObj = changeObjFieldName(group[subObj], oldName, newName);
- changedObj[newName] = newObj;
- this.updateGroup(group,
- {
- ...group,
- [subObj]: changedObj
- }
- );
- };
-
- const inputsUpdate = ioUpdate('inputs');
- const outputsUpdate = ioUpdate('outputs');
-
- return (
- <Row key={i} className='mb-2' id={`endpoint${ i }`}>
- <Col sm='12'>
- <Card>
- { groups.length > 1 &&
- <CardHeader>
- Group { i }
- </CardHeader>
- }
- <CardBody>
- { Object.keys(group.inputs).length === 0 && i !== 0 &&
- <Alert color='warning'>
- In general, an endpoint group should have at least 1 input.
- </Alert>
- }
- <Row>
- <Col sm={group.outputs ? '6' : '12'}>
- {
- (Object.entries(group.inputs): [string, any][])
- .map(([name, ioObj], i, gEntries) =>
- <TypedField
- className='algInput'
- key={i}
- name={name}
- type={ioObj.type}
- types={this.props.dataformats.map(d => d.name)}
- existingFields={gEntries.map(([n, v]) => n)}
- nameUpdateFunc={str => inputsUpdate(name, str, ioObj)}
- typeUpdateFunc={str => inputsUpdate(
- name,
- name,
- { type: str }
- )}
- deleteFunc={() => this.deleteIO(group, 'inputs')(name)}
- />
- )
- }
- <Button outline block
- id='newInputBtn'
- onClick={(e) => {
- const newKey = generateNewKey('input', Object.keys(group.inputs));
- this.updateGroup(
- group,
- {
- ...group,
- inputs: {
- ...group.inputs,
- [newKey]: { type: '' }
- }
- }
- );
- }}
- >
- New Input
- </Button>
- </Col>
- { group.outputs && (
- <Col sm='6'>
- {
- (Object.entries(group.outputs): [string, any][])
- .map(([name, ioObj], i, gEntries) =>
- <TypedField
- className='algOutput'
- key={i}
- name={name}
- type={ioObj.type}
- types={this.props.dataformats.map(d => d.name)}
- existingFields={gEntries.map(([n, v]) => n)}
- nameUpdateFunc={str => outputsUpdate(name, str, ioObj)}
- typeUpdateFunc={str => outputsUpdate(
- name,
- name,
- { type: str }
- )}
- deleteFunc={() => this.deleteIO(group, 'outputs')(name)}
- />
- )
- }
- <Button outline block
- id='newOutputBtn'
- onClick={(e) => {
- const newKey = generateNewKey('output', Object.keys(group.outputs));
- this.updateGroup(
- group,
- {
- ...group,
- outputs: {
- ...group.outputs,
- [newKey]: { type: '' }
- }
- }
- );
- }}
- >
- New Output
- </Button>
- </Col>
- )}
- </Row>
- </CardBody>
- { i !== 0 &&
- <Button block color='danger' outline
- onClick={() => this.changeContentsVal(
- 'groups',
- groups
- .filter(g => g.name !== group.name)
- )}
- >
- Delete Group
- </Button>
- }
- </Card>
- </Col>
- </Row>
- );
- })
- }
- <Button block
- id='newGroupBtn'
- onClick={(e) => {
- const newGroupName = generateNewKey('group', this.props.data.contents.groups.map(g => g.name));
- const newGroup = {
- name: newGroupName,
- inputs: {},
- };
- if(!this.isAnalyzer() && this.props.data.contents.groups.length === 0)
- newGroup.outputs = {};
-
- this.changeContentsVal(
- 'groups',
- [... this.props.data.contents.groups, newGroup ]
- );
- }}
- >
- New Group
- </Button>
- </TabPane>
- );
-
- // renders the parameters tab
- renderParameters = () => {
- return (
- <TabPane tabId='1'>
- {
- // loop through all the parameters
- (Object.entries(this.props.data.contents.parameters): [string, any][]).map(([name, param], i, params) => (
- <Row key={i} className='mb-2'>
- <Col sm='12'>
- <ParameterCreate
- name={name}
- param={param}
- params={params}
- updateParameter={this.updateParameter}
- />
- </Col>
- </Row>
- ))
- }
- <Button outline block
- id='newParameterBtn'
- onClick={() => {
- const newKey = generateNewKey('parameter', Object.keys(this.props.data.contents.parameters || {}));
- this.changeContentsVal('parameters',
- {
- ...(this.props.data.contents.parameters || {}),
- [newKey]: {
- type: '',
- default: '',
- description: '',
- }
- }
- );
- }}
- >
- New Parameter
- </Button>
- </TabPane>
- );
- }
-
- // renders the libraries tab
- renderLibraries = () => (
- <TabPane tabId='2'>
- <Row>
- <Col sm='12'>
- {
- // loop through all the used libs
- (Object.entries(this.props.data.contents.uses): [string, any][])
- .map(([name, lib], i, lEntries) => (
- <TypedField
- key={i}
- name={name}
- type={lib}
- types={this.props.libraries.map(l => l.name)}
- existingFields={lEntries.map(([n, v]) => n)}
- nameUpdateFunc={str => {
- // update the alias
- this.changeContentsVal('uses',
- changeObjFieldName(
- this.props.data.contents.uses,
- name,
- str
- )
- );
- }}
- typeUpdateFunc={str => {
- // update the chosen library for the alias
- const libs = {
- ...this.props.data.contents.uses,
- [name]: str
- };
- this.changeContentsVal('uses', libs);
- }}
- deleteFunc={() => {
- const libs = { ...this.props.data.contents.uses };
- delete libs[name];
- this.changeContentsVal('uses', libs);
- }}
- />
- ))
- }
- </Col>
- </Row>
- <Button outline block
- id='newLibraryBtn'
- onClick={() => {
- const newKey = generateNewKey('library', Object.keys(this.props.data.contents.uses));
- this.changeContentsVal('uses',
- {
- ...this.props.data.contents.uses,
- [newKey]: ''
- }
- );
- }}
- >
- New Library
- </Button>
- </TabPane>
- );
-
- // renders the results tab (only if the alg is an analyzer)
- renderResults = () => (
- <TabPane tabId='3'>
- {
- // loop through results
- (Object.entries(this.props.data.contents.results): [string, any][])
- .map(([name, result], i, rEntries) => (
- <TypedField
- key={i}
- name={name}
- type={result.type}
- types={this.getResultDfs()}
- existingFields={rEntries.map(([n, v]) => n)}
- nameUpdateFunc={str => this.changeContentsVal(
- 'results',
- changeObjFieldName(
- this.props.data.contents.results,
- name,
- str
- )
- )}
- typeUpdateFunc={str => this.updateResult(name,
- {
- ...result,
- type: str
- }
- )}
- deleteFunc={() => {
- const newRes = {
- ...this.props.data.contents.results
- };
- delete newRes[name];
- this.changeContentsVal(
- 'results',
- newRes
- );
- }}
- >
- <Col>
- {/* display by default checkbox */}
- <Label check>
- <Input
- type='checkbox'
- value={result.display ? true : false}
- onChange={(e) => this.changeContentsVal(
- 'results',
- { ...this.props.data.contents.results,
- [name] : {
- ...result,
- display: e.target.checked
- }
- })
- }
- />
- {' '}
- <span>Display By Default</span>
- </Label>
- </Col>
- </TypedField>
- ))
- }
- <Button outline block
- id='newResultBtn'
- onClick={() => {
- const newKey = generateNewKey('result', Object.keys(this.props.data.contents.results));
- this.changeContentsVal(
- 'results',
- {...this.props.data.contents.results,
- [newKey]: {
- display: false,
- type: ''
- }
- }
- );
- }}
- >
- New Result
- </Button>
- </TabPane>
- );
-
- render = () => (
- <div>
- {/* header content (save button & template gen button) */}
- <div className='d-flex'>
- <Button
- className='mx-auto'
- outline
- color='secondary'
- onClick={() => this.props.saveFunc(this.props.data)}
- >
- Save Changes (Changes are <ValidSchemaBadge entity='algorithm' obj={this.props.data} />)
- </Button>
- <TemplateButton
- data={this.props.data}
- entity={'algorithm'}
- />
- </div>
- {/* simple universal stuff - description, what type of alg, if its splittable */}
- <Form>
- <React.Fragment>
- <FormGroup tag='fieldset'>
- <FormGroup>
- <Label for='algDesc'>Short Description</Label>
- <Input
- type='text'
- name='desc'
- id='algDesc'
- placeholder='Algorithm description...'
- value={this.props.data.contents.description}
- onChange={(e) => this.changeContentsVal('description', e.target.value)}
- />
- </FormGroup>
- <FormGroup check>
- <Label check>
- <Input
- id='algAnalyzer'
- type='checkbox'
- checked={this.isAnalyzer()}
- onChange={e => e.target.checked ? this.changeToAnalyzer() : this.changeToNormal()}
- />{' '}
- <InfoTooltip
- id='analyzerTooltip'
- info={`Checking this option makes this algorithm an "analyzer". Analyzers are made to analyze the experiment's performance (and other characteristics). Experiments must have 1 and only analyzer at the end of the experiment's toolchain. These types of algorithms produce evalution data for the user, such as plots, scores, and statistics.`}
- >
- Analyser
- </InfoTooltip>
- </Label>
- </FormGroup>
- { !this.isAnalyzer() &&
- <FormGroup check>
- <Label check>
- <Input
- id='algSplittable'
- type='checkbox'
- checked={this.props.data.contents.splittable ? true : false}
- onChange={e => this.changeContentsVal('splittable', e.target.checked)}
- />{' '}
- <InfoTooltip
- id='splittableTooltip'
- info={`A non-analyzer algorithm may be decided to be "splittable". Being splittable means that multiple instances of the algorithm may be ran in parallel on different bits of input. Non-splittable algorithms usually have some sort of aggregation/cross-input activity. Most algorithms will be splittable, but it is much easier to debug an algorithm with it being non-splittable.`}
- >
- Splittable
- </InfoTooltip>
- </Label>
- </FormGroup>
- }
- </FormGroup>
- {/* most errors/warnings from the current AlgorithmValidator object are displayed here */}
- {
- (!this.isAnalyzer() || this.getValidity().result0Exists) ||
- <Alert color='danger'>
- You need at least 1 result from an Analyzer.
- </Alert>
- }
- {
- this.getValidity().endpoint0Exists ||
- <Alert color='danger'>
- You need at least 1 endpoint group.
- </Alert>
- }
- {
- (this.isAnalyzer() || this.getValidity().endpoint0OutputExists) ||
- <Alert color='danger'>
- You must have at least 1 output
- in the first endpoint group.
- </Alert>
- }
- {
- this.getValidity().endpoint0InputExists ||
- <Alert color='danger'>
- You need at least 1 input in the first endpoint group.
- </Alert>
- }
- {/* all the tabs: endpoints, params, libs, results */}
- <Nav tabs className='mt-3 mb-3'>
- <NavItem>
- <NavLink
- className={cn({ active: this.state.activeTab === '0' })}
- onClick={() => this.tabTo('0')}
- >
- <InfoTooltip
- id='endpointTooltip'
- info={`Endpoints are groups of inputs & outputs. An algorithm can have multiple endpoints (and must have at least 1), but each endpoint must have at least 1 input. If the algorithm is an analyzer, no groups can have outputs. If it is not an analyzer, only the first endpoint can have outputs, and at least 1 output is required.`}
- >
- Endpoints
- </InfoTooltip>
- </NavLink>
- </NavItem>
- <NavItem>
- <NavLink
- className={cn({ active: this.state.activeTab === '1' })}
- onClick={() => this.tabTo('1')}
- >
- <InfoTooltip
- id='parametersTooltip'
- info={`Parameters are completely optional, allowing for users to change the functionality of the block when configuring an experiment. Parameters lend themselves to building reusable and flexible blocks. For example, a parameter could allow configuring the number of components in PCA, or choosing kernels/kernel parameters for an SVM.`}
- >
- Parameters
- </InfoTooltip>
- </NavLink>
- </NavItem>
- <NavItem>
- <NavLink
- className={cn({ active: this.state.activeTab === '2' })}
- onClick={() => this.tabTo('2')}
- >
- <InfoTooltip
- id='libraryTooltip'
- info={`Libraries provide DRYness to code development for objects in the BEAT platform. Libraries are groups of functions under a given namespace. You may use libraries by adding it to your algorithm and referencing the namespace in your algorithm by the nickname you provide here.`}
- >
- Libraries
- </InfoTooltip>
- </NavLink>
- </NavItem>
- { this.isAnalyzer() &&
- <NavItem>
- <NavLink
- className={cn({ active: this.state.activeTab === '3' })}
- onClick={() => this.tabTo('3')}
- >
- <InfoTooltip
- id='resultsTooltip'
- info={`Results are only for analyzer algorithms. They are similar to outputs in normal algorithms, but provide evaluation information on the whole experiment instead of output data to be processed by another block. Examples are plot data (for example, data for an ROC curve), scores, and statistics.`}
- >
- Results
- </InfoTooltip>
- </NavLink>
- </NavItem>
- }
- </Nav>
- <TabContent className='mb-3' activeTab={this.state.activeTab}>
- { this.renderEndpoints() }
- { this.renderParameters() }
- { this.renderLibraries() }
- { this.props.data.contents.results && this.renderResults() }
- </TabContent>
- </React.Fragment>
- </Form>
- </div>
- );
-}
-
-const mapStateToProps = (state, ownProps) => {
- const algs = Selectors.algorithmGet(state);
- const obj = {
- algorithms: algs,
- libraries: Selectors.libraryGet(state),
- dataformats: Selectors.dataformatGet(state),
- data: algs[ownProps.index] || getValidObj()
- };
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- console.log(`dispatching for ${ obj.name }`);
- dispatch(Actions[`algorithmUpdate`](obj.name, obj));
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(AlgorithmEditor);
diff --git a/conda/js/src/components/algorithm/AlgorithmEditor.spec.jsx b/conda/js/src/components/algorithm/AlgorithmEditor.spec.jsx
deleted file mode 100644
index 446093add5cfd621312af4302d281a43d781f6c9..0000000000000000000000000000000000000000
--- a/conda/js/src/components/algorithm/AlgorithmEditor.spec.jsx
+++ /dev/null
@@ -1,691 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import { AlgorithmEditor as C } from '.';
-import { getValidAlgorithmObj as getValidObj } from '@helpers/beat';
-
-import testAlgs from '@test/test_algs.json';
-import testDfs from '@test/test_dfs.json';
-import testLibs from '@test/test_libs.json';
-
-const libs = [];
-const dfs = [];
-
-describe('<AlgorithmEditor />', () => {
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- describe('accepts', () => {
- const algs = [
- {
- name: 'test/non-analyzer-alg/1',
- contents: {
- language: 'python',
- description: 'A basic algorithm as a sanity test for the AlgorithmEditor',
- groups: [
- {
- name: 'group_1',
- inputs: {
- 'input_1': { type: 'test/df/1' },
- },
- outputs: {
- 'output_1': { type: 'test/df/2' },
- },
- }
- ],
- uses: {
- 'library_1': 'a/lib/1',
- },
- parameters: {
- 'parameter_1': {
- type: 'string',
- choice: [
- 'choice_1',
- 'choice_2',
- 'choice_3',
- ],
- default: 'choice_1',
- }
- },
- // non-analyzer
- splittable: false,
- }
-
- }
- ].concat(testAlgs.map(a => getValidObj(a)));
-
- algs.forEach(function(alg){
- const saveFunc = () => {};
- const updateFunc = () => {};
- it(`${ alg.name }`, () => {
- wrapper = mount(
- <C
- data={getValidObj(alg)}
- algorithms={algs}
- dataformats={dfs}
- libraries={libs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'algorithms', 'dataformats', 'libraries', 'saveFunc', 'updateFunc']
- ).deep.equal(
- [alg, algs, dfs, libs, saveFunc, updateFunc]
- );
- });
- });
- });
-
- describe('creates', () => {
- it('user/integers_echo/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const algName = 'user/integers_echo/1';
- wrapper = mount(
- <C
- data={getValidObj({name: algName, contents: {}})}
- algorithms={[]}
- dataformats={testDfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'algorithms', 'dataformats', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', algName);
-
- wrapper.find('#algSplittable input').prop('onChange')( { target: { checked: true }});
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.property('splittable', true);
-
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.property('groups').with.lengthOf(1);
- expect(wrapper.props().data.contents.groups[0]).to.have.property('inputs');
- expect(wrapper.props().data.contents.groups[0]).to.have.property('outputs');
-
- expect(wrapper.props().data.contents.groups[0]).to.have.property('name', 'group');
-
- wrapper.find('button#newInputBtn').simulate('click');
- expect(updateFunc.callCount).to.equal(2);
- wrapper.find('button#newOutputBtn').simulate('click');
- expect(updateFunc.callCount).to.equal(3);
-
- wrapper.find('.algInput').find('CacheInput').prop('onChange')( { target: { value: 'in_data' }});
- expect(updateFunc.callCount).to.equal(4);
- wrapper.find('.algOutput').find('CacheInput').prop('onChange')( { target: { value: 'out_data' }});
- expect(updateFunc.callCount).to.equal(5);
-
- const ioType = 'system/integer/1';
- wrapper.find('.algInput select').prop('onChange')( { target: { value: ioType }});
- expect(updateFunc.callCount).to.equal(6);
- wrapper.find('.algOutput select').prop('onChange')( { target: { value: ioType }});
- expect(updateFunc.callCount).to.equal(7);
-
- expect(wrapper.props().data.contents.groups[0].inputs).to.have.deep.property('in_data', { type: ioType });
- expect(wrapper.props().data.contents.groups[0].outputs).to.have.deep.property('out_data', { type: ioType });
-
- expect(wrapper.props().data.contents).to.deep.equal({
- description: '',
- 'groups': [
- {
- 'inputs': {
- 'in_data': {
- 'type': 'system/integer/1'
- }
- },
- 'name': 'group',
- 'outputs': {
- 'out_data': {
- 'type': 'system/integer/1'
- }
- }
- }
- ],
- parameters: {},
- uses: {},
- 'splittable': true,
- 'language': 'python'
- });
- });
-
- it('user/integers_add/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const algName = 'user/integers_add/1';
- wrapper = mount(
- <C
- data={getValidObj({name: algName, contents: {}})}
- algorithms={[]}
- dataformats={testDfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'algorithms', 'dataformats', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', algName);
-
- wrapper.find('#algSplittable input').prop('onChange')( { target: { checked: true }});
- expect(wrapper.props().data.contents).to.have.property('splittable', true);
-
- expect(wrapper.props().data.contents).to.have.property('groups').with.lengthOf(1);
- expect(wrapper.props().data.contents.groups[0]).to.have.property('inputs');
- expect(wrapper.props().data.contents.groups[0]).to.have.property('outputs');
-
- expect(wrapper.props().data.contents.groups[0]).to.have.property('name', 'group');
-
- wrapper.find('button#newInputBtn').simulate('click');
- wrapper.find('button#newOutputBtn').simulate('click');
-
- wrapper.find('.algInput').find('CacheInput').prop('onChange')( { target: { value: 'in_data' }});
- wrapper.find('.algOutput').find('CacheInput').prop('onChange')( { target: { value: 'out_data' }});
-
- const ioType = 'system/integer/1';
- wrapper.find('.algInput select').prop('onChange')( { target: { value: ioType }});
- wrapper.find('.algOutput select').prop('onChange')( { target: { value: ioType }});
-
- expect(wrapper.props().data.contents.groups[0].inputs).to.have.deep.property('in_data', { type: ioType });
- expect(wrapper.props().data.contents.groups[0].outputs).to.have.deep.property('out_data', { type: ioType });
-
- wrapper.find('a')
- .findWhere(w => {
- const html = w.html();
- return html && html.includes('Parameters');
- })
- .at(0)
- .simulate('click');
-
- wrapper.find('button#newParameterBtn').simulate('click');
-
- wrapper.find('CacheInput[placeholder="Parameter name..."]').prop('onChange')( { target: { value: 'offset' }});
- wrapper.find('[tabId="1"] select').prop('onChange')( { target: { value: 'int32' }});
- wrapper.find('input[placeholder="Default"]').simulate('change', { target: { value: '1' }});
-
- expect(wrapper.props().data.contents.parameters).to.have.deep.property('offset', {
- 'default': '1',
- 'type': 'int32',
- 'description': '',
- });
-
- wrapper.find('a')
- .findWhere(w => {
- const html = w.html();
- return html && html.includes('Libraries');
- })
- .at(0)
- .simulate('click');
-
- wrapper.find('button#newLibraryBtn').simulate('click');
-
- wrapper.find('[tabId="2"] CacheInput[type="text"]').prop('onChange')( { target: { value: 'lib' }});
- wrapper.find('[tabId="2"] select').prop('onChange')( { target: { value: 'user/thelib/1' }});
-
- expect(wrapper.props().data.contents.uses).to.have.property('lib', 'user/thelib/1');
-
- expect(wrapper.props().data.contents).to.deep.equal({
- description: '',
- 'groups': [
- {
- 'inputs': {
- 'in_data': {
- 'type': 'system/integer/1'
- }
- },
- 'name': 'group',
- 'outputs': {
- 'out_data': {
- 'type': 'system/integer/1'
- }
- }
- }
- ],
- 'parameters': {
- 'offset': {
- 'default': '1',
- 'type': 'int32',
- description: '',
- }
- },
- 'uses': {
- 'lib': 'user/thelib/1'
- },
- 'splittable': true,
- 'language': 'python'
- });
- });
-
- it('user/integers_echo_analyzer/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const algName = 'user/integer_echo_analyzer/1';
- wrapper = mount(
- <C
- data={getValidObj({name: algName, contents: {}})}
- algorithms={[]}
- dataformats={testDfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'algorithms', 'dataformats', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', algName);
-
- wrapper.find('#algAnalyzer input').prop('onChange')( { target: { checked: true }});
- expect(wrapper.props().data.contents).to.have.property('results');
-
- expect(wrapper.props().data.contents).to.have.property('groups').with.lengthOf(1);
- expect(wrapper.props().data.contents.groups[0]).to.have.property('inputs');
- expect(wrapper.props().data.contents.groups[0]).to.not.have.property('outputs');
-
- expect(wrapper.props().data.contents.groups[0]).to.have.property('name', 'group');
-
- wrapper.find('button#newInputBtn').simulate('click');
-
- wrapper.find('.algInput').find('CacheInput').prop('onChange')( { target: { value: 'in_data' }});
-
- const ioType = 'system/integer/1';
- wrapper.find('.algInput select').prop('onChange')( { target: { value: ioType }});
-
- expect(wrapper.props().data.contents.groups[0].inputs).to.have.deep.property('in_data', { type: ioType });
-
- wrapper.find('a')
- .findWhere(w => {
- const html = w.html();
- return html && html.includes('Results');
- })
- .at(0)
- .simulate('click');
-
- wrapper.find('button#newResultBtn').simulate('click');
- wrapper.find('button#newResultBtn').simulate('click');
- wrapper.find('button#newResultBtn').simulate('click');
- wrapper.find('button#newResultBtn').simulate('click');
-
- wrapper.find('[tabId="3"] CacheInput[type="text"]').at(0).prop('onChange')( { target: { value: 'roc' }});
- wrapper.find('[tabId="3"] select').at(0).prop('onChange')( { target: { value: 'plot/isoroc/1' }});
-
- wrapper.find('[tabId="3"] CacheInput[type="text"]').at(1).prop('onChange')( { target: { value: 'plot' }});
- wrapper.find('[tabId="3"] select').at(1).prop('onChange')( { target: { value: 'plot/scatter/1' }});
-
- wrapper.find('[tabId="3"] CacheInput[type="text"]').at(2).prop('onChange')( { target: { value: 'out_data' }});
- wrapper.find('[tabId="3"] select').at(2).prop('onChange')( { target: { value: 'int32' }});
-
- wrapper.find('[tabId="3"] CacheInput[type="text"]').at(3).prop('onChange')( { target: { value: 'bar_plot' }});
- wrapper.find('[tabId="3"] select').at(3).prop('onChange')( { target: { value: 'plot/bar/1' }});
-
- expect(wrapper.props().data.contents.results).to.deep.equal({
- 'roc': {
- 'type': 'plot/isoroc/1',
- 'display': false
- },
- 'plot': {
- 'type': 'plot/scatter/1',
- 'display': false
- },
- 'out_data': {
- 'type': 'int32',
- 'display': false
- },
- 'bar_plot': {
- 'type': 'plot/bar/1',
- 'display': false
- }
- });
-
- expect(wrapper.props().data.contents).to.deep.equal({
- description: '',
- 'groups': [
- {
- 'inputs': {
- 'in_data': {
- 'type': 'system/integer/1'
- }
- },
- 'name': 'group'
- }
- ],
- parameters: {},
- uses: {},
- 'language': 'python',
- 'results': {
- 'roc': {
- 'type': 'plot/isoroc/1',
- 'display': false
- },
- 'plot': {
- 'type': 'plot/scatter/1',
- 'display': false
- },
- 'out_data': {
- 'type': 'int32',
- 'display': false
- },
- 'bar_plot': {
- 'type': 'plot/bar/1',
- 'display': false
- }
- }
- });
- });
-
- it('user/integers_echo_ignore/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const algName = 'user/integers_echo/1';
- wrapper = mount(
- <C
- data={getValidObj({name: algName, contents: {}})}
- algorithms={[]}
- dataformats={testDfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'algorithms', 'dataformats', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', algName);
-
- wrapper.find('#algSplittable input').prop('onChange')( { target: { checked: true }});
- expect(wrapper.props().data.contents).to.have.property('splittable', true);
-
- wrapper.find('button#newGroupBtn').simulate('click');
-
- expect(wrapper.props().data.contents).to.have.property('groups').with.lengthOf(2);
- expect(wrapper.props().data.contents.groups[0]).to.have.property('inputs');
- expect(wrapper.props().data.contents.groups[0]).to.have.property('outputs');
- expect(wrapper.props().data.contents.groups[1]).to.have.property('inputs');
- expect(wrapper.props().data.contents.groups[1]).to.not.have.property('outputs');
-
- // Group 1
- expect(wrapper.props().data.contents.groups[0]).to.have.property('name', 'group');
-
- wrapper.find('#endpoint0 button#newInputBtn').simulate('click');
- wrapper.find('#endpoint0 button#newOutputBtn').simulate('click');
-
- wrapper.find('#endpoint0 .algInput').find('CacheInput').prop('onChange')( { target: { value: 'in_data' }});
- wrapper.find('#endpoint0 .algOutput').find('CacheInput').prop('onChange')( { target: { value: 'out_data' }});
-
- const ioType = 'system/integer/1';
- wrapper.find('#endpoint0 .algInput select').prop('onChange')( { target: { value: ioType }});
- wrapper.find('#endpoint0 .algOutput select').prop('onChange')( { target: { value: ioType }});
-
- expect(wrapper.props().data.contents.groups[0].inputs).to.have.deep.property('in_data', { type: ioType });
- expect(wrapper.props().data.contents.groups[0].outputs).to.have.deep.property('out_data', { type: ioType });
-
- // Group 2
- expect(wrapper.props().data.contents.groups[1]).to.have.property('name', 'group0');
-
- wrapper.find('#endpoint1 button#newInputBtn').simulate('click');
-
- wrapper.find('#endpoint1 .algInput').find('CacheInput').prop('onChange')( { target: { value: 'in_data2' }});
- wrapper.find('#endpoint1 .algInput select').prop('onChange')( { target: { value: ioType }});
- expect(wrapper.props().data.contents.groups[1].inputs).to.have.deep.property('in_data2', { type: ioType });
-
- expect(wrapper.props().data.contents).to.be.deep.equal({
- description: '',
- 'groups': [
- {
- 'inputs': {
- 'in_data': {
- 'type': 'system/integer/1'
- }
- },
- 'name': 'group',
- 'outputs': {
- 'out_data': {
- 'type': 'system/integer/1'
- }
- }
- },
- {
- 'inputs': {
- 'in_data2': {
- 'type': 'system/integer/1'
- }
- },
- 'name': 'group0'
- }
- ],
- parameters: {},
- uses: {},
- 'splittable': true,
- 'language': 'python'
- });
- });
-
- it('system/integers_echo_sleep/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const algName = 'user/integers_echo_sleep/1';
- wrapper = mount(
- <C
- data={getValidObj({name: algName, contents: {}})}
- algorithms={[]}
- dataformats={testDfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'algorithms', 'dataformats', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', algName);
-
- wrapper.find('#algSplittable input').prop('onChange')( { target: { checked: true }});
- expect(wrapper.props().data.contents).to.have.property('splittable', true);
-
- expect(wrapper.props().data.contents).to.have.property('groups').with.lengthOf(1);
- expect(wrapper.props().data.contents.groups[0]).to.have.property('inputs');
- expect(wrapper.props().data.contents.groups[0]).to.have.property('outputs');
-
- expect(wrapper.props().data.contents.groups[0]).to.have.property('name', 'group');
-
- wrapper.find('button#newInputBtn').simulate('click');
- wrapper.find('button#newOutputBtn').simulate('click');
-
- wrapper.find('.algInput').find('CacheInput').prop('onChange')( { target: { value: 'in_data' }});
- wrapper.find('.algOutput').find('CacheInput').prop('onChange')( { target: { value: 'out_data' }});
-
- const ioType = 'system/integer/1';
- wrapper.find('.algInput select').prop('onChange')( { target: { value: ioType }});
- wrapper.find('.algOutput select').prop('onChange')( { target: { value: ioType }});
-
- expect(wrapper.props().data.contents.groups[0].inputs).to.have.deep.property('in_data', { type: ioType });
- expect(wrapper.props().data.contents.groups[0].outputs).to.have.deep.property('out_data', { type: ioType });
-
- wrapper.find('a')
- .findWhere(w => {
- const html = w.html();
- return html && html.includes('Parameters');
- })
- .at(0)
- .simulate('click');
-
- wrapper.find('button#newParameterBtn').simulate('click');
-
- wrapper.find('CacheInput[placeholder="Parameter name..."]').prop('onChange')( { target: { value: 'delay' }});
- wrapper.find('[tabId="1"] select').prop('onChange')( { target: { value: 'uint32' }});
- wrapper.find('input[placeholder="Default"]').simulate('change', { target: { value: '30' }});
- wrapper.find('input[placeholder="Description"]').simulate('change', { target: { value: 'Time to sleep in seconds' }});
-
- expect(wrapper.props().data.contents.parameters).to.have.deep.property('delay', {
- 'default': '30',
- 'type': 'uint32',
- 'description': 'Time to sleep in seconds',
- });
-
- expect(wrapper.props().data.contents).to.be.deep.equal({
- description: '',
- uses: {},
- 'language': 'python',
- 'splittable': true,
- 'groups': [
- {
- 'name': 'group',
- 'inputs': {
- 'in_data': {
- 'type': 'system/integer/1'
- }
- },
- 'outputs': {
- 'out_data': {
- 'type': 'system/integer/1'
- }
- }
- }
- ],
- 'parameters': {
- 'delay': {
- 'default': '30',
- 'type': 'uint32',
- 'description': 'Time to sleep in seconds'
- }
- }
- });
- });
-
- it('user/integers_mean_analyzer/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const algName = 'user/integers_mean_analyzer/1';
- wrapper = mount(
- <C
- data={getValidObj({name: algName, contents: {}})}
- algorithms={[]}
- dataformats={testDfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'algorithms', 'dataformats', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', algName);
-
- wrapper.find('#algAnalyzer input').prop('onChange')( { target: { checked: true }});
- expect(wrapper.props().data.contents).to.have.property('results');
-
- expect(wrapper.props().data.contents).to.have.property('groups').with.lengthOf(1);
- expect(wrapper.props().data.contents.groups[0]).to.have.property('inputs');
- expect(wrapper.props().data.contents.groups[0]).to.not.have.property('outputs');
-
- expect(wrapper.props().data.contents.groups[0]).to.have.property('name', 'group');
-
- wrapper.find('button#newInputBtn').simulate('click');
-
- wrapper.find('.algInput').find('CacheInput').prop('onChange')( { target: { value: 'in_data' }});
-
- const ioType = 'system/integer/1';
- wrapper.find('.algInput select').prop('onChange')( { target: { value: ioType }});
-
- expect(wrapper.props().data.contents.groups[0].inputs).to.have.deep.property('in_data', { type: ioType });
-
- wrapper.find('a')
- .findWhere(w => {
- const html = w.html();
- return html && html.includes('Results');
- })
- .at(0)
- .simulate('click');
-
- wrapper.find('button#newResultBtn').simulate('click');
- wrapper.find('button#newResultBtn').simulate('click');
-
- wrapper.find('[tabId="3"] CacheInput[type="text"]').at(0).prop('onChange')( { target: { value: 'plot' }});
- wrapper.find('[tabId="3"] select').at(0).prop('onChange')( { target: { value: 'plot/scatter/1' }});
-
- wrapper.find('[tabId="3"] CacheInput[type="text"]').at(1).prop('onChange')( { target: { value: 'out_data' }});
- wrapper.find('[tabId="3"] select').at(1).prop('onChange')( { target: { value: 'float32' }});
-
- expect(wrapper.props().data.contents.results).to.deep.equal({
- 'plot': {
- 'type': 'plot/scatter/1',
- 'display': false,
- },
- 'out_data': {
- 'type': 'float32',
- 'display': false
- },
- });
-
- expect(wrapper.props().data.contents).to.deep.equal({
- description: '',
- uses: {},
- parameters: {},
- 'language': 'python',
- 'groups': [
- {
- name: 'group',
- 'inputs': {
- 'in_data': {
- 'type': 'system/integer/1'
- }
- }
- }
- ],
- 'results': {
- 'out_data': {
- 'type': 'float32',
- 'display': false
- },
- 'plot': {
- 'type': 'plot/scatter/1',
- 'display': false
- }
- }
- });
- });
- });
-
-});
diff --git a/conda/js/src/components/algorithm/index.js b/conda/js/src/components/algorithm/index.js
deleted file mode 100644
index ee4f49289cafcf9885af25b9aec6767fd5c0e390..0000000000000000000000000000000000000000
--- a/conda/js/src/components/algorithm/index.js
+++ /dev/null
@@ -1,8 +0,0 @@
-// @flow
-import ConnectedAlgorithmEditor, {AlgorithmEditor} from './AlgorithmEditor.jsx';
-
-export {
- AlgorithmEditor,
-};
-
-export default ConnectedAlgorithmEditor;
diff --git a/conda/js/src/components/database/DatabaseEditor.css b/conda/js/src/components/database/DatabaseEditor.css
deleted file mode 100644
index 1d5dca69cdd560a30fd44036f0fd5b50c9f4ea19..0000000000000000000000000000000000000000
--- a/conda/js/src/components/database/DatabaseEditor.css
+++ /dev/null
@@ -1,18 +0,0 @@
-.databaseEditor .toc > h4 {
- text-align: center;
-}
-
-.databaseEditor .toc {
- right: 0;
- top: 3em;
- width: calc(50% - (1140px / 2));
- position: fixed;
- overflow-y: auto;
- bottom: 0;
-}
-
-.databaseEditor .toc > .list-group > .list-group-item {
- border-right: none;
- border-top-right-radius: 0;
- border-bottom-right-radius: 0;
-}
diff --git a/conda/js/src/components/database/DatabaseEditor.jsx b/conda/js/src/components/database/DatabaseEditor.jsx
deleted file mode 100644
index 4d90069e023f140b46f36fa3860dae79de4dc0fe..0000000000000000000000000000000000000000
--- a/conda/js/src/components/database/DatabaseEditor.jsx
+++ /dev/null
@@ -1,984 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- Button,
- Form,
- FormGroup,
- Label,
- Input,
- InputGroup,
- FormText,
- Collapse,
- Card,
- CardHeader,
- CardBody,
- TabContent, TabPane, Nav, NavItem, NavLink, CardTitle, CardText,
- FormFeedback,
- Alert,
- InputGroupAddon,
- Dropdown, UncontrolledDropdown, DropdownToggle, DropdownMenu, DropdownItem,
- ButtonGroup,
- ListGroup, ListGroupItem,
- UncontrolledTooltip,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import './DatabaseEditor.css';
-
-import { changeObjFieldName, copyObj } from '@helpers';
-import { getValidDatabaseObj as getValidObj } from '@helpers/beat';
-import type { BeatObject } from '@helpers/beat';
-import fuse from 'fuse.js';
-
-import * as Selectors from '@store/selectors.js';
-
-import * as Actions from '@store/actions.js';
-import ValidSchemaBadge from '../ValidSchemaBadge.jsx';
-import CacheInput from '../CacheInput.jsx';
-import DeleteInputBtn from '../DeleteInputBtn.jsx';
-import TypedField from '../TypedField.jsx';
-import TemplateButton from '../EntityTemplateGenerationButton.jsx';
-import InfoTooltip from '../InfoTooltip.jsx';
-
-
-type Props = {
- data: BeatObject,
- saveFunc: (BeatObject) => any,
- databases: BeatObject[],
- dataformats: BeatObject[],
- updateFunc: (BeatObject) => any,
- protocols: SelectorProtocol[]
-};
-
-export type Protocol = {
- name: string,
- template: string,
- sets: Set[],
-};
-
-// the protocols from the databaseProtocols selector has an additional field
-// that's not in the protocols in database objects
-type SelectorProtocol = Protocol & { database: string };
-
-type State = {
- activeProtocol: number,
- insertProtocolOpen: boolean,
- searchResults: SelectorProtocol[],
-};
-
-export type Set = {
- name: string,
- template: string,
- view: string,
- parameters: {
- [string]: string,
- },
- outputs: {
- [string]: string,
- },
-};
-
-const FuseOptions = {
- shouldSort: true,
- tokenize: true,
- threshold: 0.6,
- location: 0,
- distance: 100,
- maxPatternLength: 32,
- minMatchCharLength: 1,
- keys: ['template'],
-};
-let Fuse;
-
-export class DatabaseEditor extends React.Component<Props, State> {
- constructor(props: Props) {
- super(props);
- }
-
- state = {
- activeProtocol: 0,
- insertProtocolOpen: false,
- searchResults: [],
- }
-
- setContents = (newContents: any) => {
- this.props.updateFunc({
- ...this.props.data,
- contents: {
- 'description': this.props.data.contents['description'],
- ...newContents,
- }
- });
- }
-
- componentDidMount = () => {
- this.updateFuseInstance();
- }
-
- componentDidUpdate = (prevProps: Props, prevState: State) => {
- this.updateFuseInstance(prevProps);
- }
-
- updateFuseInstance = (prevProps?: Props) => {
- // update fuse & reset results if search data changed
- if(!prevProps || this.props.protocols !== prevProps.protocols){
- Fuse = new fuse(this.props.protocols, FuseOptions);
- }
- }
-
- activateProtocol = (index: number) => {
- this.setState({ activeProtocol: index });
- }
-
- updateProtocol = (index: number, obj: Protocol) => {
- this.setContents({
- ...this.props.data.contents,
- protocols: this.props.data.contents.protocols.map((o, i) => i === index ? obj : o)
- });
- }
-
- updateSet = (idxProtocol: number, idxSet: number, obj: Set) => {
- const protocol = this.props.data.contents.protocols[idxProtocol];
- this.updateProtocol(
- idxProtocol,
- {
- ...protocol,
- sets: protocol.sets.map((s, i) => i === idxSet ? obj : s)
- }
- );
- }
-
- toggleInsertProtocol = (val: boolean = !this.state.insertProtocolOpen) => {
- this.setState({ insertProtocolOpen: val });
- };
-
- protocolSearch = (str: string) => {
- const res = Fuse.search(str);
- this.setState(prevState => ({
- searchResults: res.slice(0, 5),
- insertProtocolOpen: res.length > 0,
- }));
- };
-
- // if the protocol template name has any uses with a different protocol makeup,
- // returns the info on all other uses
- validateProtocolTemplate = (protocol: Protocol): null | React.Node => {
- const tName = protocol.template;
- const prots = this.props.protocols.filter(p => p.template === tName);
- // basically a hashmap of all the different protocols using this template name
- // if theres more than one, theres at least two different protocols using the same template name!
- const diffTemplateMap: {[string]: {name: string, database: string}[]} = {};
- prots.forEach(prot => {
- const p = copyObj(prot);
- const pInfo = {
- name: p.name,
- database: p.database,
- };
-
- delete p['name'];
- delete p['database'];
- const json = JSON.stringify(p);
-
- if(Object.keys(diffTemplateMap).includes(json)){
- diffTemplateMap[json].push(pInfo);
- } else {
- diffTemplateMap[json] = [ pInfo ];
- }
- });
-
- const tMapData = Object.entries(diffTemplateMap);
- if(tMapData.length > 1){
- // theres >=2 protocols using the same template name but with different contents
- // get the currently active protocol
- const prot = copyObj(protocol);
- delete prot['name'];
- delete prot['database'];
- const pStr = JSON.stringify(prot);
-
- // print out the protocols that are using the same template name but diff contents
- const TemplateAlert = <Alert color='secondary'>
- <p>
- There are protocols using the same template name but with different contents:
- </p>
- <ul>
- {
- tMapData
- // only protocols with different contents
- .filter(([k, pData]) => k !== pStr)
- // get all the protocols of all the different contents
- .reduce((ps, [k, pData]) => [...ps, ...pData], [])
- .map(({ name, database }, i) => <li key={i}>{`${ name } (${ database })`}</li>)
- }
- </ul>
- </Alert>;
-
- return TemplateAlert;
- } else {
- // valid template useage throughout all dbs
- return null;
- }
- }
-
- renderProtocol = (index: number, protocol: Protocol) => (
- <Container className='protocol'>
- <FormGroup row>
- <Col sm='2'>
- <Label for='protocolName' className='col-form-label'>Name</Label>
- </Col>
- <Col sm='10'>
- <CacheInput
- name='protocolName'
- placeholder='Protocol name...'
- value={protocol.name}
- onChange={(e) => {
- this.updateProtocol(index, {...protocol, name: e.target.value});
- }}
- fieldTest
- />
- </Col>
- </FormGroup>
- <FormGroup row>
- <Col sm='2'>
- <Label for='protocolTemplate' className='col-form-label'>Template Name</Label>
- </Col>
- <Col sm='10'>
- <CacheInput
- name='protocolTemplate'
- placeholder='Protocol Template name...'
- value={protocol.template}
- onChange={(e) => {
- this.updateProtocol(index, {...protocol, template: e.target.value});
- }}
- fieldTest
- />
- </Col>
- </FormGroup>
-
-
- {
- // show an alert about protocol template usage
- this.validateProtocolTemplate(protocol)
- }
-
- <Row className='protocolSets'>
- <Col className='d-flex align-items-center mb-2'>
- <h3 className='mb-0 mr-2'>
- <InfoTooltip
- id='setsTooltip'
- info={`Sets provide different ways to separate the database. For example, one set providing training data and another providing testing data.`}
- >
- Sets
- </InfoTooltip>
- </h3>
- <Button color='success'
- id='newSet'
- onClick={e => {
- const newSets = [...protocol.sets, {
- name: '',
- template: '',
- view: '',
- outputs: {},
- parameters: {},
- }];
-
- this.updateProtocol(
- index,
- {
- ...protocol,
- sets: newSets
- }
- );
- }}
- >
- +
- </Button>
- </Col>
-
- <Col sm='12'>
- {
- protocol.sets.map((currSet, i) =>
- <Row key={i} className={`set${ i }`}>
- <Col>
- <h4>
- { currSet.name }
- {' '}
- <ButtonGroup>
- <Button outline color='danger'
- onClick={e => {
- this.updateProtocol(
- index,
- {
- ...protocol,
- sets: protocol.sets.filter((s, j) => i !== j)
- }
- );
- }}
- >
- Delete
- </Button>
- <Button outline color='secondary'
- onClick={e => {
- const newSets = [...protocol.sets];
- newSets.splice(i + 1, 0, copyObj(currSet));
-
- this.updateProtocol(
- index,
- {
- ...protocol,
- sets: newSets
- }
- );
- }}
- >
- Clone
- </Button>
- </ButtonGroup>
- </h4>
- <FormGroup row>
- <Col>
- <Label for={`setName${ i }`} className='col-form-label'>Name</Label>
- <CacheInput
- name={`setName${ i }`}
- placeholder='Set name...'
- value={currSet.name}
- onChange={(e) => {
- this.updateSet(index, i, {...currSet, name: e.target.value});
- }}
- fieldTest
- />
- </Col>
- <Col>
- <Label for={`setTemplate${ i }`} className='col-form-label'>Template Name</Label>
- <CacheInput
- name={`setTemplate${ i }`}
- placeholder='Set Template name...'
- value={currSet.template}
- onChange={(e) => {
- this.updateSet(index, i, {...currSet, template: e.target.value});
- }}
- fieldTest
- />
- </Col>
- <Col>
- <Label for={`setView${ i }`} className='col-form-label'>
- <InfoTooltip
- id={`view${ i }Tooltip`}
- info={`Every set in a database needs to have a View name assigned to it. This name references a class of the same name in the database's Python file. When data is requested from a set, the View class's code is executed.`}
- >
- View Name
- </InfoTooltip>
- </Label>
- <CacheInput
- name={`setView${ i }`}
- placeholder='Set View name...'
- value={currSet.view}
- onChange={(e) => {
- this.updateSet(index, i, {...currSet, view: e.target.value});
- }}
- fieldTest
- />
- </Col>
- </FormGroup>
- <Container className='setParameters'>
- <Row>
- <Col sm='12'>
- <div className='d-flex align-items-center mb-2'>
- <h5 className='mb-0 mr-2'>
- <InfoTooltip
- id={`parameters${ i }Tooltip`}
- info={`Parameters are simple values that may be passed to the set's View class' "index" method. This lets a single View class support multiple sets by changing functionality based on these parameters.`}
- >
- Parameters
- </InfoTooltip>
- </h5>
- <Button
- color='success'
- className='newParameter'
- onClick={e => {
- let newKey = '';
- let v = 0;
- while(true) {
- const tryKey = `parameter_${ v }`;
- if(Object.keys(currSet.parameters).includes(tryKey)){
- v++;
- continue;
- }
- newKey = tryKey;
- break;
- }
-
- this.updateSet(index, i, {
- ...currSet,
- parameters: {
- ...currSet.parameters,
- [newKey]: ''
- }
- });
- }}
- >
- +
- </Button>
- </div>
- </Col>
- </Row>
- {
- Object.keys(currSet.parameters).length > 0 &&
- <Row>
- <Col sm='6'>
- <h6>Parameter Name</h6>
- </Col>
- <Col sm='6'>
- <h6>Parameter Value</h6>
- </Col>
- </Row>
- }
- {
- ((Object.entries(currSet.parameters): any): [string, string][]).map(([pName, param], j, ps) =>
- <FormGroup row key={j} className={`setParameter${ j }`}>
- <Col sm='6'>
- <CacheInput
- fieldTest
- value={pName}
- onChange={e => {
- const str = e.target.value;
- const newParams = changeObjFieldName(
- currSet.parameters,
- pName,
- str
- );
-
- this.updateSet(index, i,
- {
- ...currSet,
- parameters: newParams
- }
- );
- }}
- >
- <DeleteInputBtn
- deleteFunc={() => {
- const newParameters = { ...currSet.parameters };
- delete newParameters[pName];
-
- this.updateSet(index, i,
- {
- ...currSet,
- parameters: newParameters
- }
- );
- }}
- />
- </CacheInput>
- </Col>
- <Col sm='6'>
- <CacheInput
- fieldTest
- value={param}
- onChange={e => {
- const str = e.target.value;
- this.updateSet(index, i,
- {
- ...currSet,
- parameters: {
- ...currSet.parameters,
- [pName]: str
- }
- }
- );
- }}
-
- />
- </Col>
- </FormGroup>
- )
- }
- </Container>
- <Container className='setOutputs'>
- <Row>
- <Col sm='12'>
- <div className='d-flex align-items-center mb-2'>
- <h5 className='mb-0 mr-2'>
- <InfoTooltip
- id={`outputs${ i }Tooltip`}
- info={`Every set in a database needs at least 1 output. These outputs are of a specific type and provide data to algorithm blocks connected to this output.`}
- >
- Outputs
- </InfoTooltip>
- </h5>
- <Button
- color='success'
- className='newOutput'
- onClick={e => {
- let newKey = '';
- let v = 0;
- while(true) {
- const tryKey = `output_${ v }`;
- if(Object.keys(currSet.outputs).includes(tryKey)){
- v++;
- continue;
- }
- newKey = tryKey;
- break;
- }
-
- this.updateSet(index, i, {
- ...currSet,
- outputs: {
- ...currSet.outputs,
- [newKey]: ''
- }
- });
- }}
- >
- +
- </Button>
- </div>
- </Col>
- </Row>
- {
- Object.keys(currSet.outputs).length > 0 &&
- <Row>
- <Col sm='6'>
- <h6>Output Name</h6>
- </Col>
- <Col sm='6'>
- <h6>Output Type</h6>
- </Col>
- </Row>
- }
- {
- ((Object.entries(currSet.outputs): any): [string, string][]).map(([outputName, df], j, os) =>
- <TypedField
- className='setOutput'
- key={j}
- name={outputName}
- type={df}
- types={this.props.dataformats.map(d => d.name).filter(d => !['object', 'array'].includes(d))}
- existingFields={Object.keys(currSet.outputs)}
- nameUpdateFunc={str => {
- const newOutputs = changeObjFieldName(
- currSet.outputs,
- outputName,
- str
- );
-
- this.updateSet(index, i,
- {
- ...currSet,
- outputs: newOutputs
- }
- );
- }}
- typeUpdateFunc={str => this.updateSet(index, i,
- {
- ...currSet,
- outputs: {
- ...currSet.outputs,
- [outputName]: str
- }
- }
- )}
- deleteFunc={() => {
- const newOutputs = { ...currSet.outputs };
- delete newOutputs[outputName];
-
- this.updateSet(index, i,
- {
- ...currSet,
- outputs: newOutputs
- }
- );
- }}
-
- />
- )
- }
- <FormGroup row>
- <Col sm='12'>
- </Col>
- </FormGroup>
- </Container>
- </Col>
- </Row>
- )
- }
- </Col>
- </Row>
- </Container>
- );
-
- render = () => {
- const protocolIdx = this.state.activeProtocol;
- const protocol = protocolIdx > -1 ? this.props.data.contents.protocols[protocolIdx] || undefined : undefined;
-
- return (
- <div className='databaseEditor'>
- <div className='d-flex'>
- <Button
- className='mx-auto'
- outline
- color='secondary'
- onClick={() => this.props.saveFunc(this.props.data)}
- >
- Save Changes (Changes are <ValidSchemaBadge entity='database' obj={this.props.data} />)
- </Button>
- <TemplateButton
- data={this.props.data}
- entity={'database'}
- />
- </div>
- <Form onSubmit={(e) => e.preventDefault()}>
- <FormGroup tag='fieldset'>
- <FormGroup>
- <Label for='description'>Short Description</Label>
- <Input
- type='text'
- name='description'
- placeholder='Database description...'
- value={this.props.data.contents['description']}
- onChange={e => this.setContents({ ...this.props.data.contents, 'description': e.target.value})}
- />
- </FormGroup>
- <FormGroup>
- <Label for='rootFolder'>Root Folder</Label>
- <Input
- type='text'
- name='rootFolder'
- placeholder='Valid system path...'
- value={this.props.data.contents['root_folder']}
- onChange={e => this.setContents({ ...this.props.data.contents, 'root_folder': e.target.value})}
- />
- </FormGroup>
- </FormGroup>
- <div className='d-flex align-items-center mb-3'>
- <h3 className='mr-2 mb-0'>
- <InfoTooltip
- id='protocolsTooltip'
- info={`Protocols provide different use-cases for the database.`}
- >
- Protocols
- </InfoTooltip>
- </h3>
- <UncontrolledDropdown className='mr-3'>
- <DropdownToggle color='secondary' caret className=''>
- Active Protocol: { protocol ? protocol.name : '' }
- </DropdownToggle>
- <DropdownMenu>
- {
- this.props.data.contents.protocols
- .map((p, i) =>
- <DropdownItem
- id={`protocolChoice${ i }`}
- key={i}
- onClick={() => this.activateProtocol(i)}
- >
- { this.props.data.contents.protocols[i].name }{' '}
- ({ this.props.data.contents.protocols[i].template })
- </DropdownItem>
- )
- }
- </DropdownMenu>
- </UncontrolledDropdown>
- <ButtonGroup>
- <Button outline color='danger'
- onClick={e => {
- const protocols = this.props.data.contents.protocols
- .filter((p, i) => i !== protocolIdx);
-
- this.setContents({
- ...this.props.data.contents,
- protocols
- });
-
- this.activateProtocol(protocolIdx === 0 ? 0 : protocolIdx - 1);
- }}
- >
- Delete
- </Button>
- <Button outline color='secondary'
- onClick={e => {
- const protocols = [...this.props.data.contents.protocols];
- protocols.splice(
- protocolIdx + 1,
- 0,
- copyObj(protocol)
- );
-
- this.setContents({
- ...this.props.data.contents,
- protocols
- });
-
- this.activateProtocol(protocolIdx + 1);
- }}
- >
- Clone
- </Button>
- <Button
- outline
- color='success'
- id='newProtocol'
- onClick={e => {
- const protocols = [...this.props.data.contents.protocols, {
- name: '',
- template: '',
- sets: [],
- }];
-
- this.setContents({
- ...this.props.data.contents,
- protocols
- });
-
- this.activateProtocol(protocols.length - 1);
- }}
- >
- Create
- </Button>
- </ButtonGroup>
- <Dropdown
- isOpen={this.state.insertProtocolOpen}
- toggle={e => this.toggleInsertProtocol(false)}
- style={{flex: 1}}
- className='ml-2 mr-2'
- >
- <DropdownToggle
- tag='span'
- >
- <Input
- onChange={e => {
- this.protocolSearch(e.target.value);
- }}
- id='insertProtocolSearch'
- placeholder={`Insert protocol from template...`}
- title={`You may insert a protocol from a template from any database`}
- />
- </DropdownToggle>
- <DropdownMenu>
- {
- this.state.searchResults.map((r, i) =>
- <DropdownItem
- tag={Button}
- key={i}
- className='insertProtocolOption'
- onClick={e => {
- const newProtocol = copyObj(r);
- delete newProtocol['database'];
-
- const newProtocols = [...this.props.data.contents.protocols, newProtocol];
- this.setContents({
- ...this.props.data.contents,
- protocols: newProtocols,
- });
-
- this.activateProtocol(newProtocols.length - 1);
- }}
- >
- { `${ r.template } (${ r.database })` }
- {' '}
- <small className='text-muted'>
- Sets: { r.sets.length }
- </small>
- </DropdownItem>
- )
- }
- </DropdownMenu>
- </Dropdown>
- </div>
- { protocol && this.renderProtocol(
- protocolIdx,
- protocol
- )}
- </Form>
- <div className='toc'>
- <h4>Quick Jump:</h4>
- <ListGroup>
- {
- this.props.data.contents.protocols.map((p, i) => {
- const setList = (
- <ListGroup className='mt-1'>
- {
- p.sets.map((s, j) => {
- return (
- <ListGroupItem
- key={j}
- >
- <Button
- color='link'
- size='sm'
- onClick={e => {
- const setEl = document.querySelector(`.set${ j }`);
- if(!setEl)
- return;
- setEl.scrollIntoView(true);
- }}
- >
- { s.name.length > 20 ? `${ s.name.slice(0, 20) }…` : s.name }
- {' '}
- </Button>
- <ButtonGroup className='float-right'>
- <Button size='sm' outline color='danger'
- onClick={e => {
- this.updateProtocol(
- i,
- {
- ...p,
- sets: p.sets.filter((s, k) => j !== k)
- }
- );
- }}
- >
- Delete
- </Button>
- <Button size='sm' outline color='secondary'
- onClick={e => {
- const newSets = [...p.sets];
- newSets.splice(j + 1, 0, copyObj(s));
-
- this.updateProtocol(
- i,
- {
- ...p,
- sets: newSets
- }
- );
- }}
- >
- Clone
- </Button>
- </ButtonGroup>
- </ListGroupItem>
- );
- })
- }
- <ListGroupItem tag='button' action className='text-primary'
- onClick={e => {
- const newSets = [...p.sets, {
- name: '',
- template: '',
- view: '',
- outputs: {},
- parameters: {},
- }];
-
- this.updateProtocol(
- i,
- {
- ...p,
- sets: newSets
- }
- );
- }}
- >
- New Set
- </ListGroupItem>
- </ListGroup>
- );
-
- return (
- <ListGroupItem
- key={i}
- >
- <div
- className='clearfix'
- >
- <Button
- active={i === protocolIdx}
- color='link'
- size='sm'
- onClick={() => i !== protocolIdx && this.activateProtocol(i)}
- title={p.name}
- >
- { p.name.length > 25 ? `${ p.name.slice(0, 25) }…` : p.name }
- </Button>
- <ButtonGroup className='float-right'>
- <Button size='sm' outline color='danger'
- onClick={e => {
- const protocols = this.props.data.contents.protocols
- .filter((p, i) => i !== protocolIdx);
-
- this.setContents({
- ...this.props.data.contents,
- protocols
- });
-
- this.activateProtocol(protocolIdx === 0 ? 0 : protocolIdx - 1);
- }}
- >
- Delete
- </Button>
- <Button size='sm' outline color='secondary'
- onClick={e => {
- const protocols = [...this.props.data.contents.protocols];
- protocols.splice(
- protocolIdx + 1,
- 0,
- copyObj(protocol)
- );
-
- this.setContents({
- ...this.props.data.contents,
- protocols
- });
-
- this.activateProtocol(protocolIdx + 1);
- }}
- >
- Clone
- </Button>
- </ButtonGroup>
- </div>
- { i === protocolIdx && setList }
- </ListGroupItem>
- );
- })
- }
- <ListGroupItem tag='button' action className='text-primary'
- onClick={e => {
- const protocols = [...this.props.data.contents.protocols, {
- name: '',
- template: '',
- sets: [],
- }];
-
- this.setContents({
- ...this.props.data.contents,
- protocols
- });
-
- this.activateProtocol(protocols.length - 1);
- }}
- >
- New Protocol
- </ListGroupItem>
- </ListGroup>
- </div>
- </div>
- );
- }
-}
-
-const mapStateToProps = (state, ownProps) => {
- const dbs = Selectors.databaseGet(state);
- const obj = {
- databases: dbs,
- dataformats: Selectors.dataformatGet(state),
- data: dbs[ownProps.index] || getValidObj(),
- protocols: Selectors.databaseProtocols(state),
- };
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- console.log(`dispatching for ${ obj.name }`);
- dispatch(Actions[`databaseUpdate`](obj.name, obj));
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(DatabaseEditor);
diff --git a/conda/js/src/components/database/DatabaseEditor.spec.jsx b/conda/js/src/components/database/DatabaseEditor.spec.jsx
deleted file mode 100644
index 5b0d2e5145c7ac227cba9e915464bf70b6f84902..0000000000000000000000000000000000000000
--- a/conda/js/src/components/database/DatabaseEditor.spec.jsx
+++ /dev/null
@@ -1,455 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import { getValidDatabaseObj as getValidObj } from '@helpers/beat';
-import { DatabaseEditor as C } from '.';
-import { databaseProtocols } from '@store/selectors';
-
-import testDbs from '@test/test_dbs.json';
-import testDfs from '@test/test_dfs.json';
-
-const dfs = [];
-
-describe('<DatabaseEditor />', () => {
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- describe('accepts', () => {
- const dbs = [
- {
- name: 'test/test/1',
- contents: {
- 'root_folder': '/testing',
- description: 'this is the basic test case for database schema validation',
- protocols: [
- {
- name: 'protocol_1',
- template: 'template_1',
- sets: [
- {
- name: 'set_1',
- view: 'view_1',
- template: 'set_template_1',
- parameters: {
- param1: 'i dont know what these are'
- },
- outputs: {
- output_1: 'a/specific_dataformat/1',
- }
- }
- ]
- }
- ]
- }
- }
- ].concat(testDbs.map(db => getValidObj(db)));
-
- dbs.forEach(function(db){
- const saveFunc = () => {};
- const updateFunc = () => {};
- it(`${ db.name }`, () => {
- const protocols = databaseProtocols({ database: [ db ]});
- wrapper = mount(
- <C
- data={db}
- databases={dbs}
- dataformats={dfs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- protocols={protocols}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'databases', 'dataformats', 'saveFunc', 'updateFunc', 'protocols']
- ).deep.equal(
- [db, dbs, dfs, saveFunc, updateFunc, protocols]
- );
- });
- });
- });
-
- describe('creates', () => {
- it('simple/1', () => {
- const dbName = 'simple/1';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- wrapper = mount(
- <C
- data={getValidObj({name: dbName, contents: {}})}
- databases={testDbs.filter(d => d.name !== dbName).map(d => getValidObj(d))}
- dataformats={testDfs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- protocols={[]}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'databases', 'dataformats', 'saveFunc']
- );
-
- // general db
- expect(wrapper.props().data).to.have.property('name', dbName);
-
- wrapper.find('input[name="description"]').simulate('change', { target: { value: 'A test database that emits integers' }});
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.property('description', 'A test database that emits integers');
-
- wrapper.find('input[name="rootFolder"]').simulate('change', { target: { value: '/this/database/does/not/require/a/path' }});
- expect(updateFunc.callCount).to.equal(2);
- expect(wrapper.props().data.contents).to.have.property('root_folder', '/this/database/does/not/require/a/path');
-
- // create protocols
- wrapper.find('button#newProtocol').simulate('click');
- expect(updateFunc.callCount).to.equal(3);
- wrapper.find('button#newProtocol').simulate('click');
- expect(updateFunc.callCount).to.equal(4);
-
- expect(wrapper.props().data.contents).to.have.property('protocols').with.lengthOf(2);
-
- // protocol 1
- wrapper.find('button#protocolChoice0').simulate('click');
-
- wrapper.find('CacheInput[name="protocolName"]').prop('onChange')( { target: { value: 'protocol' }});
- expect(updateFunc.callCount).to.equal(5);
- expect(wrapper.props().data.contents.protocols[0]).to.have.property('name', 'protocol');
-
- wrapper.find('CacheInput[name="protocolTemplate"]').prop('onChange')( { target: { value: 'test_integers' }});
- expect(updateFunc.callCount).to.equal(6);
- expect(wrapper.props().data.contents.protocols[0]).to.have.property('template', 'test_integers');
-
- // protocol 1 sets
- wrapper.find('button#newSet').simulate('click');
- expect(updateFunc.callCount).to.equal(7);
- wrapper.find('button#newSet').simulate('click');
- expect(updateFunc.callCount).to.equal(8);
- expect(wrapper.props().data.contents.protocols[0]).to.have.property('sets').with.lengthOf(2);
-
- // protocol 1 set 1
- wrapper.find('CacheInput[name="setName0"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(9);
- expect(wrapper.props().data.contents.protocols[0].sets[0]).to.have.property('name', 'set');
- wrapper.find('CacheInput[name="setTemplate0"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(10);
- expect(wrapper.props().data.contents.protocols[0].sets[0]).to.have.property('template', 'set');
- wrapper.find('CacheInput[name="setView0"]').prop('onChange')( { target: { value: 'View' }});
- expect(updateFunc.callCount).to.equal(11);
- expect(wrapper.props().data.contents.protocols[0].sets[0]).to.have.property('view', 'View');
-
- wrapper.find('.set0 button.newOutput').simulate('click');
- expect(updateFunc.callCount).to.equal(12);
- wrapper.find('.set0 .setOutput CacheInput[type="text"]').prop('onChange')( { target: { value: 'out' }});
- expect(updateFunc.callCount).to.equal(13);
- wrapper.find('.set0 .setOutput select').simulate('change', { target: { value: 'system/integer/1' }});
- expect(updateFunc.callCount).to.equal(14);
- expect(wrapper.props().data.contents.protocols[0].sets[0].outputs).to.have.property('out', 'system/integer/1');
-
- // protocol 1 set 2
- wrapper.find('CacheInput[name="setName1"]').prop('onChange')( { target: { value: 'set2' }});
- expect(updateFunc.callCount).to.equal(15);
- expect(wrapper.props().data.contents.protocols[0].sets[1]).to.have.property('name', 'set2');
- wrapper.find('CacheInput[name="setTemplate1"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(16);
- expect(wrapper.props().data.contents.protocols[0].sets[1]).to.have.property('template', 'set');
- wrapper.find('CacheInput[name="setView1"]').prop('onChange')( { target: { value: 'View2' }});
- expect(updateFunc.callCount).to.equal(17);
- expect(wrapper.props().data.contents.protocols[0].sets[1]).to.have.property('view', 'View2');
-
- wrapper.find('.set1 button.newOutput').simulate('click');
- expect(updateFunc.callCount).to.equal(18);
- wrapper.find('.set1 .setOutput CacheInput[type="text"]').prop('onChange')( { target: { value: 'out' }});
- expect(updateFunc.callCount).to.equal(19);
- wrapper.find('.set1 .setOutput select').simulate('change', { target: { value: 'system/integer/1' }});
- expect(updateFunc.callCount).to.equal(20);
- expect(wrapper.props().data.contents.protocols[0].sets[1].outputs).to.have.property('out', 'system/integer/1');
-
- // protocol 2
- wrapper.find('button#protocolChoice1').simulate('click');
- wrapper.find('CacheInput[name="protocolName"]').prop('onChange')( { target: { value: 'protocol2' }});
- expect(updateFunc.callCount).to.equal(21);
- expect(wrapper.props().data.contents.protocols[1]).to.have.property('name', 'protocol2');
-
- wrapper.find('CacheInput[name="protocolTemplate"]').prop('onChange')( { target: { value: 'test_integers' }});
- expect(updateFunc.callCount).to.equal(22);
- expect(wrapper.props().data.contents.protocols[1]).to.have.property('template', 'test_integers');
-
- // protocol 2 sets
- wrapper.find('button#newSet').simulate('click');
- expect(updateFunc.callCount).to.equal(23);
- wrapper.find('button#newSet').simulate('click');
- expect(updateFunc.callCount).to.equal(24);
- expect(wrapper.props().data.contents.protocols[1]).to.have.property('sets').with.lengthOf(2);
-
- // protocol 2 set 1
- wrapper.find('CacheInput[name="setName0"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(25);
- expect(wrapper.props().data.contents.protocols[1].sets[0]).to.have.property('name', 'set');
- wrapper.find('CacheInput[name="setTemplate0"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(26);
- expect(wrapper.props().data.contents.protocols[1].sets[0]).to.have.property('template', 'set');
- wrapper.find('CacheInput[name="setView0"]').prop('onChange')( { target: { value: 'LargeView' }});
- expect(updateFunc.callCount).to.equal(27);
- expect(wrapper.props().data.contents.protocols[1].sets[0]).to.have.property('view', 'LargeView');
-
- wrapper.find('.set0 button.newOutput').simulate('click');
- expect(updateFunc.callCount).to.equal(28);
- wrapper.find('.set0 .setOutput CacheInput[type="text"]').prop('onChange')( { target: { value: 'out' }});
- expect(updateFunc.callCount).to.equal(29);
- wrapper.find('.set0 .setOutput select').simulate('change', { target: { value: 'system/integer/1' }});
- expect(updateFunc.callCount).to.equal(30);
- expect(wrapper.props().data.contents.protocols[1].sets[0].outputs).to.have.property('out', 'system/integer/1');
-
- // protocol 2 set 2
- wrapper.find('CacheInput[name="setName1"]').prop('onChange')( { target: { value: 'set2' }});
- expect(updateFunc.callCount).to.equal(31);
- expect(wrapper.props().data.contents.protocols[1].sets[1]).to.have.property('name', 'set2');
- wrapper.find('CacheInput[name="setTemplate1"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(32);
- expect(wrapper.props().data.contents.protocols[1].sets[1]).to.have.property('template', 'set');
- wrapper.find('CacheInput[name="setView1"]').prop('onChange')( { target: { value: 'View2' }});
- expect(updateFunc.callCount).to.equal(33);
- expect(wrapper.props().data.contents.protocols[1].sets[1]).to.have.property('view', 'View2');
-
- wrapper.find('.set1 button.newOutput').simulate('click');
- expect(updateFunc.callCount).to.equal(34);
- wrapper.find('.set1 .setOutput CacheInput[type="text"]').prop('onChange')( { target: { value: 'out' }});
- expect(updateFunc.callCount).to.equal(35);
- wrapper.find('.set1 .setOutput select').simulate('change', { target: { value: 'system/integer/1' }});
- expect(updateFunc.callCount).to.equal(36);
- expect(wrapper.props().data.contents.protocols[1].sets[1].outputs).to.have.property('out', 'system/integer/1');
-
- expect(wrapper.props().data.contents).to.deep.equal({
- 'root_folder': '/this/database/does/not/require/a/path',
- 'description': 'A test database that emits integers',
- 'protocols': [
- {
- 'name': 'protocol',
- 'template': 'test_integers',
- 'sets': [
- {
- 'outputs': {
- 'out': 'system/integer/1'
- },
- 'name': 'set',
- 'template': 'set',
- 'view': 'View',
- parameters: {},
- },
- {
- 'outputs': {
- 'out': 'system/integer/1'
- },
- 'name': 'set2',
- 'template': 'set',
- 'view': 'View2',
- parameters: {},
- }
- ]
- },
- {
- 'name': 'protocol2',
- 'template': 'test_integers',
- 'sets': [
- {
- 'outputs': {
- 'out': 'system/integer/1'
- },
- 'name': 'set',
- 'template': 'set',
- 'view': 'LargeView',
- parameters: {},
- },
- {
- 'outputs': {
- 'out': 'system/integer/1'
- },
- 'name': 'set2',
- 'template': 'set',
- 'view': 'View2',
- parameters: {},
- }
- ]
- }
- ]
- });
- });
-
- // tests inserting a protocol from a database
- it('simple/2', () => {
- const dbName = 'simple/2';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({
- data: obj,
- protocols: databaseProtocols({ database: [ obj ] })
- });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const startData = getValidObj({name: dbName, contents: {}});
- wrapper = mount(
- <C
- data={startData}
- databases={testDbs.filter(d => d.name !== dbName).map(d => getValidObj(d))}
- dataformats={testDfs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- protocols={databaseProtocols({ database: [ startData ] })}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'databases', 'dataformats', 'saveFunc', 'protocols']
- );
-
- // general db
- expect(wrapper.props().data).to.have.property('name', dbName);
-
- wrapper.find('input[name="description"]').simulate('change', { target: { value: 'A test database that emits integers' }});
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.property('description', 'A test database that emits integers');
-
- wrapper.find('input[name="rootFolder"]').simulate('change', { target: { value: '/this/database/does/not/require/a/path' }});
- expect(updateFunc.callCount).to.equal(2);
- expect(wrapper.props().data.contents).to.have.property('root_folder', '/this/database/does/not/require/a/path');
-
- // create protocols
- wrapper.find('button#newProtocol').simulate('click');
- expect(updateFunc.callCount).to.equal(3);
-
- expect(wrapper.props().data.contents).to.have.property('protocols').with.lengthOf(1);
-
- // protocol 1
- wrapper.find('button#protocolChoice0').simulate('click');
-
- wrapper.find('CacheInput[name="protocolName"]').prop('onChange')( { target: { value: 'protocol' }});
- expect(updateFunc.callCount).to.equal(4);
- expect(wrapper.props().data.contents.protocols[0]).to.have.property('name', 'protocol');
-
- wrapper.find('CacheInput[name="protocolTemplate"]').prop('onChange')( { target: { value: 'test_integers' }});
- expect(updateFunc.callCount).to.equal(5);
- expect(wrapper.props().data.contents.protocols[0]).to.have.property('template', 'test_integers');
-
- // protocol 1 sets
- wrapper.find('button#newSet').simulate('click');
- expect(updateFunc.callCount).to.equal(6);
- wrapper.find('button#newSet').simulate('click');
- expect(updateFunc.callCount).to.equal(7);
- expect(wrapper.props().data.contents.protocols[0]).to.have.property('sets').with.lengthOf(2);
-
- // protocol 1 set 1
- wrapper.find('CacheInput[name="setName0"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(8);
- expect(wrapper.props().data.contents.protocols[0].sets[0]).to.have.property('name', 'set');
- wrapper.find('CacheInput[name="setTemplate0"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(9);
- expect(wrapper.props().data.contents.protocols[0].sets[0]).to.have.property('template', 'set');
- wrapper.find('CacheInput[name="setView0"]').prop('onChange')( { target: { value: 'View' }});
- expect(updateFunc.callCount).to.equal(10);
- expect(wrapper.props().data.contents.protocols[0].sets[0]).to.have.property('view', 'View');
-
- wrapper.find('.set0 button.newOutput').simulate('click');
- expect(updateFunc.callCount).to.equal(11);
- wrapper.find('.set0 .setOutput CacheInput[type="text"]').prop('onChange')( { target: { value: 'out' }});
- expect(updateFunc.callCount).to.equal(12);
- wrapper.find('.set0 .setOutput select').simulate('change', { target: { value: 'system/integer/1' }});
- expect(updateFunc.callCount).to.equal(13);
- expect(wrapper.props().data.contents.protocols[0].sets[0].outputs).to.have.property('out', 'system/integer/1');
-
- // protocol 1 set 2
- wrapper.find('CacheInput[name="setName1"]').prop('onChange')( { target: { value: 'set2' }});
- expect(updateFunc.callCount).to.equal(14);
- expect(wrapper.props().data.contents.protocols[0].sets[1]).to.have.property('name', 'set2');
- wrapper.find('CacheInput[name="setTemplate1"]').prop('onChange')( { target: { value: 'set' }});
- expect(updateFunc.callCount).to.equal(15);
- expect(wrapper.props().data.contents.protocols[0].sets[1]).to.have.property('template', 'set');
- wrapper.find('CacheInput[name="setView1"]').prop('onChange')( { target: { value: 'View2' }});
- expect(updateFunc.callCount).to.equal(16);
- expect(wrapper.props().data.contents.protocols[0].sets[1]).to.have.property('view', 'View2');
-
- wrapper.find('.set1 button.newOutput').simulate('click');
- expect(updateFunc.callCount).to.equal(17);
- wrapper.find('.set1 .setOutput CacheInput[type="text"]').prop('onChange')( { target: { value: 'out' }});
- expect(updateFunc.callCount).to.equal(18);
- wrapper.find('.set1 .setOutput select').simulate('change', { target: { value: 'system/integer/1' }});
- expect(updateFunc.callCount).to.equal(19);
- expect(wrapper.props().data.contents.protocols[0].sets[1].outputs).to.have.property('out', 'system/integer/1');
-
- // protocol 2
- wrapper.find('input#insertProtocolSearch').prop('onChange')( { target: { value: 'test_integers' }});
- wrapper.update();
- wrapper.find('button.insertProtocolOption').at(0).simulate('click');
- expect(updateFunc.callCount).to.equal(20);
- wrapper.find('button#protocolChoice1').simulate('click');
- wrapper.find('CacheInput[name="protocolName"]').prop('onChange')( { target: { value: 'protocol2' }});
- expect(updateFunc.callCount).to.equal(21);
- expect(wrapper.props().data.contents.protocols[1]).to.have.property('name', 'protocol2');
-
- expect(wrapper.props().data.contents).to.deep.equal({
- 'root_folder': '/this/database/does/not/require/a/path',
- 'description': 'A test database that emits integers',
- 'protocols': [
- {
- 'name': 'protocol',
- 'template': 'test_integers',
- 'sets': [
- {
- 'outputs': {
- 'out': 'system/integer/1'
- },
- 'name': 'set',
- 'template': 'set',
- 'view': 'View',
- parameters: {},
- },
- {
- 'outputs': {
- 'out': 'system/integer/1'
- },
- 'name': 'set2',
- 'template': 'set',
- 'view': 'View2',
- parameters: {},
- }
- ]
- },
- {
- 'name': 'protocol2',
- 'template': 'test_integers',
- 'sets': [
- {
- 'outputs': {
- 'out': 'system/integer/1'
- },
- 'name': 'set',
- 'template': 'set',
- 'view': 'View',
- parameters: {},
- },
- {
- 'outputs': {
- 'out': 'system/integer/1'
- },
- 'name': 'set2',
- 'template': 'set',
- 'view': 'View2',
- parameters: {},
- }
- ]
- }
- ]
- });
- });
- });
-});
diff --git a/conda/js/src/components/database/index.js b/conda/js/src/components/database/index.js
deleted file mode 100644
index 6436068cc34e0d8362d53b3a9f1126c627b0b6bb..0000000000000000000000000000000000000000
--- a/conda/js/src/components/database/index.js
+++ /dev/null
@@ -1,8 +0,0 @@
-// @flow
-import ConnectedDatabaseEditor, {DatabaseEditor} from './DatabaseEditor.jsx';
-
-export {
- DatabaseEditor,
-};
-
-export default ConnectedDatabaseEditor;
diff --git a/conda/js/src/components/dataformat/DataformatEditor.jsx b/conda/js/src/components/dataformat/DataformatEditor.jsx
deleted file mode 100644
index dcd2d03b4e9eb824c9c7450ad5878b5d16b13d75..0000000000000000000000000000000000000000
--- a/conda/js/src/components/dataformat/DataformatEditor.jsx
+++ /dev/null
@@ -1,292 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- Button,
- Form,
- FormGroup,
- Label,
- Input,
- InputGroup,
- FormText,
- Collapse,
- Card,
- CardHeader,
- CardBody,
- TabContent, TabPane, Nav, NavItem, NavLink, CardTitle, CardText,
- FormFeedback,
- Alert,
- InputGroupAddon,
- InputGroupText,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import * as Selectors from '@store/selectors.js';
-
-import ValidSchemaBadge from '../ValidSchemaBadge.jsx';
-import CacheInput from '../CacheInput.jsx';
-import DeleteInputBtn from '../DeleteInputBtn.jsx';
-import TypedField from '../TypedField.jsx';
-
-import * as Actions from '@store/actions.js';
-import { BUILTIN_TYPES, getValidDataformatObj as getValidObj } from '@helpers/beat';
-import type {
- BeatObject,
-} from '@helpers/beat.js';
-
-import { changeObjFieldName, generateNewKey, copyObj } from '@helpers';
-
-type Props = {
- data: BeatObject,
- dataformats: BeatObject[],
- saveFunc: (BeatObject) => any,
- updateFunc: (BeatObject) => any,
-};
-
-const isObj = (obj): boolean => !Array.isArray(obj) && typeof obj === 'object' && obj !== null;
-
-const shownType = (obj: any): string => {
- if(Array.isArray(obj))
- return 'array';
- if(isObj(obj))
- return 'object';
- return obj;
-};
-
-const RecursiveObj = ({ obj, dfs, updateFunc }: {obj: any, dfs: string[], updateFunc: (any) => any}) => (
- <div className='ml-3 pl-3 border border-top-0 border-right-0 border-bottom-0 my-1 dfLevel'>
- {
- (Object.entries(obj): [string, any][]).map(([name, val], i, entries) =>
- <div key={i} className={`field${ i }`}>
- <TypedField
- className='fieldNameType'
- name={name}
- type={shownType(val)}
- types={dfs}
- existingFields={Object.keys(obj)}
- nameUpdateFunc={str => {
- const newObj = changeObjFieldName(obj, name, str);
- updateFunc(newObj);
- }}
- typeUpdateFunc={str => {
- let newTypeObj;
- switch(str){
- case 'array':
- newTypeObj = [0, 'string'];
- break;
- case 'object':
- newTypeObj = {};
- break;
- default:
- newTypeObj = str;
- break;
- }
-
- updateFunc({ ...obj, [name]: newTypeObj });
- }}
- deleteFunc={() => {
- const newObj = { ...obj };
- delete newObj[name];
- updateFunc(newObj);
- }}
- />
- {
- Array.isArray(val) &&
- <FormGroup className='ml-3 pl-3 border border-top-0 border-right-0 border-bottom-0'>
- <FormGroup row>
- <Col sm='3'>
- <InputGroup className='mb-1 dimensions'>
- <InputGroupAddon addonType='prepend'>Dimensions</InputGroupAddon>
- <Input
- type='number'
- min='1'
- max='5'
- value={val.filter(v => Number.isInteger(v)).length}
- onChange={(e) => {
- const newLength = Number.parseInt(`${ e.target.value }`);
- const currVals = val.filter(v => Number.isInteger(v));
- const newVals = Array.apply(null, Array(newLength))
- .map((n, i) => currVals[i] !== undefined ? currVals[i] : 0);
- newVals.push(val[val.length - 1]);
- obj[name] = newVals;
- updateFunc(obj);
- }}
- />
- </InputGroup>
- </Col>
- <Col sm='auto' className='d-flex my-auto p-0'>
- <h5>Sizes:</h5>
- </Col>
- {
- val.filter(v => Number.isInteger(v)).map((v, i) =>
- <Col key={i} className={`dimension${ i }`}>
- <InputGroup className='mb-1'>
- <InputGroupAddon addonType='prepend'>
- <InputGroupText>
- Dim. {i}
- </InputGroupText>
- </InputGroupAddon>
- <Input
- key={i}
- type='number'
- min='0'
- value={v}
- size='3'
- onChange={(e) => {
- obj[name][i] = Number.parseInt(`${ e.target.value }`);
- updateFunc(obj);
- }}
- />
- </InputGroup>
- </Col>
- )
- }
- </FormGroup>
- <InputGroup className='mb-3'>
- <InputGroupAddon addonType='prepend'>Subtype</InputGroupAddon>
- <Input
- type='select'
- value={typeof val[val.length - 1] === 'string' ? val[val.length - 1] : 'object'}
- className='custom-select subtype'
- onChange={(e) => {
- let newTypeObj;
- switch(e.target.value){
- case 'array':
- newTypeObj = [0, 'string'];
- break;
- case 'object':
- newTypeObj = {};
- break;
- default:
- newTypeObj = e.target.value;
- break;
- }
-
- obj[name][val.length - 1] = newTypeObj;
- updateFunc(obj);
- }}
- >
- <option disabled value=''>Type...</option>
- {
- dfs.map((d, i) => (
- <option key={i} value={d}>{d === 'object' ? 'dict' : d}</option>
- ))
- }
- </Input>
- </InputGroup>
- {
- shownType(val[val.length - 1]) === 'object' &&
- <RecursiveObj
- dfs={dfs}
- obj={val[val.length - 1]}
- updateFunc={(subobj) => {
- obj[name][val.length - 1] = subobj;
- updateFunc(obj);
- }}
- />
- }
-
- </FormGroup>
- }
- {
- isObj(val) &&
- <RecursiveObj
- dfs={dfs}
- obj={val}
- updateFunc={(subobj) => {
- obj[name] = subobj;
- updateFunc(obj);
- }}
- />
- }
- </div>
- )
- }
- <Button
- color='success'
- onClick={e => {
- let newKey = generateNewKey('field', Object.keys(obj));
-
- updateFunc({
- ...obj,
- [newKey]: 'string'
- });
- }}
- >
- +
- </Button>
- </div>
-);
-
-export class DataformatEditor extends React.Component<Props> {
- constructor(props: Props) {
- super(props);
- }
-
- setContents = (newContents: any) => {
- this.props.updateFunc({
- ...this.props.data,
- contents: {
- '#description': this.props.data.contents['#description'],
- ...newContents,
- }
- });
- }
-
- allDfs = () => this.props.dataformats.map(d => d.name).concat(BUILTIN_TYPES);
-
- filteredContents = (obj: any = this.props.data.contents) => Object.entries(obj).filter(([n, v]) => n !== '#description').reduce((o, [n, v]) => ({...o, [n]: v}), {});
-
- render = () => (
- <div>
- <div className='d-flex'>
- <Button
- className='mx-auto'
- outline
- color='secondary'
- onClick={() => this.props.saveFunc(this.props.data)}
- >
- Save Changes (Changes are <ValidSchemaBadge entity='dataformat' obj={this.props.data} />)
- </Button>
- </div>
- <Form onSubmit={(e) => e.preventDefault()}>
- <FormGroup tag='fieldset'>
- <FormGroup>
- <Label for='description'>Short Description</Label>
- <Input
- type='text'
- name='description'
- placeholder='Dataformat description...'
- value={this.props.data.contents['#description']}
- onChange={e => this.setContents({ ...this.props.data.contents, '#description': e.target.value})}
- />
- </FormGroup>
- </FormGroup>
- <h4>Fields</h4>
- <RecursiveObj obj={this.filteredContents()} dfs={this.allDfs()} updateFunc={(obj) => this.setContents(obj)} />
- </Form>
- </div>
- );
-}
-
-const mapStateToProps = (state, ownProps) => {
- const dfs = Selectors.dataformatGet(state);
- const obj = {
- dataformats: dfs,
- data: dfs[ownProps.index] || getValidObj()
- };
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- console.log(`dispatching for ${ obj.name }`);
- dispatch(Actions[`dataformatUpdate`](obj.name, obj));
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(DataformatEditor);
diff --git a/conda/js/src/components/dataformat/DataformatEditor.spec.jsx b/conda/js/src/components/dataformat/DataformatEditor.spec.jsx
deleted file mode 100644
index 280172ab2756c93b01a31e8499d57ec5320b574d..0000000000000000000000000000000000000000
--- a/conda/js/src/components/dataformat/DataformatEditor.spec.jsx
+++ /dev/null
@@ -1,261 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import { getValidDataformatObj as getValidObj } from '@helpers/beat';
-import { DataformatEditor as C } from '.';
-
-import testDfs from '@test/test_dfs.json';
-
-describe('<DataformatEditor />', () => {
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- describe('accepts', () => {
- const dfs = [
- {
- name: 'test/df/1',
- contents: {
- '#description': '',
- 'field_1': 'string',
- }
- }
- ].concat(testDfs.map(df => getValidObj(df)));
-
- dfs.forEach(function(df){
- const saveFunc = () => {};
- const updateFunc = () => {};
- it(`${ df.name }`, () => {
- wrapper = mount(
- <C
- data={df}
- dataformats={dfs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'dataformats', 'saveFunc', 'updateFunc']
- ).deep.equal(
- [df, dfs, saveFunc, updateFunc]
- );
- });
- });
- });
-
- describe('creates', () => {
- it('system/integer/1', () => {
- const dfName = 'system/integer/1';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- wrapper = mount(
- <C
- data={getValidObj({name: dfName, contents: {}})}
- dataformats={testDfs.filter(d => d.name !== dfName)}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'dataformats', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', dfName);
-
- wrapper.find('input[name="description"]').simulate('change', { target: { value: 'Single (32 bits) integer value'}});
- expect(wrapper.props().data.contents).to.have.property('#description', 'Single (32 bits) integer value');
- expect(updateFunc.callCount).to.equal(1);
-
- wrapper.find('button.btn-success').simulate('click');
- expect(updateFunc.callCount).to.equal(2);
- wrapper.find('CacheInput[placeholder="Name..."]').prop('onChange')( { target: { value: 'value' }});
- expect(updateFunc.callCount).to.equal(3);
-
- wrapper.find('select').simulate('change', { target: { value: 'int32' }});
- expect(updateFunc.callCount).to.equal(4);
- expect(wrapper.props().data.contents).to.have.property('value', 'int32');
-
- expect(wrapper.props().data).to.deep.equal({
- 'name': 'system/integer/1',
- 'contents': {
- '#description': 'Single (32 bits) integer value',
- 'value': 'int32'
- }
- });
- });
-
- it('system/array_1d_text/1', () => {
- const dfName = 'system/array_1d_text/1';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- wrapper = mount(
- <C
- data={getValidObj({name: dfName, contents: {}})}
- dataformats={testDfs.filter(d => d.name !== dfName)}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'dataformats', 'saveFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', dfName);
-
- wrapper.find('button.btn-success').simulate('click');
- wrapper.find('CacheInput[placeholder="Name..."]').prop('onChange')( { target: { value: 'text' }});
-
- wrapper.find('select').simulate('change', { target: { value: 'array' }});
- expect(wrapper.props().data.contents).to.have.deep.property('text', [0, 'string']);
-
- expect(wrapper.props().data).to.deep.equal({
- 'name': 'system/array_1d_text/1',
- 'contents': {
- '#description': '',
- 'text': [
- 0,
- 'string'
- ]
- }
- });
- });
-
- it('system/array_2d_floats/1', () => {
- const dfName = 'system/array_2d_floats/1';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- wrapper = mount(
- <C
- data={getValidObj({name: dfName, contents: {}})}
- dataformats={testDfs.filter(d => d.name !== dfName)}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'dataformats', 'saveFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', dfName);
-
- wrapper.find('input[name="description"]').simulate('change', { target: { value: 'Basic format containing a two-dimensional array of float values'}});
- expect(wrapper.props().data.contents).to.have.property('#description', 'Basic format containing a two-dimensional array of float values');
-
- wrapper.find('button.btn-success').simulate('click');
- wrapper.find('CacheInput[placeholder="Name..."]').prop('onChange')( { target: { value: 'value' }});
-
- wrapper.find('select').simulate('change', { target: { value: 'array' }});
- wrapper.find('input[type="number"][min="1"]').simulate('change', { target: { value: '2' }});
- wrapper.find('select').at(1).simulate('change', { target: { value: 'float64' }});
-
- expect(wrapper.props().data.contents).to.have.deep.property('value', [0, 0, 'float64']);
-
- expect(wrapper.props().data).to.deep.equal({
- 'name': 'system/array_2d_floats/1',
- 'contents': {
- '#description': 'Basic format containing a two-dimensional array of float values',
- 'value': [
- 0,
- 0,
- 'float64'
- ]
- }
- });
- });
-
- it('plot/bar/1', () => {
- const dfName = 'plot/bar/1';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- wrapper = mount(
- <C
- data={getValidObj({name: dfName, contents: {}})}
- dataformats={testDfs.filter(d => d.name !== dfName)}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'dataformats', 'saveFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', dfName);
-
- wrapper.find('input[name="description"]').simulate('change', { target: { value: 'Array of bar plots'}});
- expect(wrapper.props().data.contents).to.have.property('#description', 'Array of bar plots');
-
- // 'data' field
- wrapper.find('.dfLevel button.btn-success').simulate('click');
- wrapper.find('.dfLevel .field0 CacheInput[placeholder="Name..."]').prop('onChange')( { target: { value: 'data' }});
- wrapper.find('.dfLevel .field0 select').simulate('change', { target: { value: 'array' }});
- wrapper.find('.dfLevel .field0 select.subtype').simulate('change', { target: { value: 'object' }});
- expect(wrapper.props().data.contents).to.have.deep.property('data', [0, {}]);
-
- // 'label' subfield
- wrapper.find('.dfLevel .field0 .dfLevel button.btn-success').simulate('click');
- wrapper.find('.dfLevel .field0 .dfLevel .field0 CacheInput[placeholder="Name..."]').prop('onChange')( { target: { value: 'label' }});
- wrapper.find('.dfLevel .field0 .dfLevel .field0 select').simulate('change', { target: { value: 'string' }});
- expect(wrapper.props().data.contents.data[1]).to.have.deep.property('label', 'string');
-
- // 'x' subfield
- wrapper.find('.dfLevel .field0 .dfLevel button.btn-success').simulate('click');
- wrapper.find('.dfLevel .field0 .dfLevel .field1 CacheInput[placeholder="Name..."]').prop('onChange')( { target: { value: 'x' }});
- wrapper.find('.dfLevel .field0 .dfLevel .field1 select').simulate('change', { target: { value: 'array' }});
- wrapper.find('.dfLevel .field0 .dfLevel .field1 select.subtype').simulate('change', { target: { value: 'float64' }});
- expect(wrapper.props().data.contents.data[1]).to.have.deep.property('x', [0, 'float64']);
-
- // 'y' subfield
- wrapper.find('.dfLevel .field0 .dfLevel button.btn-success').simulate('click');
- wrapper.find('.dfLevel .field0 .dfLevel .field2 CacheInput[placeholder="Name..."]').prop('onChange')( { target: { value: 'y' }});
- wrapper.find('.dfLevel .field0 .dfLevel .field2 select').simulate('change', { target: { value: 'array' }});
- wrapper.find('.dfLevel .field0 .dfLevel .field2 select.subtype').simulate('change', { target: { value: 'float64' }});
- expect(wrapper.props().data.contents.data[1]).to.have.deep.property('y', [0, 'float64']);
-
-
- expect(wrapper.props().data).to.deep.equal({
- 'name': 'plot/bar/1',
- 'contents': {
- '#description': 'Array of bar plots',
- 'data': [
- 0,
- {
- 'label': 'string',
- 'x': [
- 0,
- 'float64'
- ],
- 'y': [
- 0,
- 'float64'
- ]
- }
- ]
- }
- });
- });
- });
-});
diff --git a/conda/js/src/components/dataformat/index.js b/conda/js/src/components/dataformat/index.js
deleted file mode 100644
index 9a1ab793fbd4471019a41646d23a8cc4b48df1d5..0000000000000000000000000000000000000000
--- a/conda/js/src/components/dataformat/index.js
+++ /dev/null
@@ -1,8 +0,0 @@
-// @flow
-import ConnectedDataformatEditor, {DataformatEditor} from './DataformatEditor.jsx';
-
-export {
- DataformatEditor,
-};
-
-export default ConnectedDataformatEditor;
diff --git a/conda/js/src/components/experiment/ExperimentEditor.css b/conda/js/src/components/experiment/ExperimentEditor.css
deleted file mode 100644
index be97899105aebf9882e6695b5bb75e1191d3ba81..0000000000000000000000000000000000000000
--- a/conda/js/src/components/experiment/ExperimentEditor.css
+++ /dev/null
@@ -1,3 +0,0 @@
-.experimentEditor .fo {
- cursor: pointer;
-}
diff --git a/conda/js/src/components/experiment/ExperimentEditor.jsx b/conda/js/src/components/experiment/ExperimentEditor.jsx
deleted file mode 100644
index acc55144d1bbae5b3b94671868d37af4f5c9e5f8..0000000000000000000000000000000000000000
--- a/conda/js/src/components/experiment/ExperimentEditor.jsx
+++ /dev/null
@@ -1,1398 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- Button, ButtonGroup,
- Form,
- FormGroup,
- Label,
- Input,
- InputGroup,
- FormText,
- Collapse,
- Card,
- CardHeader,
- CardBody,
- TabContent, TabPane, Nav, NavItem, NavLink, CardTitle, CardText,
- FormFeedback,
- Alert,
- InputGroupAddon,
- Badge,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import cn from 'classnames';
-
-import lev from 'fast-levenshtein';
-
-import './ExperimentEditor.css';
-import { getValidExperimentObj as getValidObj, expGetDefaultParameterValue as getDefaultParameterValue } from '@helpers/beat';
-import type { BeatObject, ParameterValue, BeatEnvironment } from '@helpers/beat';
-import { changeObjFieldName, sortObject, copyObj } from '@helpers';
-
-import * as Selectors from '@store/selectors.js';
-import * as Actions from '@store/actions.js';
-
-import ValidSchemaBadge from '../ValidSchemaBadge.jsx';
-import CacheInput from '../CacheInput.jsx';
-import DeleteInputBtn from '../DeleteInputBtn.jsx';
-import TypedField from '../TypedField.jsx';
-import InfoTooltip from '../InfoTooltip.jsx';
-import ParameterConsume from '../ParameterConsume.jsx';
-
-import GraphicalEditor from '../toolchain/GraphicalEditor.jsx';
-import type { BlockSet } from '../toolchain/types.js';
-import { connectionToId } from '../toolchain/ToolchainConnection.jsx';
-
-type Props = {
- data: BeatObject,
- experiments: BeatObject[],
- normalBlocks: BeatObject[],
- analyzerBlocks: BeatObject[],
- datasets: any[],
- toolchain: BeatObject,
- environments: { [string]: BeatEnvironment },
- saveFunc: (BeatObject) => any,
- updateFunc: (BeatObject) => any,
-};
-
-type State = {
- /* LockMap: map of which blocks are used in the type inference
- * This is a per-block mapping of which blocks are used for type inference.
- * There are more references (including some commented-out buttons & such) to
- * block-level control of the lock map. Currently this is managed behind-the-scenes,
- * where once a dataset/block has a valid dataset/algorithm assigned to it,
- * its lock map value is true. The user can only influence this by disabling
- * the entire lock map via "disable type inference" button.
- */
- lockMap: LockMap,
- // info for the modal for editing blocks
- activeBlockInfo: {
- set: ?BlockSet,
- name: ?string,
- },
- // is type inference disabled globally?
- disableTypeInference: boolean,
-};
-
-type LockMap = {
- [string]: boolean,
-};
-
-// parses a string resulting from the "datasetFieldToString" function into the original database, protocol, and set
-const rxStringToDataset = /^(\S+)\/(\S+)\s\((\S+\/\d+)\)/;
-// parses a string resulting from the "datasetProtocolFieldToString" function into the original database and protocol
-const rxStringToDatasetProtocol = /^(\S+)\s\((\S+\/\d+)\)/;
-// given a dataset obj (with database, protocol, and set fields), return a user-readable string representing this dataset
-const datasetFieldToString = (dataset: any) => `${ dataset.protocol }/${ dataset.set } (${ dataset.database })`;
-// given a dataset obj (with database, protocol, and set fields), return a user-readable string representing this dataset's protocol
-const datasetProtocolFieldToString = (dataset: any) => `${ dataset.protocol } (${ dataset.database })`;
-// given an algorithm, returns maps of the inputs and outputs of the algorithm (the i/o name mapped to its type)
-const algIOs = (alg: any) => {
- const inputs = alg.contents.groups.map(g => {
- if(!g.inputs)
- return [];
- return Object.entries(g.inputs)
- .map(([iName, tObj]) => ({[iName]: tObj.type}))
- .reduce((o, iObj) => ({...o, ...iObj}), {})
- ;
- })
- .reduce((o, is) => ({...o, ...is}), {});
-
- const outputs = alg.contents.groups.map(g => {
- if(!g.outputs)
- return [];
- return Object.entries(g.outputs)
- .map(([iName, tObj]) => ({[iName]: tObj.type}))
- .reduce((o, iObj) => ({...o, ...iObj}), {})
- ;
- })
- .reduce((o, is) => ({...o, ...is}), {});
-
- return [
- inputs,
- outputs,
- ];
-};
-
-// given a block and the available algorithms,
-// remap the chosen algorithm type data onto the block i/o names
-const getBlockIOTypes = (block: any, algs: any[]) => {
- const alg = algs.find(alg => alg.name === block.algorithm);
- const [ais, aos] = alg ? algIOs(alg) : [{}, {}];
- const bis = Object.entries(block.inputs).reduce((o, [name, bi]) => ({...o, [bi]: ais[name] || ''}), {});
- const bos = Object.entries(block.outputs || {}).reduce((o, [name, bo]) => ({...o, [bo]: aos[name] || ''}), {});
-
- return [bis, bos];
-};
-
-// generate a new lock map for the given toolchain
-const genLockMap = (toolchain: any): LockMap => [...toolchain.contents.datasets, ...toolchain.contents.blocks, ...toolchain.contents.analyzers]
-.map(b => b.name)
-.reduce((o, name) => ({...o, [name]: false}), {});
-
-// checks if the given object is valid for the current entity given the i/o types and inferred types map
-const isValidEntity = (
- entityName: string,
- blockTcEntity: {inputs?: [], outputs?: []} = {},
- possibleObj: {inputs: any, outputs: any} = {inputs:{},outputs:{}},
- inferredTypes = {}
-): boolean => {
- const hasInputs = Array.isArray(blockTcEntity.inputs);
- const hasOutputs = Array.isArray(blockTcEntity.outputs);
- if(!hasInputs && Object.keys(possibleObj.inputs).length > 0)
- return false;
- if(!hasOutputs && Object.keys(possibleObj.outputs).length > 0)
- return false;
- if(hasInputs && blockTcEntity.inputs.length !== Object.keys(possibleObj.inputs).length)
- return false;
- if(hasInputs && hasOutputs &&
- blockTcEntity.outputs.length !== Object.keys(possibleObj.outputs).length
- )
- return false;
-
- if(inferredTypes.hasOwnProperty(entityName)){
- if(inferredTypes[entityName][0] !== undefined){
- const remainingEntityInputTypes = Object.values(possibleObj.inputs);
- const remainingInferredInputTypes = Object.values(inferredTypes[entityName][0]).filter(t => t !== '');
- while(remainingInferredInputTypes.length > 0){
- const it = remainingInferredInputTypes.pop();
- if(!remainingEntityInputTypes.includes(it))
- return false;
- remainingEntityInputTypes.splice(remainingEntityInputTypes.indexOf(it), 1);
- }
- }
-
- if(inferredTypes[entityName][1] !== undefined){
- const remainingEntityOutputTypes = Object.values(possibleObj.outputs);
- const remainingInferredOutputTypes = Object.values(inferredTypes[entityName][1]).filter(t => t !== '');
- while(remainingInferredOutputTypes.length > 0){
- const it = remainingInferredOutputTypes.pop();
- if(!remainingEntityOutputTypes.includes(it))
- return false;
- remainingEntityOutputTypes.splice(remainingEntityOutputTypes.indexOf(it), 1);
- }
- }
- }
-
- return true;
-};
-
-const dbSetIsValidForTcDataset = (dbSet, tcDs) => {
- if(Object.keys(dbSet.outputs).length < tcDs.outputs.length)
- return false;
- if(!tcDs.outputs.reduce((b, output) => b && dbSet.outputs.hasOwnProperty(output), true))
- return false;
- return true;
-};
-
-// maps key strings to value strings via levenshtein distances
-// must have the same # of keys as vals
-const levMapStrings = (keyArr: string[], valArr: string[]): { [string]: string } => {
- if(keyArr.length !== valArr.length){
- throw new Error(`Cannot lev map arrays of different lengths!`);
- }
-
- const keys = [...keyArr];
- const vals = [...valArr];
- const map = {};
-
- //console.log(keys);
- //console.log(vals);
-
- while(keys.length > 0){
- const scores = {};
- const matches = {};
- for(const k of keys){
- scores[k] = 10000;
- matches[k] = 'notfound';
- for(const v of vals){
- const score = lev.get(k, v);
- if(score < scores[k]){
- scores[k] = score;
- matches[k] = v;
- }
- }
- }
-
- let chosenKey = keys[0];
- let bestScore = 10000;
- for(const k of keys){
- if(scores[k] < bestScore){
- chosenKey = k;
- bestScore = scores[k];
- }
- }
-
- map[chosenKey] = matches[chosenKey];
- keys.splice(keys.indexOf(chosenKey), 1);
- vals.splice(vals.indexOf(matches[chosenKey]), 1);
- //console.log(map);
- }
-
- const orderedMap = {};
- for(const k of keyArr){
- orderedMap[k] = map[k];
- }
-
- //console.log(orderedMap);
- return orderedMap;
-};
-
-type EnvironmentConfigProps = {
- envInfo: {
- name: string,
- version: string,
- },
- queue: string,
- availableEnvs: { [string]: BeatEnvironment },
- updateEnvInfo: (name: string, version: string) => any,
- updateQueue: (queue: string) => any,
- disabled?: boolean,
-};
-
-const formatEnv = (name, version) => `${ name } (${ version })`;
-const EnvironmentConfig = ({ envInfo, queue, availableEnvs, updateEnvInfo, updateQueue, disabled = false }: EnvironmentConfigProps) => {
- const eObjs = Object.values(availableEnvs).map(e => ({[formatEnv(e.name, e.version)]: Object.keys(e.queues)}));
- const envQueues = Object.assign({}, ...eObjs);
- const currEnv = formatEnv(envInfo.name, envInfo.version);
- const queues = envQueues[currEnv];
- return (
- <FormGroup row>
- <Col>
- <Label>
- <InfoTooltip
- id='envTooltip'
- info={`When executing an experiment in a docker-ized execution system (on BEAT web or in beat.cmdline using the "--docker" flag), there are certain Python environments available to run the experiment in. To choose a non-default environment, select the environment (and queue) here.`}
- >
- Environment Name
- </InfoTooltip>
- </Label>
- <Input
- type='select'
- className='env custom-select'
- value={currEnv}
- onChange={e => {
- // deconstruct selected env
- const rx = /^(.*) \((.*)\)$/;
- const res = rx.exec(e.target.value);
- if(!res)
- return;
- const [n, v] = res.slice(1, 3);
- updateEnvInfo(n, v);
- }}
- placeholder='Environment'
- disabled={disabled}
- >
- <option value={''}>Environment...</option>
- {
- Object.keys(envQueues).map((name, i) =>
- <option key={i} value={name}>{ name }</option>
- )
- }
- </Input>
- </Col>
- { Array.isArray(queues) && queues.length > 0 &&
- <Col>
- <Label>
- <InfoTooltip
- id='queueTooltip'
- info={`The "queue" refers to the job queue to put the experiment in once a user decides to run it. This setting currently is only used on the BEAT web platform, and has no effect if ran through beat.cmdline.`}
- >
- Queue
- </InfoTooltip>
- </Label>
- <Input
- type='select'
- className='queue custom-select'
- value={queue}
- onChange={e => updateQueue(e.target.value)}
- placeholder='Queue'
- disabled={disabled}
- >
- {
- (queues).map((queue, i) =>
- <option key={i} value={queue}>{ queue }</option>
- )
- }
- </Input>
- </Col>
- }
- </FormGroup>
- );
-};
-
-export class ExperimentEditor extends React.Component<Props, State> {
- constructor(props: Props) {
- super(props);
- }
-
- state = {
- lockMap: genLockMap(this.props.toolchain),
- activeBlockInfo: {
- name: undefined,
- set: undefined,
- },
- disableTypeInference: false,
- }
-
- setContents = (newContents: any) => {
- this.props.updateFunc({
- ...this.props.data,
- contents: {
- 'description': this.props.data.contents['description'],
- ...newContents,
- }
- });
- }
-
- // handles left clicking on a block
- handleBlockClick = (blockName: string, set: BlockSet) => {
- const newMBI = {
- set,
- name: blockName
- };
- this.setState({
- activeBlockInfo: newMBI,
- });
-
- setTimeout(() => {
- const elForm = document.querySelector(`.${ set === 'datasets' ? 'dataset' : 'block' }_${ blockName }`);
- if(!elForm){
- return;
- }
- elForm.scrollIntoView(true);
- }, 50);
- }
-
- setLockMap = (name: string, value: boolean) => {
- this.setState((prevState, props) => ({
- lockMap: {
- ...prevState.lockMap,
- [name]: value,
- },
- }));
- }
-
- // gets parameter data for all the blocks with selected algorithms
- getParameterObjs = (): any[] => {
- const algs = [...this.props.normalBlocks, ...this.props.analyzerBlocks];
- return Object.entries({...this.props.data.contents.blocks, ...this.props.data.contents.analyzers})
- .map(([bName, block]) => algs.find(a => a.name === block.algorithm))
- .filter(a => a !== null && a !== undefined && a.contents.parameters !== undefined && Object.keys(a.contents.parameters).length > 0)
- .map(a => [a.name, a.contents.parameters])
- ;
- }
-
- // tries to infer the types of inputs & outputs given the structure of the toolchain,
- // the algorithms currently chosen for blocks,
- // and the database/protocol/set currently chosen for datasets.
- // Does forward (from datasets to analyzers) and backward (from analyzers to datasets).
- getConnectionInferredTypes = (): any => {
- const isLocked = (name) => !this.state.disableTypeInference && this.state.lockMap[name];
-
- const dsTypes = Object.entries(this.props.data.contents.datasets)
- .reduce((o, [name, ds]) => {
- const d = this.props.datasets.find(pds => datasetFieldToString(pds) === datasetFieldToString(ds));
- const outputs = d ? d.outputs : {};
- return {
- ...o,
- [name]: [{}, outputs]
- };
- }, {});
-
- const nTypes = Object.entries(this.props.data.contents.blocks)
- .filter(([name, block]) => isLocked(name))
- .reduce((o, [name, block]) => ({
- ...o,
- [name]: getBlockIOTypes(block, this.props.normalBlocks),
- }), {});
-
- const aTypes = Object.entries(this.props.data.contents.analyzers)
- .filter(([name, block]) => isLocked(name))
- .reduce((o, [name, block]) => ({
- ...o,
- [name]: getBlockIOTypes(block, this.props.analyzerBlocks),
- }), {});
-
- const missingDatasets = [...this.props.toolchain.contents.datasets]
- .filter(ds => !dsTypes.hasOwnProperty(ds.name))
- .reduce((o, ds) => ({
- ...o,
- [ds.name]: [{}, ds.outputs.reduce((o, out) => ({...o, [out]: ''}), {})]
- }), {});
-
- const missingBlocks = Object.entries({
- ...this.props.data.contents.blocks,
- ...this.props.data.contents.analyzers
- })
- .filter(([name, block]) => !nTypes.hasOwnProperty(name) && !aTypes.hasOwnProperty(name))
- .reduce((o, [name, block]) => ({...o, [name]: getBlockIOTypes(block, [...this.props.normalBlocks, ...this.props.analyzerBlocks])}), {});
-
- const inferredCache = Object.keys({...missingDatasets, ...missingBlocks}).reduce((o, name) => ({...o, [name]: []}), {});
-
- const getSetTypes = (entityName: string) => {
- if(dsTypes.hasOwnProperty(entityName))
- return dsTypes[entityName];
- if(nTypes.hasOwnProperty(entityName))
- return nTypes[entityName];
- if(aTypes.hasOwnProperty(entityName))
- return aTypes[entityName];
- return [{}, {}];
- };
-
- // false === forwards, inferring input types
- // true === backwards, inferring output types
- const calcInferredType = (entityName: string, forwardsOrBackwards: boolean): [any, any][] => {
- //forwards
- if(!forwardsOrBackwards) {
- const connectionsTo = this.props.toolchain.contents.connections.filter(c => c.to.split('.')[0] === entityName);
- const types = connectionsTo.map(c => {
- const [bName, oName] = c.from.split('.');
- const iName = c.to.split('.')[1];
- const fromTypes = getSetTypes(bName)[1];
- return [iName, fromTypes[oName] || ''];
- })
- .reduce((o, [iName, type]) => ({...o, [iName]: o.hasOwnProperty(iName) ? (o[iName] === '' ? type : o[iName]) : type}), {});
- inferredCache[entityName] = [types, inferredCache[entityName][1]];
- } else {
- const connectionsFrom = this.props.toolchain.contents.connections.filter(c => c.from.split('.')[0] === entityName);
- const types = connectionsFrom.map(c => {
- const [bName, iName] = c.to.split('.');
- const oName = c.from.split('.')[1];
- const toTypes = getSetTypes(bName)[0];
- return [oName, toTypes[iName] || ''];
- })
- .reduce((o, [oName, type]) => ({...o, [oName]: o.hasOwnProperty(oName) ? (o[oName] === '' ? type : o[oName]) : type}), {});
- inferredCache[entityName] = [inferredCache[entityName][0], types];
- }
-
- return inferredCache[entityName];
- };
-
-
- Object.keys({...missingBlocks, ...missingDatasets})
- .forEach(name => {
- calcInferredType(name, false);
- calcInferredType(name, true);
- });
-
- return inferredCache;
- };
-
- // finds any issues/errors/misconfiguration throughout the experiment. things it checks:
- // - whether a block doesnt have a dataset/algorithm assigned yet
- // - whether a block with an algorithm doesnt have an input/output assigned yet
- // - whether a connection of a block has different types at the output and input
- getErrorMap = (): {
- dataSourceMissing: string[],
- algorithmMissing: string[],
- ioMissing: string[],
- } => {
- const dataSourceMissing = Object.entries(this.props.data.contents.datasets)
- .filter(([name, ds]) => ds.set === '')
- .map(([name, b]) => name)
- ;
-
- const algorithmMissing = [
- ...Object.entries(this.props.data.contents.blocks),
- ...Object.entries(this.props.data.contents.analyzers),
- ].filter(([name, b]) => b.algorithm === '')
- .map(([name, b]) => name)
- ;
-
- const ioMissing = [
- ...Object.entries(this.props.data.contents.blocks),
- ...Object.entries(this.props.data.contents.analyzers),
- ].filter(([name, b]) => {
- if(b.algorithm === '')
- return false;
- const inputs = Object.values(b.inputs);
- if(inputs.includes('') || Array.from(new Set(inputs)).length !== inputs.length)
- return true;
- if(b.hasOwnProperty('outputs')){
- const outputs = Object.values(b.outputs);
- if(outputs.includes('') || Array.from(new Set(outputs)).length !== outputs.length)
- return true;
- }
- return false;
- })
- .map(([name, b]) => name)
- ;
-
- const dsTypes = Object.entries(this.props.data.contents.datasets)
- .reduce((o, [name, ds]) => {
- const d = this.props.datasets.find(pds => datasetFieldToString(pds) === datasetFieldToString(ds));
- const outputs = d ? d.outputs : {};
- return {
- ...o,
- [name]: [{}, outputs]
- };
- }, {});
-
- const nTypes = Object.entries(this.props.data.contents.blocks)
- .reduce((o, [name, block]) => ({
- ...o,
- [name]: getBlockIOTypes(block, this.props.normalBlocks),
- }), {});
-
- const aTypes = Object.entries(this.props.data.contents.analyzers)
- .reduce((o, [name, block]) => ({
- ...o,
- [name]: getBlockIOTypes(block, this.props.analyzerBlocks),
- }), {});
- // returns the connection ids instead of block names
- const incompatibleConnectionTypes = this.props.toolchain.contents.hasOwnProperty('connections') ?
- this.props.toolchain.contents.connections.map(c => {
- const [fromBlock, fromOutput] = c.from.split('.');
- const [toBlock, toInput] = c.to.split('.');
- const fromTypes = dsTypes[fromBlock] || nTypes[fromBlock];
- if(!fromTypes)
- return false;
- const fromType = fromTypes[1][fromOutput];
- const toTypes = dsTypes[toBlock] || nTypes[toBlock];
- if(!toTypes)
- return false;
- const toType = toTypes[0][toInput];
- if(!fromType || !toType)
- return false;
- if(fromType === toType)
- return false;
- return connectionToId(c);
- }).filter(id => id) :
- []
- ;
-
- return {
- dataSourceMissing,
- algorithmMissing,
- ioMissing,
- incompatibleConnectionTypes,
- };
- };
-
- renderDatasets = () => (
- <FormGroup className='datasets'>
- <FormGroup className='d-flex'>
- <h3 className='mr-2'>
- <InfoTooltip
- id='datasetsTooltip'
- info={`Assign sets from database protocols to your dataset blocks. Or, assign all your dataset blocks at once using a compatible database protocol.`}
- >
- Datasets
- </InfoTooltip>
- </h3>
- <Input
- type='select'
- className='custom-select'
- value={JSON.stringify(sortObject(this.props.data.contents.datasets))}
- onChange={e => {
- const str = e.target.value;
-
- const newDs = JSON.parse(str);
- //console.log(newDs);
- this.setContents({...this.props.data.contents, datasets: newDs});
- /*
- for(const dataset in this.props.data.contents.datasets){
- this.setLockMap(dataset, true);
- }
- */
- }}
- >
- <option value=''>Protocol...</option>
- {
- Object.entries(
- this.props.datasets
- .reduce((o, ds) => {
- const key = datasetProtocolFieldToString(ds);
- return {
- ...o,
- [key]: [
- ...(o[key] || []),
- ds
- ]
- };
- }, {})
- )
- .map(([dbProtStr, sets]) => {
- const enoughSets = sets.length == Object.keys(this.props.data.contents.datasets).length;
- if(!enoughSets)
- return [dbProtStr, false];
-
- // least to greatest outputs len
- const tcDss = [...this.props.toolchain.contents.datasets]
- .sort((a, b) => a.outputs.length - b.outputs.length);
-
- const newDataset = {};
- // start at greatest go to least
- while(tcDss.length > 0){
- const tcDs = tcDss.pop();
- let setsIdx = sets.findIndex(set => set.set === tcDs.name && dbSetIsValidForTcDataset(set, tcDs));
- if(setsIdx === -1){
- const validSets = sets.filter(set => dbSetIsValidForTcDataset(set, tcDs));
- let bestScore = 10000;
- let bestMatch = 'notfound';
- for(const s of validSets){
- const score = lev.get(tcDs.name, s.set);
- if(score < bestScore){
- bestScore = score;
- bestMatch = s;
- }
- }
- setsIdx = sets.findIndex(set => set == bestMatch);
- }
- if(setsIdx === -1)
- return [dbProtStr, false];
-
- const dbSet = sets.splice(setsIdx, 1)[0];
- newDataset[tcDs.name] = {
- set: dbSet.set,
- protocol: dbSet.protocol,
- database: dbSet.database,
- };
- }
- return [dbProtStr, newDataset];
- })
- .filter(([dbProtStr, dss]) => dss !== false)
- .map(([dbProtStr, dss], i) => <option key={i} value={JSON.stringify(sortObject(dss))}>{dbProtStr}</option>)
- }
- </Input>
- </FormGroup>
- {
- (Object.entries(this.props.data.contents.datasets): [string, any][])
- .sort(([n1, ds1], [n2, ds2]) => n1 > n2 ? 1 : -1)
- .map(([name, dataset], i, dEntries) => {
- const inferredTypes = this.getConnectionInferredTypes();
- const tcDataset = this.props.toolchain.contents.datasets.find(d => d.name === name);
- const dsString = datasetFieldToString(dataset);
- return (
- <FormGroup row key={i} className={`dataset${ i } dataset_${ name }`}>
- <Label sm={4}>
- { name }
- {' '}
- <Badge
- title={`This dataset provides the "${ name }" synchronization channel.`}
- color='info'
- >
- { name }
- </Badge>
- {/*
- {' '}
- <Button
- color={this.state.lockMap[name] ? 'primary' : 'secondary'}
- title={`When unlocked, connected blocks will not restrict their available algorithms to those compatible with this dataset's output types. When locked, connected blocks will take into account this dataset's output types.`}
- onClick={() => {
- this.setLockMap(name, !this.state.lockMap[name] && dataset.set !== '');
- }}
- >
- { this.state.lockMap[name] ? 'Locked' : 'Unlocked' }
- </Button>
- */}
- </Label>
- <Col sm={8}>
- <Input
- type='select'
- className='custom-select'
- valid={dsString !== datasetFieldToString({database:'',protocol:'',set:''})}
- value={dsString}
- onChange={e => {
- const str = e.target.value;
- const res = rxStringToDataset.exec(str) || [];
- const ds = {
- set: res[2] || '',
- protocol: res[1] || '',
- database: res[3] || '',
- };
-
- const newDs = {...this.props.data.contents.datasets, [name]: ds};
- this.setContents({...this.props.data.contents, datasets: newDs});
- //this.setLockMap(name, true);
- }}
- >
- <option value=''>Dataset...</option>
- {
- this.props.datasets
- .filter(ds => dbSetIsValidForTcDataset(ds, tcDataset))
- .filter(ds => isValidEntity(
- name,
- tcDataset,
- {outputs: ds.outputs, inputs: {}},
- inferredTypes
- ))
- .map(ds => datasetFieldToString(ds))
- .map((str, i) =>
- <option key={i} value={str}>{ str }</option>
- )
- }
- </Input>
- </Col>
- </FormGroup>
- );
- })
- }
- </FormGroup>
- );
-
- // update a block's data (and the globals object, if it changed)
- updateBlock = (blockName: string, isAnalyzer: boolean, newBlock: any, globals: any = this.props.data.contents.globals) => {
- if(isAnalyzer)
- delete newBlock.outputs;
-
- const bKey = isAnalyzer ? 'analyzers' : 'blocks';
- const newBlocks = copyObj(this.props.data.contents[bKey]);
- newBlocks[blockName] = newBlock;
- this.setContents({
- ...this.props.data.contents,
- [bKey]: newBlocks,
- globals,
- });
- }
-
- // renders the currently selected block to edit, if any
- renderBlock = (blockName: string, block: any, isAnalyzer: boolean, key: number) => {
- // gets the block info from the tc
- const tcBlock = isAnalyzer ? this.props.toolchain.contents.analyzers.find(b => b.name === blockName) : this.props.toolchain.contents.blocks.find(b => b.name === blockName);
- // gets the possible algorithms
- const algorithms = isAnalyzer ? this.props.analyzerBlocks : this.props.normalBlocks;
-
- // finds the current algorithm, if any
- const alg = algorithms.find(nb => nb.name === block.algorithm) || {contents: {groups: []}};
- // gets the input & output info of the current alg
- const [ inputs, outputs ] = algIOs(alg);
-
- // calculates the inferred types throughout the experiment
- const inferredTypes = this.getConnectionInferredTypes();
-
- // filters through the algs based on shape (input/output count) and type inferrence
- // to get the list of possible algs for this block
- const possibleAlgorithms = algorithms.filter(pa => {
- const [iAlg, oAlg] = algIOs(pa);
- return isValidEntity(blockName, tcBlock, {inputs: iAlg, outputs: oAlg}, inferredTypes);
- });
-
- // func to update the exp's block info
- const updateBlock = (newBlock: any, globals: any = this.props.data.contents.globals) =>
- this.updateBlock(blockName, isAnalyzer, newBlock, globals);
-
- // get info that could be from the block or from the global settings
- const envInfo = block.environment || this.props.data.contents.globals.environment;
- const queue = block.queue || this.props.data.contents.globals.queue;
- const envDisabled = !block.hasOwnProperty('environment');
-
- const getClearedGlobals = () => {
- const globals = copyObj(this.props.data.contents.globals);
- // if the old algorithm had parameters and no other block is using that alg,
- // delete the global param defaults for the old alg
- if(globals.hasOwnProperty(block.algorithm) &&
- [...this.props.toolchain.contents.analyzers, ...this.props.toolchain.contents.blocks]
- .filter(b => b.algorithm === block.algorithm).length <= 1)
- delete globals[block.algorithm];
- return globals;
- };
-
- return (
- <FormGroup key={key} className={`block${ key } block_${ blockName }`}>
- <h4>
- <InfoTooltip
- id='blockTooltip'
- info={`Choose a compatible algorithm for this block to run when execution reaches this place in the toolchain. When you choose an algorithm, inputs & outputs in the algorithm are automatically mapped to the inputs & outputs of the block - but make sure to check this mapping and manually fix incorrect assignments.`}
- >
- Block <pre className='preInline'>{ blockName }</pre>
- </InfoTooltip>
- {' '}
- <Badge
- title={`Block is synchronized to the "${ tcBlock.synchronized_channel }" channel`}
- color='info'
- >{ tcBlock.synchronized_channel }</Badge>
- </h4>
- <FormGroup row>
- <Col sm='2'>
- <Label>Execution Info</Label>
- <Button
- color={envDisabled ? 'secondary' : 'warning'}
- onClick={() => {
- if(envDisabled)
- updateBlock({
- ...block,
- environment: {
- name: envInfo.name,
- version: envInfo.version,
- },
- queue: queue,
- });
- else {
- const newBlock = copyObj(block);
- delete newBlock.environment;
- delete newBlock.queue;
- updateBlock(newBlock);
- }
- }}
- title={`Toggle whether or not the block is using the global default value for execution information, or is using a custom setting for this specific block.`}
- >
- { envDisabled ? 'Using global defaults' : 'Using block value' }
- </Button>
- </Col>
- <Col>
- <EnvironmentConfig
- envInfo={envInfo}
- queue={queue}
- availableEnvs={this.props.environments}
- disabled={envDisabled}
- updateEnvInfo={(name, version) => {
- const env = Object.values(this.props.environments).find(e => e.name === name && e.version === version);
- if(!env)
- return;
- const queue = Object.keys(env.queues)[0];
- updateBlock({
- ...block,
- environment: {
- name,
- version,
- },
- queue,
- });
- }}
- updateQueue={queue => updateBlock({
- ...block,
- queue,
- })}
- />
- </Col>
- </FormGroup>
- <FormGroup className='algorithm'>
- <Label>
- Algorithm
- </Label>
- <FormGroup row>
- <Col>
- <Input
- type='select'
- className='custom-select'
- valid={block.algorithm !== ''}
- value={block.algorithm}
- onChange={e => {
- // user selected a different algorithm
- const str = e.target.value;
- // find the alg or use a dummy algorithm instead
- const alg = algorithms.find(nb => nb.name === str) || {name: '', contents: {groups: []}};
- const [ inputs, outputs ] = algIOs(alg);
- // try to map the IOs from the algorithm to the block via names
- const findCloseIOMatch = (s: string, arr: string[]): string => {
- if(arr.length === 1)
- return arr[0];
- const findRes = arr.find(str => str.includes(s));
- if(findRes !== undefined)
- return findRes;
- return '';
- };
-
- // create the new block obj with the new alg
- const thisBlock = {
- ...block,
- algorithm: str,
- };
- // assign new inputs
- if(tcBlock.inputs)
- thisBlock.inputs = levMapStrings(Object.keys(inputs), tcBlock.inputs);
- // assign new outputs
- if(tcBlock.outputs)
- thisBlock.outputs = levMapStrings(Object.keys(outputs), tcBlock.outputs);
-
- // setup the parameters (erase & create stuff)
- const globals = getClearedGlobals();
-
- // if the new alg has parameters, gen the global defaults for the params
- if(alg.contents.parameters && Object.keys(alg.contents.parameters).length > 0)
- globals[alg.name] = {
- ...Object.entries(alg.contents.parameters || {})
- .map(([pName, param]) => ({[pName]: getDefaultParameterValue(param)}))
- .reduce((o, p) => ({...o, ...p}), {}),
- ...this.props.data.contents.globals[alg.name],
- };
-
- updateBlock(thisBlock, globals);
- //this.setLockMap(blockName, true);
- }}
- >
- <option value=''>Algorithm...</option>
- {
- possibleAlgorithms
- .map(nb => nb.name)
- .map((str, i) =>
- <option key={i} value={str}>{ str }</option>
- )
- }
- </Input>
- </Col>
- <Col sm='auto'>
- { !isAnalyzer &&
- <React.Fragment>
- <Button
- color='primary'
- disabled={block.algorithm === ''}
- title={`Copies the algorithm & IO mappings to all unconfigured blocks with the same inputs & outputs`}
- onClick={() => {
- // copy the algorithm and input/output mappings to blocks
- // that are the same except for the block name and dont have an algorithm assigned already
- const targetBlocks = this.props.toolchain.contents.blocks
- // not the block being copied from
- .filter(b => b.name !== blockName)
- // same IO
- .filter(b => JSON.stringify(b.inputs) === JSON.stringify(tcBlock.inputs))
- .filter(b => JSON.stringify(b.outputs) === JSON.stringify(tcBlock.outputs))
- .map(b => b.name)
- ;
- //console.log(targetBlocks);
-
- // because the target blocks have the exact same inputs/outputs as the current block
- // we dont need to re-compute the block object that we will copy!
- // instead, just reuse the current block object and assign it to all
- // the target blocks.
- // also, because all these blocks are the same algorithm as the current block
- // we dont need to mess with the globals.
-
- const newBlocks = copyObj(this.props.data.contents.blocks);
- targetBlocks.forEach(bName => { newBlocks[bName] = copyObj(block); });
- this.setContents({
- ...this.props.data.contents,
- blocks: newBlocks,
- });
- }}
- >
- Copy to similar blocks
- </Button>
- {' '}
- </React.Fragment>
- }
- <Button
- color='secondary'
- title={`Clears the block data, resetting the selected block.`}
- onClick={() => {
- const newBlock = copyObj(block);
- const newGlobals = getClearedGlobals();
- newBlock.algorithm = '';
- if(newBlock.inputs)
- newBlock.inputs = {};
- if(newBlock.outputs)
- newBlock.outputs = {};
- if(newBlock.parameters)
- newBlock.parameters = {};
-
- updateBlock(newBlock, newGlobals);
- }}
- >
- Reset
- </Button>
- </Col>
- </FormGroup>
- </FormGroup>
- { Object.entries(alg.contents.parameters || {}).length > 0 && <h5>Parameters</h5> }
- {
- Object.entries(alg.contents.parameters || {}).map(([pName, paramObj], i) => {
- const isTethered = !block.parameters.hasOwnProperty(pName);
- const globalParams = this.props.data.contents.globals[alg.name];
- const currVal = block.parameters[pName] || globalParams[pName];
-
- const deleteParam = () => {
- const thisBlock = {...block,
- };
- delete block.parameters[pName];
- updateBlock(thisBlock);
- };
- const updateParam = (val: ParameterValue) => {
- const thisBlock = {...block,
- parameters: {...block.parameters,
- [pName]: val
- }
- };
- updateBlock(thisBlock);
- };
-
- return (
- <FormGroup key={i} className={`parameter${ i }`}>
- <Label>
- { pName }
- </Label>
- <FormGroup row>
- <Col sm='auto'>
- <Button
- color={isTethered ? 'secondary' : 'warning'}
- onClick={() => {
- if(isTethered){
- updateParam(currVal);
- } else {
- deleteParam();
- }
- }}
- title={`Toggle whether or not the block is using the global default value for this parameter, or is using a custom value for this specific block.`}
- >
- { isTethered ? 'Using global defaults' : 'Using block value' }
- </Button>
- </Col>
- <Col>
- <ParameterConsume
- parameter={paramObj}
- currVal={currVal}
- updateFunc={updateParam}
- />
- </Col>
- </FormGroup>
- </FormGroup>
- );
- })
- }
- <h5>Inputs</h5>
- {
- Object.entries(inputs).map(([iName, type], i, inputs) => {
- const iLabel = `${ iName } (${ type })`;
- const value = block.inputs[iName] || '';
- const foundCount = Object.values(block.inputs).filter(s => s === value).length;
- return (
- <FormGroup row key={i} className={`input${ i }`}>
- <Label sm={6}>{ iLabel }</Label>
- <Col sm={6}>
- <Input
- type='select'
- className='custom-select'
- valid={value !== '' && foundCount === 1}
- value={value}
- onChange={e => {
- const str = e.target.value;
- const thisBlock = {
- ...block,
- inputs: {...block.inputs, [iName]: str}
- };
- for(const key in block.inputs){
- if(block.inputs[key] === str)
- thisBlock.inputs[key] = value;
- }
- updateBlock(thisBlock);
- }}
- >
- <option value=''>Input...</option>
- {
- tcBlock.inputs
- .map((str, i) =>
- <option key={i} value={str}>{ str }</option>
- )
- }
- </Input>
- </Col>
- </FormGroup>
- );
- })
- }
- { Object.keys(outputs).length > 0 && <h5>Outputs</h5> }
- {
- Object.entries(outputs).map(([oName, type], i) => {
- const oLabel = `${ oName } (${ type })`;
- const value = block.outputs[oName] || '';
- const foundCount = Object.values(block.outputs).filter(s => s === value).length;
- return (
- <FormGroup row key={i} className={`output${ i }`}>
- <Label sm={6}>{ oLabel }</Label>
- <Col sm={6}>
- <Input
- type='select'
- className='custom-select'
- valid={value !== '' && foundCount === 1}
- value={value}
- onChange={e => {
- const str = e.target.value;
- const thisBlock = {
- ...block,
- outputs: {...block.outputs, [oName]: str}
- };
- for(const key in block.outputs){
- if(block.outputs[key] === str)
- thisBlock.outputs[key] = value;
- }
- updateBlock(thisBlock);
- }}
- >
- <option value=''>Output...</option>
- {
- tcBlock.outputs
- .map((str, i) =>
- <option key={i} value={str}>{ str }</option>
- )
- }
- </Input>
- </Col>
- </FormGroup>
- );
- })
- }
-
- </FormGroup>
- );
- }
-
- renderBlocks = () => this.state.activeBlockInfo.set === 'blocks' && (
- <FormGroup>
- {
- (Object.entries(this.props.data.contents.blocks): [string, any][])
- .filter(([n, b]) => n === this.state.activeBlockInfo.name)
- .sort(([n1, ds1], [n2, ds2]) => n1 > n2 ? 1 : -1)
- .map(([name, blk], i) =>
- this.renderBlock(name, blk, false, i)
- )
- }
- </FormGroup>
- );
-
- renderAnalyzers = () => this.state.activeBlockInfo.set === 'analyzers' && (
- <FormGroup>
- <h3>Analyzers</h3>
- {
- (Object.entries(this.props.data.contents.analyzers): [string, any][])
- .filter(([n, b]) => n === this.state.activeBlockInfo.name)
- .sort(([n1, ds1], [n2, ds2]) => n1 > n2 ? 1 : -1)
- .map(([name, blk], i) =>
- this.renderBlock(name, blk, true, i)
- )
- }
- </FormGroup>
- )
-
- renderGlobals = () => {
- const paramObjs = this.getParameterObjs();
- return (
- <FormGroup className='globals'>
- <h3>
- <InfoTooltip
- id='globalSettingsTooltip'
- info={`These settings are for the entire experiment, not for a specific block.`}
- >
- Global Settings
- </InfoTooltip>
- </h3>
- <EnvironmentConfig
- envInfo={this.props.data.contents.globals.environment}
- queue={this.props.data.contents.globals.queue}
- availableEnvs={this.props.environments}
- updateEnvInfo={(name, version) => this.setContents({
- ...this.props.data.contents,
- globals: {
- ...this.props.data.contents.globals,
- environment: {
- ...this.props.data.contents.globals.environment,
- name,
- version,
- },
- queue: '',
- }
- })}
- updateQueue={queue => this.setContents({
- ...this.props.data.contents,
- globals: {
- ...this.props.data.contents.globals,
- queue,
- }
- })}
- />
- { paramObjs.length > 0 &&
- <h3>
- Algorithm Parameter Defaults
- </h3>
- }
- {
- paramObjs.map(([algName, ps], i) => (
- <FormGroup key={i} className={`globalParameter${ i }`}>
- <h4>{ algName }</h4>
- {
- Object.entries(ps).map(([pName, paramObj], j) => (
- <FormGroup key={j}>
- <Label for={`${ algName }/${ pName }`}>{ pName }</Label>
- <ParameterConsume
- name={`${ algName }/${ pName }`}
- parameter={paramObj}
- currVal={this.props.data.contents.globals[algName][pName]}
- updateFunc={(val: ParameterValue) => {
- const globals = {
- ...this.props.data.contents.globals,
- [algName]: {
- ...this.props.data.contents.globals[algName],
- [pName]: val
- }
- };
- this.setContents({
- ...this.props.data.contents,
- globals
- });
- }}
- />
- </FormGroup>
- ))
- }
- </FormGroup>
- ))
- }
- </FormGroup>
- );
- }
-
- renderGraphicalEditor = () => {
- const tc = this.props.toolchain;
- const {representation, blocks, datasets, analyzers, connections} = tc.contents;
- const groups = tc.extraContents ? tc.extraContents.groups : [];
- const expData = [
- ...Object.entries(this.props.data.contents.datasets)
- .map(([name, ds]) => ({ [name]: datasetFieldToString(ds) })),
- ...Object.entries(this.props.data.contents.blocks)
- .map(([name, b]) => ({ [name]: b.algorithm })),
- ...Object.entries(this.props.data.contents.analyzers)
- .map(([name, a]) => ({ [name]: a.algorithm })),
- ].reduce((o, data) => ({ ...o, ...data }), {});
- const errorMap = this.getErrorMap();
- const errorStrings: { [string]: string[] } = ((Object.entries(errorMap): any): [ string, string[] ][])
- .map(([ error, names ]) => names.reduce((o, n) => {
- let errorMessage = '';
- // messages need to be short enough to not be clipped (up to 1 char longer than the ioMissing message)
- switch(error){
- case 'dataSourceMissing':
- errorMessage = 'Data source not assigned!';
- break;
- case 'algorithmMissing':
- errorMessage = 'Algorithm not assigned!';
- break;
- case 'ioMissing':
- errorMessage = 'Input/output not assigned!';
- break;
- case 'incompatibleConnectionTypes':
- errorMessage = '. Connection has incompatible start/end types!';
- break;
- default:
- errorMessage = error;
- break;
- }
- return {...o, [n]: errorMessage};
- }, {}))
- .reduce((o, errors) => {
- Object.entries(errors).forEach(([name, errorString]) => {
- if(o.hasOwnProperty(name))
- o[name].push(errorString);
- else
- o[name] = [errorString];
- });
- return o;
- }, {});
-
- const scrollToGlobalSettings = (e) => {
- const elSettings = document.querySelector('.globals');
- if(!elSettings){
- return;
- }
- elSettings.scrollIntoView(true);
- };
-
- return (
- <FormGroup row>
- <Col sm={12}>
- <GraphicalEditor
- repData={representation || {blocks: {}, connections: {}, channel_colors: {}}}
- blocks={blocks || []}
- datasets={datasets || []}
- analyzers={analyzers || []}
- connections={connections || []}
- groups={groups}
- experimentData={expData}
- handleBlockClick={this.handleBlockClick}
- errorBlocks={errorStrings}
- focusBlocks={[this.state.activeBlockInfo.name || '']}
- handleBackgroundClick={scrollToGlobalSettings}
- />
- </Col>
- </FormGroup>
- );
- }
-
- render = () => (
- <div className='experimentEditor'>
- <div className='d-flex'>
- <Button
- className='mx-auto'
- outline
- color='secondary'
- onClick={() => this.props.saveFunc(this.props.data)}
- >
- Save Changes (Changes are <ValidSchemaBadge entity='experiment' obj={this.props.data} />)
- </Button>
- </div>
- <Form onSubmit={(e) => e.preventDefault()}>
- <FormGroup tag='fieldset'>
- <FormGroup>
- <Label>Short Description</Label>
- <Input
- type='text'
- className='expDescription'
- placeholder='Experiment description...'
- value={this.props.data.contents['description']}
- onChange={e => this.setContents({ ...this.props.data.contents, 'description': e.target.value})}
- />
- </FormGroup>
- </FormGroup>
- {/*
- <pre>{JSON.stringify(this.getConnectionInferredTypes(), null, 4)}</pre>
- */}
- { this.renderGraphicalEditor() }
- <FormGroup>
- <Button block outline
- onClick={e => {
- this.setState({ disableTypeInference: !this.state.disableTypeInference });
- }}
- title={`When assigning algorithms & datasets to blocks, the platform tries to infer types throughout the toolchain to filter the possibilities. If you don't want any filtering, you may turn this feature off to be able to select any compatible algorithm/dataset. You may re-enable filtering at any time by clicking the button again.`}
- >
- { this.state.disableTypeInference ? 'Enable' : 'Disable' } Type Inference
- </Button>
- </FormGroup>
- { this.state.activeBlockInfo.set === 'blocks' && this.renderBlocks() }
- { this.state.activeBlockInfo.set === 'analyzers' && this.renderAnalyzers() }
- { this.state.activeBlockInfo.set === 'datasets' && this.renderDatasets() }
- { this.renderGlobals() }
- </Form>
- </div>
- );
-}
-
-const mapStateToProps = (state, ownProps) => {
- const exps = Selectors.experimentGet(state);
- const data = exps[ownProps.index] || undefined;
- const tcName = data ? data.name.split('/').slice(1, 4).join('/') : '';
- const tc = Selectors.toolchainGet(state).find(t => t.name === tcName) || {
- name: '',
- contents: {
- blocks: [],
- analyzers: [],
- datasets: [],
- }
- };
- const normalBlocks = Selectors.normalBlocks(state);
- const analyzerBlocks = Selectors.analyzerBlocks(state);
-
- const obj = {
- experiments: exps,
- data: data || getValidObj({name: '', contents: {}}, tc, [normalBlocks, ...analyzerBlocks]),
- // algorithms for normal blocks
- normalBlocks,
- // algorithms for analyzer blocks
- analyzerBlocks,
- datasets: Selectors.flattenedDatabases(state),
- toolchain: tc,
- environments: Selectors.environmentsGet(state),
- };
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- console.log(`dispatching for ${ obj.name }`);
- dispatch(Actions[`experimentUpdate`](obj.name, obj));
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(ExperimentEditor);
diff --git a/conda/js/src/components/experiment/ExperimentEditor.spec.jsx b/conda/js/src/components/experiment/ExperimentEditor.spec.jsx
deleted file mode 100644
index 017ee392ddfbcb7caab93b133df3df2c3334fce9..0000000000000000000000000000000000000000
--- a/conda/js/src/components/experiment/ExperimentEditor.spec.jsx
+++ /dev/null
@@ -1,694 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import * as Selectors from '@store/selectors.js';
-import { ExperimentEditor as C } from '.';
-import { getValidExperimentObj as getValidObj } from '@helpers/beat';
-
-import testAlgs from '@test/test_algs.json';
-import testDbs from '@test/test_dbs.json';
-import testExps from '@test/test_exps.json';
-import testTcs from '@test/test_tcs.json';
-
-const envs = {
- 'Scientific Python 2.7': {
- name: 'Scientific Python 2.7',
- version: '1.0.0',
- queues: {
- Default: {}
- },
- packages: {}
- }
-};
-
-describe('<ExperimentEditor />', () => {
- let wrapper;
- const normalBlocks = Selectors.normalBlocks({ algorithm: testAlgs });
- const analyzerBlocks = Selectors.analyzerBlocks({ algorithm: testAlgs });
- const datasets = Selectors.flattenedDatabases({ database: testDbs });
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- describe('accepts', () => {
- const exps = [
- ].concat(testExps);
-
- exps.forEach(function(exp){
- if(exp.name !== 'user/user/single/1/single_add')
- return;
- const saveFunc = () => {};
- const updateFunc = () => {};
- const tc = testTcs.find(tc => exp.name.includes(tc.name));
-
- it(`${ exp.name }`, () => {
- wrapper = mount(
- <C
- data={exp}
- experiments={exps}
- normalBlocks={normalBlocks}
- analyzerBlocks={analyzerBlocks}
- datasets={datasets}
- toolchain={tc}
- saveFunc={saveFunc}
- environments={envs}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'experiments', 'normalBlocks', 'analyzerBlocks', 'datasets', 'toolchain', 'saveFunc', 'environments', 'updateFunc']
- );
- });
- });
- });
-
- describe('creates', () => {
- it(`user/user/single/1/single_add`, () => {
- const expName = 'user/user/single/1/single_add';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const tc = testTcs.find(tc => expName.includes(tc.name));
- wrapper = mount(
- <C
- data={getValidObj({name: expName, contents: {}}, tc, [...normalBlocks, ...analyzerBlocks])}
- experiments={[]}
- normalBlocks={normalBlocks}
- analyzerBlocks={analyzerBlocks}
- datasets={datasets}
- toolchain={tc}
- saveFunc={saveFunc}
- environments={envs}
- updateFunc={updateFunc}
- />
- );
-
- //console.log('doing name');
-
- expect(wrapper.props().data).to.have.property('name', expName);
-
- //console.log('finished name change, doing dataset');
-
- wrapper.find('svg #block_set').simulate('click');
- wrapper.find('div.dataset0 select').simulate('change', { target: { value: 'protocol/set (simple/1)'}});
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.deep.property('datasets', {
- 'set': {
- 'set': 'set',
- 'protocol': 'protocol',
- 'database': 'simple/1'
- }
- });
-
- //console.log('finished dataset, doing block');
-
- wrapper.find('svg #block_echo').simulate('click');
- expect(wrapper.find({ name: 'echo', set: 'blocks'}).find('.tcBlockBackground').prop('className')).to.include('highlighted');
- wrapper.find('div.block0 div.algorithm select').at(0).simulate('change', { target: { value: 'user/integers_add/1'}});
- expect(updateFunc.callCount).to.equal(2);
- expect(wrapper.props().data.contents).to.have.deep.property('blocks', {
- 'echo': {
- 'inputs': {
- 'in_data': 'in'
- },
- 'algorithm': 'user/integers_add/1',
- 'outputs': {
- 'out_data': 'out'
- },
- parameters: {}
- }
- });
-
- //console.log('finished block, doing analyzer');
-
- wrapper.find('svg #block_analysis').simulate('click');
- expect(wrapper.find({ name: 'analysis', set: 'analyzers'}).find('.tcBlockBackground').prop('className')).to.include('highlighted');
- wrapper.find('div.block0 div.algorithm select').at(0).simulate('change', { target: { value: 'user/integers_echo_analyzer/1'}});
- expect(updateFunc.callCount).to.equal(3);
- expect(wrapper.props().data.contents).to.have.deep.property('analyzers', {
- 'analysis': {
- 'inputs': {
- 'in_data': 'in'
- },
- 'algorithm': 'user/integers_echo_analyzer/1',
- parameters: {},
- }
- });
-
- //console.log('finished analyzer, doing env');
-
- wrapper.find('.globals select.env').simulate('change', { target: { value: 'Scientific Python 2.7 (1.0.0)'}});
- expect(updateFunc.callCount).to.equal(4);
- wrapper.find('.globals select.queue').simulate('change', { target: { value: 'Default'}});
- expect(updateFunc.callCount).to.equal(5);
- expect(wrapper.props().data.contents).to.have.deep.property('globals', {
- 'queue': 'Default',
- 'environment': {
- 'version': '1.0.0',
- 'name': 'Scientific Python 2.7'
- },
- 'user/integers_add/1': {
- offset: 1
- },
- });
-
- //console.log('finished env, doing cache check');
-
- expect(wrapper.props().data).to.be.deep.equal({
- 'name': 'user/user/single/1/single_add',
- 'contents': {
- description: '',
- 'analyzers': {
- 'analysis': {
- 'inputs': {
- 'in_data': 'in'
- },
- 'algorithm': 'user/integers_echo_analyzer/1',
- parameters: {},
- }
- },
- 'datasets': {
- 'set': {
- 'set': 'set',
- 'protocol': 'protocol',
- 'database': 'simple/1'
- }
- },
- 'blocks': {
- 'echo': {
- 'inputs': {
- 'in_data': 'in'
- },
- 'algorithm': 'user/integers_add/1',
- 'outputs': {
- 'out_data': 'out'
- },
- parameters: {}
- }
- },
- 'globals': {
- 'queue': 'Default',
- 'environment': {
- 'version': '1.0.0',
- 'name': 'Scientific Python 2.7'
- },
- 'user/integers_add/1': {
- offset: 1
- },
- }
- }
- });
- });
-
- // tests:
- // - assigning protocol for datasets
- // - copy block algs
- it('test/test/iris_advanced/1/iris', () => {
- const expName ='test/test/iris_advanced/1/iris';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const tc = testTcs.find(tc => expName.includes(tc.name));
- wrapper = mount(
- <C
- data={getValidObj({name: expName, contents: {}}, tc, [...normalBlocks, ...analyzerBlocks])}
- experiments={[]}
- normalBlocks={normalBlocks}
- analyzerBlocks={analyzerBlocks}
- datasets={datasets}
- toolchain={tc}
- saveFunc={saveFunc}
- environments={envs}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper.props().data).to.have.property('name', expName);
-
- //console.log('doing dataset');
-
- wrapper.find('svg #block_training_data').simulate('click');
- wrapper.find('div.datasets select').at(0).simulate('change', { target: { value: '{"testing_data":{"database":"iris/1","protocol":"Main","set":"testing"},"training_data":{"database":"iris/1","protocol":"Main","set":"training"}}'}});
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.deep.property('datasets', {
- 'testing_data': {
- 'database': 'iris/1',
- 'protocol': 'Main',
- 'set': 'testing'
- },
- 'training_data': {
- 'database': 'iris/1',
- 'protocol': 'Main',
- 'set': 'training'
- }
- });
-
- //console.log('finished dataset, doing preprocessor blocks');
-
- wrapper.find('svg #block_pre_training').simulate('click');
- expect(wrapper.find({ name: 'pre_training', set: 'blocks'}).find('.tcBlockBackground').prop('className')).to.include('highlighted');
- wrapper.find('div.block0 div.algorithm select').at(0).simulate('change', { target: { value: 'test/iris_preprocessor/1'}});
- //console.log('finished preprocessor_training, copying alg to other preprocessors');
- expect(updateFunc.callCount).to.equal(2);
- wrapper.find('div.block0 div.algorithm button').at(0).simulate('click');
- expect(updateFunc.callCount).to.equal(3);
-
- expect(wrapper.props().data.contents).to.have.deep.property('blocks', {
- 'pre_testing': {
- 'algorithm': 'test/iris_preprocessor/1',
- 'inputs': {
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'measurements': 'measurements'
- },
- 'parameters': {}
- },
- 'pre_training': {
- 'algorithm': 'test/iris_preprocessor/1',
- 'inputs': {
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'measurements': 'measurements'
- },
- 'parameters': {}
- },
- 'testing_alg': {
- 'algorithm': '',
- 'inputs': {
- 'lda_machine': '',
- 'measurements': ''
- },
- 'outputs': {
- 'scores': ''
- },
- 'parameters': {}
- },
- 'training_alg': {
- 'algorithm': '',
- 'inputs': {
- 'measurements': '',
- 'species': ''
- },
- 'outputs': {
- 'lda_machine': ''
- },
- 'parameters': {}
- }
- });
-
- //console.log('finished preprocessors, doing training');
-
- wrapper.find('svg #block_training_alg').simulate('click');
- expect(wrapper.find({ name: 'training_alg', set: 'blocks'}).find('.tcBlockBackground').prop('className')).to.include('highlighted');
- wrapper.find('div.block0 div.algorithm select').at(0).simulate('change', { target: { value: 'test/iris_training/1'}});
- expect(updateFunc.callCount).to.equal(4);
- expect(wrapper.props().data.contents).to.have.deep.property('blocks', {
- 'pre_testing': {
- 'algorithm': 'test/iris_preprocessor/1',
- 'inputs': {
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'measurements': 'measurements'
- },
- 'parameters': {}
- },
- 'pre_training': {
- 'algorithm': 'test/iris_preprocessor/1',
- 'inputs': {
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'measurements': 'measurements'
- },
- 'parameters': {}
- },
- 'testing_alg': {
- 'algorithm': '',
- 'inputs': {
- 'lda_machine': '',
- 'measurements': ''
- },
- 'outputs': {
- 'scores': ''
- },
- 'parameters': {}
- },
- 'training_alg': {
- 'algorithm': 'test/iris_training/1',
- 'inputs': {
- 'measurements': 'measurements',
- 'species': 'species'
- },
- 'outputs': {
- 'lda_machine': 'lda_machine'
- },
- 'parameters': {}
- }
- });
-
- //console.log('finished training, doing testing');
-
- wrapper.find('svg #block_testing_alg').simulate('click');
- expect(wrapper.find({ name: 'testing_alg', set: 'blocks'}).find('.tcBlockBackground').prop('className')).to.include('highlighted');
- wrapper.find('div.block0 div.algorithm select').at(0).simulate('change', { target: { value: 'test/iris_testing/1'}});
- expect(updateFunc.callCount).to.equal(5);
- expect(wrapper.props().data.contents).to.have.deep.property('blocks', {
- 'pre_testing': {
- 'algorithm': 'test/iris_preprocessor/1',
- 'inputs': {
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'measurements': 'measurements'
- },
- 'parameters': {}
- },
- 'pre_training': {
- 'algorithm': 'test/iris_preprocessor/1',
- 'inputs': {
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'measurements': 'measurements'
- },
- 'parameters': {}
- },
- 'testing_alg': {
- 'algorithm': 'test/iris_testing/1',
- 'inputs': {
- 'lda_machine': 'lda_machine',
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'scores': 'scores'
- },
- 'parameters': {}
- },
- 'training_alg': {
- 'algorithm': 'test/iris_training/1',
- 'inputs': {
- 'measurements': 'measurements',
- 'species': 'species'
- },
- 'outputs': {
- 'lda_machine': 'lda_machine'
- },
- 'parameters': {}
- }
- });
-
- //console.log('finished blocks, doing analyzer');
-
- wrapper.find('svg #block_analyzer').simulate('click');
- expect(wrapper.find({ name: 'analyzer', set: 'analyzers'}).find('.tcBlockBackground').prop('className')).to.include('highlighted');
- wrapper.find('div.block0 div.algorithm select').at(0).simulate('change', { target: { value: 'test/iris_analyzer/1'}});
- expect(updateFunc.callCount).to.equal(6);
- expect(wrapper.props().data.contents).to.have.deep.property('analyzers', {
- 'analyzer': {
- 'algorithm': 'test/iris_analyzer/1',
- 'inputs': {
- 'scores': 'scores',
- 'species': 'species'
- },
- 'parameters': {}
- }
- });
-
- //console.log('finished analyzer, doing cache check');
-
- expect(wrapper.props().data).to.be.deep.equal({
- 'name': 'test/test/iris_advanced/1/iris',
- 'contents': {
- 'description': '',
- 'analyzers': {
- 'analyzer': {
- 'algorithm': 'test/iris_analyzer/1',
- 'inputs': {
- 'scores': 'scores',
- 'species': 'species'
- },
- 'parameters': {}
- }
- },
- 'blocks': {
- 'pre_testing': {
- 'algorithm': 'test/iris_preprocessor/1',
- 'inputs': {
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'measurements': 'measurements'
- },
- 'parameters': {}
- },
- 'pre_training': {
- 'algorithm': 'test/iris_preprocessor/1',
- 'inputs': {
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'measurements': 'measurements'
- },
- 'parameters': {}
- },
- 'testing_alg': {
- 'algorithm': 'test/iris_testing/1',
- 'inputs': {
- 'lda_machine': 'lda_machine',
- 'measurements': 'measurements'
- },
- 'outputs': {
- 'scores': 'scores'
- },
- 'parameters': {}
- },
- 'training_alg': {
- 'algorithm': 'test/iris_training/1',
- 'inputs': {
- 'measurements': 'measurements',
- 'species': 'species'
- },
- 'outputs': {
- 'lda_machine': 'lda_machine'
- },
- 'parameters': {}
- }
- },
- 'datasets': {
- 'testing_data': {
- 'database': 'iris/1',
- 'protocol': 'Main',
- 'set': 'testing'
- },
- 'training_data': {
- 'database': 'iris/1',
- 'protocol': 'Main',
- 'set': 'training'
- }
- },
- 'globals': {
- 'queue': 'Default',
- 'environment': {
- 'name': 'Scientific Python 2.7',
- 'version': '0.0.4'
- }
- }
- }
- });
- });
- });
-
- describe('Regression Tests', () => {
- it(`clears the 'echo' & 'analysis' blocks from user/user/single/1/single_add`, () => {
- const expName = 'user/user/single/1/single_add';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const exp = testExps.find(exp => expName === exp.name);
- const tc = testTcs.find(tc => expName.includes(tc.name));
- wrapper = mount(
- <C
- data={getValidObj(exp, tc, [...normalBlocks, ...analyzerBlocks])}
- experiments={[]}
- normalBlocks={normalBlocks}
- analyzerBlocks={analyzerBlocks}
- datasets={datasets}
- toolchain={tc}
- saveFunc={saveFunc}
- environments={envs}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper.props().data).to.have.property('name', expName);
- expect(wrapper.props().data.contents).to.have.deep.property('blocks', {
- 'echo': {
- 'inputs': {
- 'in_data': 'in'
- },
- 'algorithm': 'user/integers_add/1',
- 'outputs': {
- 'out_data': 'out'
- },
- parameters: {}
- }
- });
-
- wrapper.find('svg #block_echo').simulate('click');
- wrapper.update();
- wrapper.find('.algorithm button.btn-secondary').simulate('click');
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.deep.property('blocks',
- { echo: {
- inputs: {},
- algorithm: '',
- outputs: {},
- parameters: {}
- }}
- );
-
- wrapper.find('svg #block_analysis').simulate('click');
- wrapper.update();
- wrapper.find('.algorithm button.btn-secondary').simulate('click');
- expect(updateFunc.callCount).to.equal(2);
- expect(wrapper.props().data.contents).to.have.deep.property('analyzers',
- { analysis: {
- inputs: {},
- algorithm: '',
- parameters: {}
- }}
- );
-
- expect(wrapper.props().data).to.be.deep.equal({
- 'name': 'user/user/single/1/single_add',
- 'contents': {
- description: '',
- 'analyzers': {
- 'analysis': {
- inputs: {},
- algorithm: '',
- parameters: {}
- }
- },
- 'datasets': {
- 'set': {
- 'set': 'set',
- 'protocol': 'protocol',
- 'database': 'simple/1'
- }
- },
- 'blocks': {
- 'echo': {
- algorithm: '',
- inputs: {},
- outputs: {},
- parameters: {}
- }
- },
- 'globals': {
- 'queue': 'queue',
- 'environment': {
- 'version': '1.2.0',
- 'name': 'Python 2.7'
- },
- }
- }
- });
- });
-
- it(`doesnt change the lockMap after an algorithm or dataset is assigned`, () => {
- const expName = 'user/user/single/1/single_add';
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const tc = testTcs.find(tc => expName.includes(tc.name));
- wrapper = mount(
- <C
- data={getValidObj({name: expName, contents: {}}, tc, [...normalBlocks, ...analyzerBlocks])}
- experiments={[]}
- normalBlocks={normalBlocks}
- analyzerBlocks={analyzerBlocks}
- datasets={datasets}
- toolchain={tc}
- saveFunc={saveFunc}
- environments={envs}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper.props().data).to.have.property('name', expName);
-
- //console.log('finished name change, doing dataset');
-
- wrapper.find('svg #block_set').simulate('click');
- wrapper.find('div.dataset0 select').simulate('change', { target: { value: 'protocol/set (simple/1)'}});
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.deep.property('datasets', {
- 'set': {
- 'set': 'set',
- 'protocol': 'protocol',
- 'database': 'simple/1'
- }
- });
-
- //console.log('finished dataset, doing block');
-
- wrapper.find('svg #block_echo').simulate('click');
- expect(wrapper.find({ name: 'echo', set: 'blocks'}).find('.tcBlockBackground').prop('className')).to.include('highlighted');
- wrapper.find('div.block0 div.algorithm select').at(0).simulate('change', { target: { value: 'user/integers_add/1'}});
- expect(updateFunc.callCount).to.equal(2);
- expect(wrapper.props().data.contents).to.have.deep.property('blocks', {
- 'echo': {
- 'inputs': {
- 'in_data': 'in'
- },
- 'algorithm': 'user/integers_add/1',
- 'outputs': {
- 'out_data': 'out'
- },
- parameters: {}
- }
- });
-
- //console.log('finished block, doing analyzer');
-
- wrapper.find('svg #block_analysis').simulate('click');
- expect(wrapper.find({ name: 'analysis', set: 'analyzers'}).find('.tcBlockBackground').prop('className')).to.include('highlighted');
- wrapper.find('div.block0 div.algorithm select').at(0).simulate('change', { target: { value: 'user/integers_echo_analyzer/1'}});
- expect(updateFunc.callCount).to.equal(3);
- expect(wrapper.props().data.contents).to.have.deep.property('analyzers', {
- 'analysis': {
- 'inputs': {
- 'in_data': 'in'
- },
- 'algorithm': 'user/integers_echo_analyzer/1',
- parameters: {},
- }
- });
-
- expect(wrapper.state().lockMap).to.deep.equal({
- set: false,
- echo: false,
- analysis: false,
- });
- });
- });
-});
diff --git a/conda/js/src/components/experiment/index.js b/conda/js/src/components/experiment/index.js
deleted file mode 100644
index f530318bf5159e3f10fac017232405a281c941c8..0000000000000000000000000000000000000000
--- a/conda/js/src/components/experiment/index.js
+++ /dev/null
@@ -1,8 +0,0 @@
-// @flow
-import ConnectedExperimentEditor, {ExperimentEditor} from './ExperimentEditor.jsx';
-
-export {
- ExperimentEditor,
-};
-
-export default ConnectedExperimentEditor;
diff --git a/conda/js/src/components/library/LibraryEditor.jsx b/conda/js/src/components/library/LibraryEditor.jsx
deleted file mode 100644
index a241194e34dad84106ed4b6e33fa8c60599aaa53..0000000000000000000000000000000000000000
--- a/conda/js/src/components/library/LibraryEditor.jsx
+++ /dev/null
@@ -1,188 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- Button,
- Form,
- FormGroup,
- Label,
- Input,
- InputGroup,
- FormText,
- Collapse,
- Card,
- CardHeader,
- CardBody,
- TabContent, TabPane, Nav, NavItem, NavLink, CardTitle, CardText,
- FormFeedback,
- Alert,
- InputGroupAddon,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import { getValidLibraryObj as getValidObj } from '@helpers/beat';
-import type { BeatObject } from '@helpers/beat';
-import { changeObjFieldName, copyObj } from '@helpers';
-
-import * as Selectors from '@store/selectors.js';
-
-import * as Actions from '@store/actions.js';
-import ValidSchemaBadge from '../ValidSchemaBadge.jsx';
-import CacheInput from '../CacheInput.jsx';
-import DeleteInputBtn from '../DeleteInputBtn.jsx';
-import TypedField from '../TypedField.jsx';
-import TemplateButton from '../EntityTemplateGenerationButton.jsx';
-
-type Props = {
- data: BeatObject,
- libraries: BeatObject[],
- saveFunc: (BeatObject) => any,
- updateFunc: (BeatObject) => any,
-};
-
-export class LibraryEditor extends React.Component<Props> {
- constructor(props: Props) {
- super(props);
- }
-
- setContents = (newContents: any) => {
- this.props.updateFunc({
- ...this.props.data,
- contents: newContents
- });
- }
-
- updateLibraries = (libraries: {}) => {
- this.setContents({...this.props.data.contents, uses: libraries});
- }
-
- render = () => {
- const data = this.props.data;
-
- return (
- <div>
- <div className='d-flex'>
- <Button
- className='mx-auto'
- outline
- color='secondary'
- onClick={() => this.props.saveFunc(data)}
- >
- Save Changes (Changes are <ValidSchemaBadge entity='library' obj={data} />)
- </Button>
- <TemplateButton
- data={data}
- entity={'library'}
- />
- </div>
- <Form onSubmit={(e) => e.preventDefault()}>
- <FormGroup tag='fieldset'>
- <legend>Library Settings</legend>
- <FormGroup>
- <Label for='description'>Short Description</Label>
- <CacheInput
- type='text'
- name='description'
- placeholder='Library description...'
- value={data.contents['description']}
- onChange={e => this.setContents({ ...data.contents, 'description': e.target.value})}
- />
- </FormGroup>
- <FormGroup>
- <Label>Language</Label>
- <Input
- id='libLanguage'
- type='select'
- className='custom-select'
- value={data.contents.language}
- onChange={() => {}}
- >
- <option value='python'>Python</option>
- <option disabled value='cxx'>C++</option>
- <option disabled value='matlab'>Matlab</option>
- <option disabled value='r'>R</option>
- </Input>
- </FormGroup>
- </FormGroup>
- <FormGroup id='usedLibs'>
- <h4>Libraries Used</h4>
- {
- (Object.entries(data.contents.uses): [string, any][]).map(([name, lib], i) => (
- <TypedField
- key={i}
- name={name}
- type={lib}
- types={this.props.libraries.filter(l => l.name !== data.name).map(l => l.name)}
- existingFields={Object.keys(data.contents.uses)}
- nameUpdateFunc={str => {
- const newLibs = changeObjFieldName(data.contents.uses, name, str);
- this.updateLibraries(newLibs);
- }}
- typeUpdateFunc={str => {
- const newLibs = {
- ...data.contents.uses,
- [name]: str
- };
- this.updateLibraries(newLibs);
- }}
- deleteFunc={() => {
- const newLibs = { ...data.contents.uses };
- delete newLibs[name];
- this.updateLibraries(newLibs);
- }}
- />
- ))
- }
- <Button
- outline
- block
- id='newLibrary'
- onClick={e => {
- let newKey = '';
- let v = 0;
- while(true) {
- const tryKey = `lib_${ v }`;
- if(Object.keys(data.contents.uses).includes(tryKey)){
- v++;
- continue;
- }
- newKey = tryKey;
- break;
- }
-
- this.updateLibraries({
- ...data.contents.uses,
- [newKey]: ''
- });
- }}
- >
- Use Another Library
- </Button>
- </FormGroup>
- </Form>
- </div>
- );
- }
-}
-
-const mapStateToProps = (state, ownProps) => {
- const libs = Selectors.libraryGet(state);
- const obj = {
- libraries: libs,
- data: libs[ownProps.index] || getValidObj()
- };
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- console.log(`dispatching for ${ obj.name }`);
- dispatch(Actions[`libraryUpdate`](obj.name, obj));
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(LibraryEditor);
diff --git a/conda/js/src/components/library/LibraryEditor.spec.jsx b/conda/js/src/components/library/LibraryEditor.spec.jsx
deleted file mode 100644
index aa5e29ea081c7bbb2f27eb54c3d9af48c8e6c716..0000000000000000000000000000000000000000
--- a/conda/js/src/components/library/LibraryEditor.spec.jsx
+++ /dev/null
@@ -1,124 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import { LibraryEditor as C } from '.';
-
-import testLibs from '@test/test_libs.json';
-
-describe('<LibraryEditor />', () => {
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount){
- wrapper.unmount();
- }
- });
-
- describe('accepts', () => {
- const libs = [
- {
- name: 'test/lib/1',
- contents: {
- language: 'python',
- uses: [],
- }
- }
- ].concat(testLibs);
-
- libs.forEach(function(lib){
- const saveFunc = () => {};
- const updateFunc = () => {};
- it(`${ lib.name }`, () => {
- wrapper = mount(
- <C
- data={lib}
- libraries={libs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'libraries', 'saveFunc', 'updateFunc']
- ).deep.equal(
- [lib, libs, saveFunc, updateFunc]
- );
- });
- });
- });
-
- describe('creates', () => {
- it('user/anotherlib/1', () => {
- const libName = 'user/anotherlib/1';
- const saveFunc = sinon.spy();
- const updateFunc = sinon.spy();
- wrapper = mount(
- <C
- data={{name: libName, contents: { description: '', uses: {}, language: 'python' }}}
- libraries={testLibs.filter(l => l.name !== libName)}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'libraries', 'saveFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', libName);
-
- expect(wrapper.props().data.contents).to.deep.equal({
- 'description': '',
- 'uses': {},
- 'language': 'python'
- });
- });
-
- it('user/thelib/1', () => {
- const libName = 'user/thelib/1';
- const saveFunc = sinon.spy();
- const data = {name: libName, contents: { description: '', uses: {}, language: 'python' }};
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- wrapper = mount(
- <C
- data={data}
- libraries={testLibs.filter(l => l.name !== libName)}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- let props = wrapper.props();
- expect(props.data).to.have.property('name', libName);
-
- wrapper.find('button#newLibrary').simulate('click');
- expect(updateFunc.callCount).to.equal(1);
-
- wrapper.find('#usedLibs CacheInput[type="text"]').prop('onChange')({ target: { value: 'lib'}});
- expect(updateFunc.callCount).to.equal(2);
-
- wrapper.find('#usedLibs select').simulate('change', { target: { value: 'user/anotherlib/1'}});
- expect(updateFunc.callCount).to.equal(3);
-
- props = wrapper.props();
- expect(props.data.contents).to.deep.equal({
- 'description': '',
- 'uses': {
- lib: 'user/anotherlib/1'
- },
- 'language': 'python'
- });
- });
- });
-});
diff --git a/conda/js/src/components/library/index.js b/conda/js/src/components/library/index.js
deleted file mode 100644
index e331ab4e8558a1ea3b0656f1ae10679944653300..0000000000000000000000000000000000000000
--- a/conda/js/src/components/library/index.js
+++ /dev/null
@@ -1,8 +0,0 @@
-// @flow
-import ConnectedLibraryEditor, {LibraryEditor} from './LibraryEditor.jsx';
-
-export {
- LibraryEditor,
-};
-
-export default ConnectedLibraryEditor;
diff --git a/conda/js/src/components/plotter/PlotterEditor.jsx b/conda/js/src/components/plotter/PlotterEditor.jsx
deleted file mode 100644
index 9095ced7458b68202d338e36c413b1979bfb3ce5..0000000000000000000000000000000000000000
--- a/conda/js/src/components/plotter/PlotterEditor.jsx
+++ /dev/null
@@ -1,277 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Row,
- Col,
- Button,
- Form, FormGroup,
- Label, Input,
- Card, CardHeader, CardBody,
- TabContent, TabPane, Nav, NavItem, NavLink,
- Alert,
- UncontrolledDropdown, DropdownToggle, DropdownMenu,
- InputGroup, InputGroupAddon,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import cn from 'classnames';
-
-import { changeObjFieldName, generateNewKey, copyObj } from '@helpers';
-import { BUILTIN_TYPES, ANALYZER_RESULT_TYPES, getValidPlotterObj as getValidObj } from '@helpers/beat';
-import type { BeatObject } from '@helpers/beat';
-
-import * as Selectors from '@store/selectors.js';
-
-import * as Actions from '@store/actions.js';
-import CacheInput from '../CacheInput.jsx';
-import ValidSchemaBadge from '../ValidSchemaBadge.jsx';
-import DeleteInputBtn from '../DeleteInputBtn.jsx';
-import TypedField from '../TypedField.jsx';
-import TemplateButton from '../EntityTemplateGenerationButton.jsx';
-import InfoTooltip from '../InfoTooltip.jsx';
-import ParameterCreate from '../ParameterCreate.jsx';
-
-type Props = {
- data: BeatObject,
- libraries: BeatObject[],
- plotDfNames: string[],
- saveFunc: (BeatObject) => any,
- updateFunc: (BeatObject) => any,
-};
-
-type State = {
- choiceCache: string,
-};
-
-export class PlotterEditor extends React.Component<Props, State> {
- constructor(props: Props) {
- //console.log(`Creating AlgDetail`);
- super(props);
- }
-
- state = {
- choiceCache: '',
- }
-
- setContents = (newContents: any) => {
- this.props.updateFunc({
- ...this.props.data,
- contents: {
- ...this.props.data.contents,
- ...newContents,
- }
- });
- }
-
- updateDescription = (desc: string) => {
- this.setContents({ description: desc });
- }
-
- updateDataformat = (df: string) => {
- this.setContents({ dataformat: df });
- }
-
- // 4 different functions:
- // creates a parameter (provide name & value)
- // updates a parameter (provide name & value)
- // renames a parameter (provide name & value & the old name)
- // deletes a parameter (provide null as name, value is optional, the name)
- updateParameter = (name: null | string, value: any, oldName: ?string) => {
- const params = copyObj(this.props.data.contents.parameters);
- if(oldName)
- delete params[oldName];
- if(name !== null)
- params[name] = value;
- this.setContents({ parameters: params });
- }
-
- // helper to change a value in the "contents" subobject of a plotter
- // (this is where the vast majority of change happens)
- changeContentsVal = (field: string, val: any) => {
- const newCache = {
- ...this.props.data,
- contents: {
- ...this.props.data.contents,
- [field]: val
- }
- };
-
- this.props.updateFunc(newCache);
- }
-
-
- renderLibraries = () => (
- <TabPane tabId='2'>
- <Row>
- <Col sm='12'>
- {
- // loop through all the used libs
- (Object.entries(this.props.data.contents.uses): [string, any][])
- .map(([name, lib], i, lEntries) => (
- <TypedField
- key={i}
- name={name}
- type={lib}
- types={this.props.libraries.map(l => l.name)}
- existingFields={lEntries.map(([n, v]) => n)}
- nameUpdateFunc={str => {
- // update the alias
- this.changeContentsVal('uses',
- changeObjFieldName(
- this.props.data.contents.uses,
- name,
- str
- )
- );
- }}
- typeUpdateFunc={str => {
- // update the chosen library for the alias
- const libs = {
- ...this.props.data.contents.uses,
- [name]: str
- };
- this.changeContentsVal('uses', libs);
- }}
- deleteFunc={() => {
- const libs = { ...this.props.data.contents.uses };
- delete libs[name];
- this.changeContentsVal('uses', libs);
- }}
- />
- ))
- }
- </Col>
- </Row>
- <Button outline block
- id='newLibraryBtn'
- onClick={() => {
- const newKey = generateNewKey('library', Object.keys(this.props.data.contents.uses));
- this.changeContentsVal('uses',
- {
- ...this.props.data.contents.uses,
- [newKey]: ''
- }
- );
- }}
- >
- New Library
- </Button>
- </TabPane>
- );
-
-
- render = () => {
- return (
- <div>
- <div className='d-flex'>
- <Button
- className='mx-auto'
- outline
- color='secondary'
- onClick={() => this.props.saveFunc(this.props.data)}
- >
- Save Changes (Changes are <ValidSchemaBadge entity='plotter' obj={this.props.data} />)
- </Button>
- <TemplateButton
- data={this.props.data}
- entity={'plotter'}
- />
- </div>
- <Form>
- <FormGroup tag='fieldset'>
- <FormGroup>
- <Label>Short Description</Label>
- <Input
- type='text'
- id='plDesc'
- placeholder='Plotter description...'
- value={this.props.data.contents.description}
- onChange={(e) => this.updateDescription(e.target.value)}
- />
- </FormGroup>
- <FormGroup>
- <Label>Input Dataformat</Label>
- <Input
- id='plDf'
- type='select'
- className='custom-select'
- value={this.props.data.contents.dataformat}
- onChange={e => this.updateDataformat(e.target.value)}
- >
- {
- this.props.plotDfNames.map((df, i) =>
- <option key={i} value={df}>{ df }</option>
- )
- }
- </Input>
- </FormGroup>
- <FormGroup id='usedLibs'>
- <h5>Libraries</h5>
- { this.renderLibraries() }
- </FormGroup>
- <FormGroup id='paramsForm'>
- <h5>Parameters</h5>
- {
- (Object.entries(this.props.data.contents.parameters): [string, any][]).map(([name, param], i, params) => (
- <Row key={i} className='mb-2'>
- <Col sm='12'>
- <ParameterCreate
- name={name}
- param={param}
- params={params}
- updateParameter={this.updateParameter}
- />
- </Col>
- </Row>
- ))
- }
- <Button outline block
- id='newParameterBtn'
- onClick={() => {
- const newKey = generateNewKey('parameter', Object.keys(this.props.data.contents.parameters || {}));
- this.updateParameter(
- newKey,
- {
- type: '',
- default: '',
- description: '',
- }
- );
- }}
- >
- New Parameter
- </Button>
- </FormGroup>
- </FormGroup>
- </Form>
- </div>
- );
- }
-}
-
-const mapStateToProps = (state, ownProps) => {
- const plotters = Selectors.plotterGet(state);
- const obj = {
- libraries: Selectors.libraryGet(state),
- plotDfNames: Selectors.dataformatGet(state).map(df => df.name).filter(df => df.startsWith('plot/')),
- data: plotters[ownProps.index] || getValidObj(),
- };
-
- if(obj.data.contents.dataformat === "")
- {
- obj.plotDfNames.unshift("-- select an option --")
- };
-
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- console.log(`dispatching for ${ obj.name }`);
- dispatch(Actions[`plotterUpdate`](obj.name, obj));
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(PlotterEditor);
diff --git a/conda/js/src/components/plotter/PlotterEditor.spec.jsx b/conda/js/src/components/plotter/PlotterEditor.spec.jsx
deleted file mode 100644
index 5aa3bd3b9649c8cdeb218805d826655059ede4b6..0000000000000000000000000000000000000000
--- a/conda/js/src/components/plotter/PlotterEditor.spec.jsx
+++ /dev/null
@@ -1,236 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import { PlotterEditor as C } from '.';
-import { getValidPlotterObj as getValidObj } from '@helpers/beat';
-
-import testPlotters from '@test/test_plotters.json';
-import testDfs from '@test/test_dfs.json';
-import testLibs from '@test/test_libs.json';
-
-const libs = [];
-
-describe('<PlotterEditor />', () => {
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- describe('accepts', () => {
- const plots = [
- {
- name: 'test/myplot/1',
- contents: {
- description: 'A basic plotter as a sanity test for the PlotterEditor',
- language: 'python',
- parameters: {
- 'parameter_1': {
- type: 'string',
- default: 'default',
- description: 'description',
- }
- },
- dataformat: "plot/bar/1",
- uses: {
- 'library': 'plot/baselib/1',
- }
- }
- }
- ].concat(testPlotters.map(a => getValidObj(a)));
-
- plots.forEach(function(plot){
- const saveFunc = () => {};
- const updateFunc = () => {};
- const dfs = testDfs.filter(d => d.name.startsWith('plot')).map(testDfs => testDfs.name);
- it(`${ plot.name }`, () => {
- wrapper = mount(
- <C
- data={getValidObj(plot)}
- plotters={plots}
- dataformats={plot.contents.dataformat}
- plotDfNames={dfs}
- libraries={libs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
- expect(wrapper).to.have.props(
- ['data', 'plotters', 'dataformats', 'libraries', 'saveFunc', 'updateFunc']
- )
- });
- });
- });
-
- describe('creates', () => {
- it('test/createplot/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const plotName = 'test/createplot/1';
- const dfs = testDfs.filter(d => d.name.startsWith('plot')).map(testDfs => testDfs.name);
- wrapper = mount(
- <C
- data={getValidObj({name: plotName, contents: {}})}
- plotters={[]}
- dataformats={testDfs}
- plotDfNames={dfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'plotters', 'dataformats', 'plotDfNames', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', plotName);
-
- expect(wrapper.props().data.contents).to.have.property('dataformat', '');
- expect(wrapper.props().data.contents).to.have.property('dataformat').with.lengthOf(0);
- expect(wrapper.props().data.contents).to.have.property('language').with.lengthOf(6);
- expect(wrapper.props().data.contents).to.have.property('language', 'python');
- wrapper.find('#plDf select').simulate('change', { target: { value: 'user/anotherdataformat/1'}});
- expect(updateFunc.callCount).to.equal(1);
-
- expect(wrapper.props().data.contents).to.have.property('dataformat', 'user/anotherdataformat/1');
- expect(wrapper.props().data.contents).to.have.property('language', 'python');
-
- expect(wrapper.props().data.contents).to.have.property('description').with.lengthOf(0);
- expect(wrapper.props().data.contents).to.have.property('language').with.lengthOf(6);
- expect(wrapper.props().data.contents).to.have.property('dataformat').with.lengthOf(24);
- expect(wrapper.props().data.contents).to.have.property('parameters').that.deep.equals({});
- expect(wrapper.props().data.contents).to.have.property('uses').that.deep.equals({});
- expect(wrapper.props().data.contents).to.deep.equal({
- 'description': '',
- 'uses': {},
- 'parameters': {},
- 'language': 'python',
- 'dataformat': 'user/anotherdataformat/1'
- });
-
- });
-
- it('test/plot_add_lib/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const plotName = 'test/plot_other/1';
- const dfs = testDfs.filter(d => d.name.startsWith('plot')).map(testDfs => testDfs.name);
- wrapper = mount(
- <C
- data={getValidObj({name: plotName, contents: {}})}
- plotters={[]}
- dataformats={testDfs}
- plotDfNames={dfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'plotters', 'dataformats', 'plotDfNames', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', plotName);
-
- expect(wrapper.props().data.contents).to.have.property('dataformat', '');
- expect(wrapper.props().data.contents).to.have.property('dataformat').with.lengthOf(0);
- expect(wrapper.props().data.contents).to.have.property('language').with.lengthOf(6);
- expect(wrapper.props().data.contents).to.have.property('language', 'python');
- expect(wrapper.props().data.contents).to.have.property('parameters').that.deep.equals({});
- expect(wrapper.props().data.contents).to.have.property('uses').that.deep.equals({});
-
- wrapper.find('button#newLibraryBtn').simulate('click');
- wrapper.find('#usedLibs CacheInput[type="text"]').prop('onChange')({ target: { value: 'lib'}});
- expect(updateFunc.callCount).to.equal(2);
-
- wrapper.find('#usedLibs select').simulate('change', { target: { value: 'user/anotherlib/1'}});
- expect(updateFunc.callCount).to.equal(3);
-
- expect(wrapper.props().data.contents).to.deep.equal({
- 'description': '',
- 'uses': {
- lib: 'user/anotherlib/1'
- },
- 'language': 'python',
- 'parameters': {},
- 'dataformat': ''
- });
- });
-
- it('test/plot_add_param/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const plotName = 'test/plot_param/1';
- const dfs = testDfs.filter(d => d.name.startsWith('plot')).map(testDfs => testDfs.name);
- wrapper = mount(
- <C
- data={getValidObj({name: plotName, contents: {}})}
- plotters={[]}
- dataformats={testDfs}
- plotDfNames={dfs}
- libraries={testLibs}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'plotters', 'dataformats', 'plotDfNames', 'libraries', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', plotName);
-
- expect(wrapper.props().data.contents).to.have.property('dataformat', '');
- expect(wrapper.props().data.contents).to.have.property('dataformat').with.lengthOf(0);
- expect(wrapper.props().data.contents).to.have.property('language').with.lengthOf(6);
- expect(wrapper.props().data.contents).to.have.property('language', 'python');
- expect(wrapper.props().data.contents).to.have.property('parameters').that.deep.equals({});
- expect(wrapper.props().data.contents).to.have.property('uses').that.deep.equals({});
- wrapper.find('button#newParameterBtn').simulate('click');
- expect(updateFunc.callCount).to.equal(1);
-
- wrapper.find('CacheInput[placeholder="Parameter name..."]').prop('onChange')( { target: { value: 'offset' }});
- expect(updateFunc.callCount).to.equal(2);
- wrapper.find('#paramsForm select').prop('onChange')( { target: { value: 'int32' }});
- expect(updateFunc.callCount).to.equal(3);
- wrapper.find('input[placeholder="Default"]').simulate('change', { target: { value: '1' }});
- expect(updateFunc.callCount).to.equal(4);
-
- expect(wrapper.props().data.contents.parameters).to.have.deep.property('offset', {
- 'default': '1',
- 'type': 'int32',
- 'description': '',
- });
-
- expect(wrapper.props().data.contents).to.deep.equal({
- 'description': '',
- 'uses': {},
- 'language': 'python',
- 'parameters': {
- 'offset': {
- 'default': '1',
- 'type': 'int32',
- description: '',
- }
- },
- 'dataformat': ''
- });
- });
- });
-});
diff --git a/conda/js/src/components/plotter/index.js b/conda/js/src/components/plotter/index.js
deleted file mode 100644
index c3bf287afd9e56c9f6f38ade911beb8c725b746b..0000000000000000000000000000000000000000
--- a/conda/js/src/components/plotter/index.js
+++ /dev/null
@@ -1,8 +0,0 @@
-// @flow
-import ConnectedPlotterEditor, {PlotterEditor} from './PlotterEditor.jsx';
-
-export {
- PlotterEditor,
-};
-
-export default ConnectedPlotterEditor;
diff --git a/conda/js/src/components/plotterparameter/PlotterParameterEditor.jsx b/conda/js/src/components/plotterparameter/PlotterParameterEditor.jsx
deleted file mode 100644
index 9c90b2ffa4a41704514325ccd068cd3273362101..0000000000000000000000000000000000000000
--- a/conda/js/src/components/plotterparameter/PlotterParameterEditor.jsx
+++ /dev/null
@@ -1,193 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Row,
- Col,
- Button,
- Form, FormGroup,
- Label, Input,
- Card, CardHeader, CardBody,
- TabContent, TabPane, Nav, NavItem, NavLink,
- Alert,
- UncontrolledDropdown, DropdownToggle, DropdownMenu,
- InputGroup, InputGroupAddon,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-
-import cn from 'classnames';
-
-import { changeObjFieldName, generateNewKey, copyObj } from '@helpers';
-import { BUILTIN_TYPES, ANALYZER_RESULT_TYPES, getValidPlotterparameterObj as getValidObj, expGetDefaultParameterValue as getDefaultParameterValue } from '@helpers/beat';
-import type { BeatObject } from '@helpers/beat';
-
-import * as Selectors from '@store/selectors.js';
-
-import * as Actions from '@store/actions.js';
-import CacheInput from '../CacheInput.jsx';
-import ValidSchemaBadge from '../ValidSchemaBadge.jsx';
-import DeleteInputBtn from '../DeleteInputBtn.jsx';
-import TypedField from '../TypedField.jsx';
-import TemplateButton from '../EntityTemplateGenerationButton.jsx';
-import InfoTooltip from '../InfoTooltip.jsx';
-import ParameterConsume from '../ParameterConsume.jsx';
-
-type Props = {
- plotters: BeatObject[],
- data: BeatObject,
- saveFunc: (BeatObject) => any,
- updateFunc: (BeatObject) => any,
-};
-
-export class PlotterParameterEditor extends React.Component<Props> {
- constructor(props: Props) {
- //console.log(`Creating AlgDetail`);
- super(props);
- }
-
- setContents = (newContents: any) => {
- this.props.updateFunc({
- ...this.props.data,
- contents: {
- ...this.props.data.contents,
- ...newContents,
- }
- });
- }
-
- updateDescription = (desc: string) => {
- this.setContents({ description: desc });
- }
-
- getPlotterName = (): string => {
- return this.props.data.contents.plotter;
- }
-
- getPlotter = (name: ?string) => {
- const n = name || this.getPlotterName();
- const pl = this.props.plotters.find(pl => pl.name === n);
- return pl || {};
- }
-
- updatePlotter = (plName: string) => {
- const pl = this.getPlotter(plName);
- const oldPlotter = this.getPlotterName();
- if(oldPlotter === pl.name)
- return;
-
- this.setContents({
- plotter: pl.name,
- data: Object.entries(pl.contents.parameters)
- .map(([p, info]) => ({ [p]: getDefaultParameterValue(info) }))
- .reduce((o, p) => ({ ...o, ...p }), {})
- });
- }
-
- updateParameter = (pName: string, v: number | string | boolean) => {
- this.setContents({
- data: {
- ...this.props.data.contents.data,
- [pName]: v
- }
- });
- }
-
- render = () => {
- const pn = this.getPlotterName();
- const pl = this.getPlotter(pn);
-
- return (
- <div>
- <div className='d-flex'>
- <Button
- className='mx-auto'
- outline
- color='secondary'
- onClick={() => this.props.saveFunc(this.props.data)}
- >
- Save Changes (Changes are <ValidSchemaBadge entity='plotterparameter' obj={this.props.data} />)
- </Button>
- {/*
- <TemplateButton
- data={this.props.data}
- entity={'plotter'}
- />
- */}
- </div>
- <Form>
- <FormGroup tag='fieldset'>
- <FormGroup>
- <Label>Short Description</Label>
- <Input
- type='text'
- id='ppDesc'
- placeholder='Parameter description...'
- value={this.props.data.contents.description}
- onChange={(e) => this.updateDescription(e.target.value)}
- />
- </FormGroup>
- <FormGroup>
- <Label>Plotter</Label>
- <Input
- type='select'
- className='custom-select'
- id='ppPl'
- placeholder='Plotter...'
- value={pn}
- onChange={e => this.updatePlotter(e.target.value)}
- >
- {
- this.props.plotters.map((pl, i) =>
- <option key={i} value={pl.name}>{ pl.name }</option>
- )
- }
- </Input>
- </FormGroup>
- <h5>Parameters</h5>
- {
- pl.contents &&
- Object.entries(pl.contents.parameters).map(([pName, o], i) =>
- <FormGroup row key={i}>
- <Label sm={4}>{ pName }</Label>
- <Col>
- <ParameterConsume
- parameter={o}
- updateFunc={(v: any) => this.updateParameter(pName, v)}
- currVal={this.props.data.contents.data[pName]}
- />
- </Col>
- </FormGroup>
- )
- }
- </FormGroup>
- </Form>
- </div>
- );
- }
-}
-
-const mapStateToProps = (state, ownProps) => {
- const params = Selectors.plotterparameterGet(state);
- const obj = {
- plotters: Selectors.plotterGet(state),
- data: params[ownProps.index] || getValidObj(),
- };
-
- if(!obj.data.contents.hasOwnProperty('plotter') ||
- obj.data.contents.plotters === "")
- {
- obj.plotters.unshift({name: "-- select an option --"})
- };
-
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- console.log(`dispatching for ${ obj.name }`);
- dispatch(Actions[`plotterparameterUpdate`](obj.name, obj));
- },
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(PlotterParameterEditor);
diff --git a/conda/js/src/components/plotterparameter/PlotterParameterEditor.spec.jsx b/conda/js/src/components/plotterparameter/PlotterParameterEditor.spec.jsx
deleted file mode 100644
index 1efd25522acc86d43fc4d14c6ae00a496e8aa098..0000000000000000000000000000000000000000
--- a/conda/js/src/components/plotterparameter/PlotterParameterEditor.spec.jsx
+++ /dev/null
@@ -1,126 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import { PlotterParameterEditor as C } from '.';
-import { getValidPlotterparameterObj as getValidObj } from '@helpers/beat';
-
-import testPlotterParameters from '@test/test_plotterparameters.json';
-import testPlotters from '@test/test_plotters.json';
-
-const libs = [];
-
-describe('<PlotterParameterEditor />', () => {
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- describe('accepts', () => {
- const plotparams = [
- {
- name: 'test/myplotterparameter/1',
- contents: {
- description: 'A basic plotterparameter as a sanity test for the PlotterParameterEditor',
- data: {
- legend_loc: 'string'
- },
- plotter: "plot/bar/1"
- }
- }
- ].concat(testPlotterParameters.map(a => getValidObj(a)));
-
- plotparams.forEach(function(plotparam){
- const saveFunc = () => {};
- const updateFunc = () => {};
- const plotters = testPlotters.filter(d => d.name.startsWith('plot')).map(testPlotters => testPlotters.name);
- it(`${ plotparam.name }`, () => {
- wrapper = mount(
- <C
- data={getValidObj(plotparam)}
- plotterparameters={plotparams}
- plotters={plotters}
- plotterNames={plotters}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
- expect(wrapper).to.have.props(
- ['data', 'plotterparameters', 'plotters', 'saveFunc', 'updateFunc']
- )
- });
- });
- });
-
- describe('creates', () => {
- it('test/createplotparam/1', () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const plotparamName = 'test/createplotparam/1';
- const plotters = testPlotters.filter(d => d.name.startsWith('plot')).map(testPlotters => testPlotters);
- wrapper = mount(
- <C
- data={getValidObj({name: plotparamName, contents: {}})}
- plotterparameters={[]}
- plotters={plotters}
- plotterNames={plotters}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'plotterparameters', 'plotters', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', plotparamName);
-
- expect(wrapper.props().data.contents).to.have.property('description');
- expect(wrapper.props().data.contents).to.have.property('description').with.lengthOf(0);
- wrapper.find('#ppPl select').simulate('change', { target: { value: 'user/anotherploter/1'}});
- expect(updateFunc.callCount).to.equal(0);
- wrapper.find('#ppPl select').simulate('change', { target: { value: 'plot/bar/1'}});
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents).to.have.property('plotter', 'plot/bar/1');
-
- expect(wrapper.props().data.contents).to.have.property('description').with.lengthOf(0);
- expect(wrapper.props().data.contents).to.have.property('plotter').with.lengthOf(10);
- expect(wrapper.props().data.contents).to.have.property('data');
- expect(wrapper.props().data.contents).to.deep.equal({
- 'description': '',
- 'plotter': 'plot/bar/1',
- 'data': {
- 'axis-fontsize': 10,
- 'bar-alpha': 0.75,
- 'bar-norm': true,
- 'bar_attributes': '',
- 'content_type': 'image/png',
- 'dpi': 60,
- 'grid': false,
- 'height': 300,
- 'legend': '',
- 'legend-bbox-to-anchor': 1,
- 'legend-fontsize': 12,
- 'legend-loc': 'best',
- 'title': 'Bar plot',
- 'title-fontsize': 10,
- 'width': 400,
- 'xaxis_multiplier': 1,
- 'xlabel': '',
- 'yaxis_log': false,
- 'yaxis_multiplier': 1,
- 'ylabel': ''
- }
- });
-
- });
- });
-});
diff --git a/conda/js/src/components/plotterparameter/index.js b/conda/js/src/components/plotterparameter/index.js
deleted file mode 100644
index 43b74bd5b0fe019e80666462f790bbed8e247b55..0000000000000000000000000000000000000000
--- a/conda/js/src/components/plotterparameter/index.js
+++ /dev/null
@@ -1,8 +0,0 @@
-// @flow
-import ConnectedPlotterParameterEditor, {PlotterParameterEditor} from './PlotterParameterEditor.jsx';
-
-export {
- PlotterParameterEditor,
-};
-
-export default ConnectedPlotterParameterEditor;
diff --git a/conda/js/src/components/toolchain/GraphicalEditor.css b/conda/js/src/components/toolchain/GraphicalEditor.css
deleted file mode 100644
index 169634b8db9f43cad1e996eb9d58beaaa58d7a05..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/GraphicalEditor.css
+++ /dev/null
@@ -1,72 +0,0 @@
-svg {
- background-color: white;
- user-select: none;
-}
-
-line {
- stroke-linecap: round;
-}
-
-.editorWrapper {
- height: 500px;
- width: 100%;
- background-color: grey;
- z-index: 1;
-}
-
-.editorWrapper.maximized {
- position: fixed;
- left: 5%;
- top: 5%;
- width: 90%;
- height: 90%;
- background-color: grey;
- border: solid 1px grey;
- border-radius: 2px;
- box-shadow: 0 0 5px grey;
-}
-
-.editorWrapper2 {
- height: 100%;
- width: 100%;
- background-color: white;
- overflow: scroll;
-}
-
-.tcBlock:hover > .tcBlockWhiteFill {
- filter: brightness(95%);
-}
-
-.tcBlock > .highlighted {
- stroke-dasharray: 10, 10;
-}
-
-.experimentEditor .tcBlock > .highlighted {
- stroke-width: 3px;
-}
-
-.editorMenu {
- background: rgba(255, 255, 255, 0.5);
- position: absolute;
- margin: auto;
- margin-top: 0.5em;
- right: 2em;
-}
-
-.editorWrapper.maximized > .editorMenu {
- right: 1em;
-}
-
-text {
- user-select: none;
- font-family: monospace;
-}
-
-.tcBlockTitle {
- font-weight: bold;
-}
-
-.tcConnection > .error {
- stroke: crimson;
- stroke-dasharray: 10, 10;
-}
diff --git a/conda/js/src/components/toolchain/GraphicalEditor.jsx b/conda/js/src/components/toolchain/GraphicalEditor.jsx
deleted file mode 100644
index a78ced3420f98d62ec961e45ce89239a14fc86e9..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/GraphicalEditor.jsx
+++ /dev/null
@@ -1,1134 +0,0 @@
-// @flow
-import './GraphicalEditor.css';
-import * as React from 'react';
-import * as d3 from 'd3';
-import {
- Button,
- ButtonGroup,
-} from 'reactstrap';
-import cn from 'classnames';
-import Block from './ToolchainBlock.jsx';
-import Connection, { connectionToId } from './ToolchainConnection.jsx';
-import HelpModal from './GraphicalEditorHelpModal.jsx';
-import { ContextMenuTrigger } from 'react-contextmenu';
-import { changeObjFieldName, generateNewKey } from '@helpers';
-
-import type {
- BlockType,
- NormalBlock,
- AnalyzerBlock,
- DatasetBlock,
- BlockSet,
- BlockCoords,
- ConnectionType,
- Group,
- LocationMapEntry,
- LocationMap ,
-} from '@helpers/toolchainTypes';
-
-type Props = {
- // the representation data of the toolchain (block locations & channel colors)
- repData: {
- blocks: {
- [string]: {
- col: number,
- row: number,
- }
- },
- channel_colors: {
- [string]: string
- },
- },
- // the blocks in the toolchain
- blocks: NormalBlock[],
- // the datasets in the toolchain
- datasets: DatasetBlock[],
- // the analyzers in the toolchain
- analyzers: AnalyzerBlock[],
- // the connections in the toolchain
- connections: ConnectionType[],
- // block groups (not a feature in beat web)
- groups: Group[],
- handleBlockClick?: (blockName: string, set: BlockSet) => any,
- handleBackgroundClick?: (e: any) => any,
- // updates a block location to col #x & row #y
- updateBlockLocations?: (bLocs: {blockName: string, x: number, y: number}[]) => any,
- createConnection?: (from: string, to: string, channel: string) => any,
- // extra svg to be drawn after the blocks & connections
- svgChildren?: React.Node,
- // extra children (e.g. context menus) that arent svg
- divChildren?: React.Node,
- // should the d3 behaviours be enabled?
- interactable?: boolean,
- // map of block names to strings of text to display on the bottom of a block
- // used for showing the selected dataset/algorithm in an exp
- experimentData?: { [string]: string },
- // block names mapped to an array of error strings
- errorBlocks?: { [string]: string[] },
- // blocks to highlight strongly
- focusBlocks?: string[],
- toolbarContent?: React.Node,
-};
-
-type State = {
- // the scale transformation for the svg
- zoomLevel: number,
- // represents the most recent click at a specific point on the svg's grid background
- svgActionLocation: {
- x: number,
- y: number,
- },
- selectedBlocks: BlockType[],
- maximized: boolean,
- helpActive: boolean,
- rightClickBlock: ?string,
- rightClickConnection: ?ConnectionType,
-};
-
-// note: all measurements are in px by default for svg
-// how tall a line of text is in a block
-export const blockTextHeight = 20;
-export const svgDimensionLength = 6000;
-export const svgWidth = svgDimensionLength;
-export const svgHeight = svgDimensionLength;
-export const startingZoomLevel = svgDimensionLength;
-export const minZoomLevel = 5000;
-export const svgWidthHalf = svgWidth / 2;
-export const svgHeightHalf = svgHeight / 2;
-export const blockWidth = 200;
-// spacing between grid rows/cols
-export const gridDistance = 20;
-// how much the scaling changes at once
-export const zoomAdjustmentAmount = 100;
-// convert coords in the SVG element to coords to save in data
-export const convertWorldToDataCoords = (x: number, y: number) => {
- return [x - svgWidthHalf, y - svgHeightHalf];
-};
-// convert coords in the data to the actual SVG locations
-export const convertDataToWorldCoords = (x: number, y: number) => {
- return [x + svgWidthHalf, y + svgHeightHalf];
-};
-export const clampCoordsToGrid = (x: number, y: number): [number, number] => {
- const nx = Math.round(x / gridDistance) * gridDistance;
- const ny = Math.round(y / gridDistance) * gridDistance;
- return [nx, ny];
-};
-
-export default class GraphicalEditor extends React.PureComponent<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- state = {
- zoomLevel: startingZoomLevel,
- svgActionLocation: {
- x: -1,
- y: -1,
- },
- selectedBlocks: [],
- maximized: false,
- helpActive: false,
- rightClickBlock: undefined,
- rightClickConnection: undefined,
- };
-
- // initializes d3 behaviours (most SVG interactions)
- componentDidMount = () => {
- this.initD3Behaviours();
- this.fitToToolchain(this.getLocationMap());
- //this.scrollToMiddle();
- }
-
- // initalize all the d3 behaviours again if the tc changed,
- // so new blocks have the d3 stuff and old blocks are removed
- // (they overwrite older ones)
- componentDidUpdate = (prevProps: Props, prevState: State, snapshot: any) => {
- if(prevProps !== this.props){
- this.initD3Behaviours();
- }
- }
-
- initD3Behaviours = () => {
- if(this.props.interactable){
- this.initD3Drag();
- this.initD3Connections();
- this.initD3AreaSelect();
- this.initD3MouseMovement();
- }
- }
-
- // used for the scrollElement ref
- scrollElement = null;
- // used for the svgContextMenu ref
- svgContextMenu = null;
- // used for the blockContextMenu ref
- blockContextMenu = null;
- handleBlockContextMenu = (e: any, name: string, set: string) => {
- //console.log(`${ name } : ${ set }`);
- if(this.blockContextMenu){
- this.setState({ rightClickBlock: name });
- e.persist();
- e.preventDefault();
- e.stopPropagation();
- setTimeout(() => {
- if(this.blockContextMenu)
- this.blockContextMenu.handleContextClick(e);
- }, 0);
- }
- }
-
- // used for the connectionContextMenu ref
- connectionContextMenu = null;
- handleConnectionContextMenu = (e: any, connection: ConnectionType) => {
- //console.log(`${ name } : ${ set }`);
- if(this.connectionContextMenu){
- this.setState({ rightClickConnection: connection });
- e.persist();
- e.preventDefault();
- e.stopPropagation();
- setTimeout(() => {
- if(this.connectionContextMenu)
- this.connectionContextMenu.handleContextClick(e);
- }, 0);
- }
- }
-
- scrollTo = (x: number, y: number) => {
- setTimeout(() => {
- if(this.scrollElement){
- this.scrollElement.scrollLeft = x;
- this.scrollElement.scrollTop = y;
- }
- }, 50);
- };
-
- // scrolls to the middle of the page
- scrollToMiddle = () => {
- this.scrollTo(svgWidthHalf - 300, svgHeightHalf - 300);
- };
-
- // adjusts the zoomlevel
- setZoomLevel = (zoomLevel: number) => zoomLevel >= minZoomLevel && this.setState({zoomLevel: zoomLevel});
- // zoom out
- zoomOut = () => this.setZoomLevel(this.state.zoomLevel + zoomAdjustmentAmount);
- // zoom in
- zoomIn = () => this.setZoomLevel(this.state.zoomLevel - zoomAdjustmentAmount);
- // toggle maximized
- toggleMaximized = () => this.setState({ maximized: !this.state.maximized });
- // toggles the help modal
- toggleHelp = () => this.setState({ helpActive: !this.state.helpActive });
-
- // generates the string representing the viewbox of the svg. The first two numbers represent the offset, the last two the scaling.
- getSvgViewBox = () => `0 0 ${ this.state.zoomLevel } ${ this.state.zoomLevel }`;
-
- findBlock = (name: string): BlockType => {
- const b = this.props.blocks.find(b => b.name === name) ||
- this.props.datasets.find(b => b.name === name) ||
- this.props.analyzers.find(b => b.name === name)
- ;
- if(!b)
- throw new Error(`invalid block name: ${ name }`);
-
- return b;
-
- }
-
- // generates a map of the location (and sizes) of all blocks, inputs, & outputs on the graphical editor.
- // necessary to draw lines between connected outputs & inputs.
- getLocationMap = (): LocationMap => {
- const locMap = {};
- const hasExpData = this.props.experimentData !== undefined;
- const ioVerticalOffset = hasExpData ? blockTextHeight : blockTextHeight / 4;
- const notShownBlocks: string[] = hasExpData ? [] : this.props.groups.reduce((arr, g) => g.collapsed ? [...g.blocks, ...arr] : arr, []);
-
- ((Object.entries(this.props.repData.blocks): any): [string, any][])
- .forEach(([name, rep], i) => {
- const data: BlockType = this.findBlock(name);
-
- const [x, y] = convertDataToWorldCoords(rep.col * gridDistance, rep.row * gridDistance);
- const inputs = data.inputs || [];
- const outputs = data.outputs || [];
- const height = ((Math.max(inputs.length, outputs.length, 1) + 1) + 1) * blockTextHeight;
- const width = blockWidth;
-
- const locBlock = { x, y, height, width };
-
- locMap[name] = {
- block: locBlock,
- };
-
- if(data.inputs){
- const locInputs = {};
- inputs.forEach((inp, i) => {
- locInputs[inp] = {
- x: x - 8,
- y: (y + blockTextHeight) + (i * blockTextHeight) + (blockTextHeight * 0.3) + ioVerticalOffset,
- width: 8,
- height: blockTextHeight * 0.75,
- };
- });
- locMap[name].inputs = locInputs;
- }
-
- if(data.outputs){
- const locOutputs = {};
- outputs.forEach((out, i) => {
- locOutputs[out] = {
- x: x + blockWidth,
- y: (y + blockTextHeight) + (i * blockTextHeight) + (blockTextHeight * 0.3) + ioVerticalOffset,
- width: 8,
- height: blockTextHeight * 0.75,
- };
- });
- locMap[name].outputs = locOutputs;
- }
- });
-
- const getBlocksBoundingBox = (names: string[], collapsed: boolean) => {
- const blockLocs = names.filter(n => locMap.hasOwnProperty(n)).map(n => locMap[n].block);
- let x = collapsed && !hasExpData ?
- blockLocs.map(l => l.x).reduce((n, x) => n + x, 0) / blockLocs.length :
- Math.min(...blockLocs.map(l => l.x))
- ;
- let y = collapsed && !hasExpData ?
- blockLocs.map(l => l.y).reduce((n, y) => n + y, 0) / blockLocs.length :
- Math.min(...blockLocs.map(l => l.y))
- ;
- if(collapsed && !hasExpData)
- [x, y] = clampCoordsToGrid(x, y);
-
- const width = collapsed && !hasExpData ?
- blockWidth :
- Math.max(...blockLocs.map(l => l.x + l.width - x)) + gridDistance * 2
- ;
- const height = collapsed && !hasExpData ?
- gridDistance * 3 :
- Math.max(...blockLocs.map(l => l.y + l.height - y)) + gridDistance * 2
- ;
-
- return {
- x: x - gridDistance,
- y: y - gridDistance,
- width,
- height,
- };
- };
-
- this.props.groups.forEach(g => {
- // get the x,y,width,height for the group box
- const bbox = getBlocksBoundingBox(g.blocks, g.collapsed);
- locMap[g.name] = {
- block: bbox,
- };
- // if the group is collapsed,
- // patch the locMap so that connections to/from blocks in the group
- // instead are to/from the group block
- if(g.collapsed && !hasExpData){
- g.blocks.forEach(b => {
- if(locMap[b].inputs){
- for(const inp in locMap[b].inputs){
- const o = locMap[b].inputs[inp];
- o.x = bbox.x - 1;
- o.y = bbox.y + bbox.height / 2;
- }
- }
-
- if(locMap[b].outputs){
- for(const out in locMap[b].outputs){
- const o = locMap[b].outputs[out];
- o.x = bbox.x + bbox.width - 2;
- o.y = bbox.y + bbox.height / 2;
- }
- }
- });
- }
- });
-
- return locMap;
- }
-
- // manually triggers the svg's context menu
- triggerSvgAction = (x: number, y: number, clickEvent: any) => {
- this.setState({
- svgActionLocation: {
- x,
- y,
- }
- });
-
- if(this.svgContextMenu)
- this.svgContextMenu.handleContextClick(clickEvent);
- }
-
- scaleD3EventLocation = (d3X: number, d3Y: number): [number, number] => {
- const x = d3X * (this.state.zoomLevel / svgWidth);
- const y = d3Y * (this.state.zoomLevel / svgHeight);
- return [x, y];
- };
-
- selectBlocks = (blocks: BlockType[]) => {
- this.setState({
- selectedBlocks: blocks,
- });
- this.initD3Drag();
- }
-
- // synchronizes setState call via passing a func instead of an object
- // uses names instead of block objects so it can find them in the latest props
- safeSelectBlocksByName = (blockNames: string[]) => {
- this.setState((prevState, props) => {
- return {
- selectedBlocks: blockNames
- .map(name =>
- props.blocks.find(b => b.name === name) ||
- props.datasets.find(b => b.name === name) ||
- props.analyzers.find(b => b.name === name)
- ).filter(b => b)
- };
- });
- this.initD3Drag();
- }
-
- // d3 hooks for dragging blocks around
- // to get around perf problems with updating the entire react state every drag event,
- // a placeholder (that's outside the react framework!) is drawn via d3.
- // only at the end of the drag is the react state updated.
- initD3Drag = () => {
- setTimeout(() => {
- const updateBlockLocations = this.props.updateBlockLocations;
- if(!updateBlockLocations)
- return;
- const that = this;
- // currently debouncing isnt necessary perf-wise
- let startX = 0;
- let startY = 0;
- let dx = 0;
- let dy = 0;
- let mx = 0;
- let my = 0;
- // the event handler for all the drag events in between the start/end
- function dragged(d) {
- // keep track of the change to mouse location across drag events
- dx += d3.event.dx;
- dy += d3.event.dy;
- // if the user has dragged enough to move at least one grid space,
- // calculate the amount of grid spaces to move
- if(Math.abs(dx) > gridDistance){
- mx = Math.round(dx / gridDistance);
- dx = dx - mx * gridDistance;
- }
- if(Math.abs(dy) > gridDistance){
- my = Math.round(dy / gridDistance);
- dy = dy - my * gridDistance;
- }
- // if theres any grid movement to be made, make it
- if(mx != 0 || my != 0){
- const dRect = d3.select('.dragRect');
- dRect
- .attr('x', Number.parseInt(dRect.attr('x')) + mx * gridDistance)
- .attr('y', Number.parseInt(dRect.attr('y')) + my * gridDistance);
- }
- // reset the grid movement since we made it already
- mx = 0;
- my = 0;
- }
-
- // when the user starts dragging, create the placeholder block
- function startDrag(d) {
- const b = d3.select(this);
- const x = Number.parseFloat(b.attr('x'));
- const y = Number.parseFloat(b.attr('y'));
- const height = b.attr('height');
- const width = b.attr('width');
- startX = x / gridDistance;
- startY = y / gridDistance;
-
- d3.select('svg')
- .insert('rect', '.tcBlock')
- .attr('class', 'dragRect')
- .attr('fill', 'grey')
- .attr('stroke', 'black')
- .attr('stroke-width', '2')
- .attr('stroke-dasharray', '10, 10')
- .attr('opacity', '0.4')
- .attr('x', x)
- .attr('y', y)
- .attr('height', height)
- .attr('width', width)
- ;
-
- // reset vals for a new drag
- dx = 0;
- dy = 0;
- mx = 0;
- my = 0;
- }
-
- // when the user lets go, move the block to the location of the placeholder
- function endDrag(d) {
- const dRect = d3.select('.dragRect');
- const d3this = d3.select(this);
- const x = Number.parseInt(dRect.attr('x')) / gridDistance;
- const y = Number.parseInt(dRect.attr('y')) / gridDistance;
- const xShift = x - startX;
- const yShift = y - startY;
- if(xShift !== 0 || yShift !== 0){
- let bNames = [];
- if(d3this.classed('areaSelect')){
- bNames = that.state.selectedBlocks.map(b => b.name);
- } else if(d3this.classed('tcGroup')){
- const gId = d3this.attr('id').slice(6);
- const g = that.props.groups.find(g => g.name === gId);
- if(!g)
- return;
- bNames = g.blocks;
- } else {
- bNames = [d3this.attr('id').slice(6)];
- }
-
- const bLocs = bNames.map(b => {
- const x = that.props.repData.blocks[b].col;
- const y = that.props.repData.blocks[b].row;
- const bx = x + xShift;
- const by = y + yShift;
-
- return {blockName: b, x: bx, y: by};
- });
-
- updateBlockLocations(bLocs);
- }
- dRect.remove();
- }
-
- // all block elements should be draggable
- d3.selectAll('.fo,.areaSelect,.tcGroup').call(
- d3.drag()
- .on('start', startDrag)
- .on('end', endDrag)
- .on('drag', dragged)
- );
- }, 50);
- };
-
- // d3 behaviour for connecting an output and input and creating a connection
- // allows users to drag from output to input,
- // or click an output and click an input
- initD3Connections = () => {
- // creating connections
- setTimeout(() => {
- let startId;
- const createConnection = this.props.createConnection;
- const channelColors = this.props.repData.channel_colors;
- const {datasets, blocks} = this.props;
- let startBlock;
- let startX = 0;
- let startY = 0;
- // the user has started dragging from an output block,
- // or it might be starting a click event!
- // to see if the user is clicking or dragging,
- // check in endDrag() if the distance travelled is small
- // enough to be considered a click or not
- function startDrag(d) {
- //console.log('startDrag');
- startX = d3.event.x;
- startY = d3.event.y;
- // find the block that the user started from
- const rawId = d3.select(this).attr('id');
- const bName = rawId.split('-output-')[0];
- startId = rawId.replace('-output-', '.');
- startBlock = datasets.find(d => d.name === bName);
- if(!startBlock)
- startBlock = blocks.find(d => d.name === bName);
- // draw a line from the output rect to the mouse location
- d3.select('svg')
- .append('line')
- .classed('tmp', true)
- .attr('stroke', 'black')
- .attr('x1', startX)
- .attr('y1', startY)
- .attr('x2', startX)
- .attr('y2', startY);
- }
-
- const processEndBlock = (endInput: HTMLElement) => {
- if(!startBlock)
- return;
- //console.log(endInput);
- const endId = endInput.id.replace('-input-', '.');
- // create a new connection assuming theres a given func that does it
- if(createConnection)
- createConnection(startId, endId, startBlock.synchronized_channel || startBlock.name);
-
- startBlock = undefined;
- };
-
- // create a connection if the user ended the drag on an input block,
- // else just remove the temp svg line
- function endDrag(d) {
- //console.log('endDrag');
- const {x, y} = d3.event;
- if(Math.abs(startX - x) < 10 && Math.abs(startY - y) < 10) {
- // click event not drag
- } else {
- // probably not a click event
- d3.select('.tmp').remove();
- // with the location of the end event,
- // compare the location to the location & dims of all input blocks
- // in the svg.
- const endInput = Array.from(document.querySelectorAll('.iBlock'))
- .find(n => {
- const nx = n.x.baseVal.value;
- const ny = n.y.baseVal.value;
- const width = n.width.baseVal.value;
- const height = n.height.baseVal.value;
- return nx <= x && x <= nx + width && ny <= y && y <= ny + height;
- });
- if(endInput === undefined){
- startBlock = undefined;
- } else {
- processEndBlock(endInput);
- }
- }
- }
-
- // create a connection if the user clicked an input block,
- // else just reset the startBlock
- function endClick() {
- processEndBlock(this);
- }
-
- // update the temp line
- function dragged() {
- d3.select('.tmp')
- .attr('x2', d3.event.x)
- .attr('y2', d3.event.y);
- }
-
- d3.selectAll('.oBlock')
- .call(
- d3.drag()
- .on('start', startDrag)
- .on('end', endDrag)
- .on('drag', dragged)
- );
-
- d3.selectAll('.iBlock')
- .on('click', endClick);
- }, 50);
- }
-
- // show a little black dot signifying the closest grid point to the current mouse location.
- // right-clicking the svg background will use this location for its context menu's actions (e.g. adding/pasting blocks).
- initD3MouseMovement = () => {
- // mouse movement
- setTimeout(() => {
- let cx = 0;
- let cy = 0;
-
- d3.select('.puck')
- .remove();
-
- // draw the puck
- d3.select('svg')
- .insert('circle', '.backgroundLimit')
- .attr('class', 'puck background')
- .attr('cx', 0)
- .attr('cy', 0)
- .attr('r', 5);
-
- const svg = document.querySelector('svg');
- // when the mouse moves, recalc the puck's point on the grid
- // needs to scale to the zoomlevel
- d3.select('svg')
- .on('mousemove', () => {
- const [rawx, rawy] = d3.mouse(svg);
- const [x, y] = clampCoordsToGrid(rawx, rawy);
- cx = x;
- cy = y;
- d3.select('.puck')
- .attr('cx', cx)
- .attr('cy', cy)
- ;
- })
- // if the click event's target is the svg background,
- // trigger the svg action at the puck's current point
- .on('contextmenu', () => {
- if(!Array.from(d3.event.target.classList).includes('background'))
- return;
- const [xData, yData] = convertWorldToDataCoords(cx, cy);
- this.triggerSvgAction(xData / gridDistance, yData / gridDistance, d3.event);
- })
- ;
- }, 50);
- }
-
- // d3 behaviour for selecting all blocks inside a rect (via click-and-drag)
- initD3AreaSelect = () => {
- setTimeout(() => {
- const {findBlock, selectBlocks} = this;
- let startX, startY;
- let currX, currY;
- const getPolygonPoints = () => {
- return `${ startX },${ startY } ${ startX },${ currY } ${ currX },${ currY } ${ currX },${ startY }`;
- };
- function startDrag(d) {
- const [rawx, rawy] = d3.mouse(document.querySelector('svg'));
- const [x, y] = clampCoordsToGrid(rawx, rawy);
- startX = x;
- startY = y;
- currX = x;
- currY = y;
- d3.select('svg')
- .insert('polygon', '.backgroundLimit')
- .attr('class', 'tmp')
- .attr('fill', 'grey')
- .attr('stroke', 'black')
- .attr('opacity', '0.3')
- .attr('points', getPolygonPoints())
- ;
- }
-
- function endDrag(d) {
- const p = d3.select('polygon.tmp');
- const lesserX = Math.min(startX, currX);
- const lesserY = Math.min(startY, currY);
- const greaterX = Math.max(startX, currX);
- const greaterY = Math.max(startY, currY);
- const isInArea = (svgEl) => {
- const ex = svgEl.x.baseVal.value;
- const ey = svgEl.y.baseVal.value;
- const ew = svgEl.width.baseVal.value;
- const eh = svgEl.height.baseVal.value;
- if(ex >= greaterX || ex + ew <= lesserX)
- return false;
- if(ey >= greaterY || ey + eh <= lesserY)
- return false;
- return true;
- };
- const blocksInArea = Array.from(document.querySelectorAll('.fo'))
- .filter(el => isInArea(el))
- .map(el => el.id.slice(6))
- .map(name => findBlock(name))
- ;
-
- selectBlocks(blocksInArea);
-
- p.remove();
- startX = 0;
- startY = 0;
- currX = 0;
- currY = 0;
- }
-
- // update the temp rect
- function dragged(d) {
- const [rawx, rawy] = d3.mouse(document.querySelector('svg'));
- const [x, y] = clampCoordsToGrid(rawx, rawy);
- currX = x;
- currY = y;
- d3.select('polygon.tmp')
- .attr('points', getPolygonPoints())
- ;
- }
-
- d3.selectAll('.background').call(
- d3.drag()
- .on('start', startDrag)
- .on('end', endDrag)
- .on('drag', dragged)
- );
- }, 50);
- }
-
- fitToToolchain = (locMap: LocationMap) => {
- if(!this.scrollElement)
- return;
-
- // need to check the editorWrapper size dynamically
- // because it changes when the user maximizes/minimizes the editor
- const editorWrapper = document.querySelector('.editorWrapper');
- if(!editorWrapper)
- return;
- const wrapperWidth = editorWrapper.offsetWidth;
- const wrapperHeight = editorWrapper.offsetHeight;
-
- // find the min/max coords (boundaries) for the entire toolchain
- const ls = ((Object.values(locMap): any): LocationMapEntry[]);
- const minX = Math.min(...ls.map(l => l.block.x));
- const minY = Math.min(...ls.map(l => l.block.y));
- const maxX = Math.max(...ls.map(l => l.block.x + l.block.width));
- const maxY = Math.max(...ls.map(l => l.block.y + l.block.height));
-
- // calculate needed zoom level via the largest dimension
- const width = (maxX - minX) * svgWidth / wrapperWidth;
- const height = (maxY - minY) * svgWidth / wrapperHeight;
- // the scrollbars cut into the space so pad it a bit
- const zoomScaling = 1.05;
- const maxDimension = Math.max(Math.max(width, height) * zoomScaling, minZoomLevel);
- // zoom so the entire toolchain can fit in the window
- this.setZoomLevel(maxDimension);
-
- // scroll to view the entire toolchain
- const scaleFactor = startingZoomLevel / maxDimension;
- const centerX = Number.isFinite(minX) ? minX : svgWidthHalf - wrapperWidth / 4;
- const centerY = Number.isFinite(minY) ? minY : svgHeightHalf - wrapperHeight / 4;
- this.scrollTo(centerX * scaleFactor, centerY * scaleFactor);
- }
-
- render = () => {
- const gridX = gridDistance;
- const gridY = gridDistance;
- const locMap = this.getLocationMap();
- // scales width/height to the zoomlevel so the background grid lines cover the entire svg
- const scaledSvgWidth = svgWidth * (this.state.zoomLevel / startingZoomLevel);
- const scaledSvgHeight = svgHeight * (this.state.zoomLevel / startingZoomLevel);
-
- const getBlocksBoundingBox = (names: string[]) => {
- const blockLocs = names.filter(n => locMap.hasOwnProperty(n)).map(n => locMap[n].block);
- const xMin = Math.min(...blockLocs.map(l => l.x));
- const yMin = Math.min(...blockLocs.map(l => l.y));
- const width = Math.max(...blockLocs.map(l => l.x + l.width - xMin));
- const height = Math.max(...blockLocs.map(l => l.y + l.height - yMin));
-
- return {
- x: xMin - gridDistance,
- y: yMin - gridDistance,
- width: width + gridDistance * 2,
- height: height + gridDistance * 2,
- };
- };
-
- const selectedBlockNames = this.state.selectedBlocks.map(b => b.name);
- const selectBoxCoords = getBlocksBoundingBox(selectedBlockNames);
- const hiddenBlocks = this.props.experimentData !== undefined ? [] : this.props.groups.reduce((bs, g) => g.collapsed ? [...g.blocks, ...bs] : bs, []);
- const shownConnections = (
- selectedBlockNames.length === 0 ? this.props.connections : this.props.connections
- .filter(conn => selectedBlockNames.find(n => conn.from.startsWith(`${ n }.`) || conn.to.startsWith(`${ n }.`)))
- ).filter(({ from, to }) => {
- const fb = from.split('.')[0];
- const tb = to.split('.')[0];
- return !this.props.groups.find(g => g.collapsed && g.blocks.includes(fb) && g.blocks.includes(tb));
- })
- ;
-
-
- const datasetData = {};
- for(const b of this.props.datasets){
- datasetData[b.name] = b;
- }
- const blockData = {};
- for(const b of this.props.blocks){
- blockData[b.name] = b;
- }
- const analyzerData = {};
- for(const b of this.props.analyzers){
- analyzerData[b.name] = b;
- }
-
- return (
- <div className={cn('editorWrapper', {maximized: this.state.maximized})}>
- <div className='editorMenu'>
- <ButtonGroup>
- { this.props.toolbarContent || null }
- <Button
- size='sm'
- onClick={this.zoomOut}
- >
- Zoom out
- </Button>
- <Button
- size='sm'
- onClick={this.zoomIn}
- >
- Zoom in
- </Button>
- <Button
- size='sm'
- onClick={() => this.fitToToolchain(locMap)}
- >
- Fit
- </Button>
- <Button
- size='sm'
- onClick={this.toggleMaximized}
- >
- { this.state.maximized ? 'Pop In' : 'Pop Out' }
- </Button>
- { !this.props.experimentData &&
- <Button
- color='primary'
- size='sm'
- onClick={this.toggleHelp}
- >
- See help
- </Button>
- }
- </ButtonGroup>
- </div>
- <div className='editorWrapper2'
- ref={e => this.scrollElement = e}
- >
- <svg
- onClick={e => {
- if((e.button === 0 || e.button === undefined) && this.props.handleBackgroundClick)
- this.props.handleBackgroundClick(e);
- }}
- className='background'
- width={svgWidth}
- height={svgHeight}
- viewBox={this.getSvgViewBox()}
- onWheel={e => {
- // zoom when scrolling only with the shift key held
- if(!e.shiftKey)
- return;
-
- e.preventDefault();
- if(e.deltaY < 0)
- this.zoomIn();
- else if(e.deltaY > 0)
- this.zoomOut();
- }}
- >
- {
- /* horizontal grid lines */
- [...Array(Math.round(scaledSvgHeight / gridY))].map((u, i) => {
- return (
- <line
- className='background'
- key={`gridY${ i }`}
- x1={0}
- y1={i * gridY}
- x2={scaledSvgWidth}
- y2={i * gridY}
- stroke='#EEEEEE'
- strokeWidth={1}
- />
- );
- })
- }
-
- {
- /* vertical grid lines */
- [...Array(Math.round(scaledSvgWidth / gridX))].map((u, i) => {
- return (
- <line
- className='background'
- key={`gridX${ i }`}
- x1={i * gridX}
- y1={0}
- x2={i * gridX}
- y2={scaledSvgHeight}
- stroke='#EEEEEE'
- strokeWidth={1}
- />
- );
- })
- }
- <line
- className='background'
- id='gridXCenter'
- x1={0}
- y1={svgHeightHalf - 2}
- x2={scaledSvgWidth}
- y2={svgHeightHalf - 2}
- stroke='gainsboro'
- strokeWidth={4}
- />
- <line
- className='background'
- id='gridYCenter'
- x1={svgWidthHalf - 2}
- y1={0}
- x2={svgWidthHalf - 2}
- y2={scaledSvgHeight}
- stroke='gainsboro'
- strokeWidth={4}
- />
-
- <g className='backgroundLimit'>
- </g>
-
- {
- this.props.groups.map(({name, blocks, collapsed}, i) => {
- const {x, y, width, height} = locMap[name].block;
- const nameClipId = `groupClip_${ name }`;
- return (
- <ContextMenuTrigger
- key={i}
- id='groupContextMenu'
- collect={props => ({ group: name, selectBlocks: this.selectBlocks })}
- renderTag='g'
- >
- <rect
- id={`group_${ name }`}
- className='tcGroup'
- x={x}
- y={y}
- width={width}
- height={height}
- fill='grey'
- opacity='0.2'
- >
- <title>Group { `"${ name }"` } contains { blocks.join(', ') }</title>
- </rect>
- <text
- x={x}
- y={y + 16}
- clipPath={`url(#${ nameClipId })`}
- >
- { name }
- </text>
- <clipPath id={nameClipId}>
- <rect
- x={x}
- y={y}
- height={height}
- width={width}
- />
- </clipPath>
- </ContextMenuTrigger>
- );
- })
- }
-
- {
- Number.isFinite(selectBoxCoords.x) &&
- <ContextMenuTrigger
- id='areaSelectContextMenu'
- renderTag='g'
- collect={props => ({ selection: this.state.selectedBlocks })}
- >
- <rect
- className='areaSelect'
- x={selectBoxCoords.x}
- y={selectBoxCoords.y}
- width={selectBoxCoords.width}
- height={selectBoxCoords.height}
- fill='grey'
- opacity='0.5'
- />
- </ContextMenuTrigger>
- }
- <ContextMenuTrigger
- id='connectionContextMenu'
- renderTag='g'
- ref={e => this.connectionContextMenu = e}
- collect={props => ({ connection: this.state.rightClickConnection })}
- >
- <g></g>
- </ContextMenuTrigger>
- <ContextMenuTrigger
- id='blockContextMenu'
- renderTag='g'
- ref={e => this.blockContextMenu = e}
- collect={props => ({ name: this.state.rightClickBlock })}
- >
- <g></g>
- </ContextMenuTrigger>
-
- {
- /* connections between blocks */
- shownConnections.map((conn, i) => {
- const fromInfo = conn.from.split('.');
- const toInfo = conn.to.split('.');
-
- const fromLoc = locMap[fromInfo[0]].outputs[fromInfo[1]];
- const toLoc = locMap[toInfo[0]].inputs[toInfo[1]];
- return (
- <Connection
- key={i}
- connection={conn}
- locMap={locMap}
- fromLocMap={fromLoc}
- toLocMap={toLoc}
- channelColor={this.props.repData.channel_colors[conn.channel]}
- errors={this.props.errorBlocks ? this.props.errorBlocks[connectionToId(conn)] || [] : []}
- handleContextMenu={this.handleConnectionContextMenu}
- />
- );
- })
- }
-
- {
- /* blocks */
- Object.entries(this.props.repData.blocks)
- .filter(([name, rep]) => !hiddenBlocks.includes(name))
- .map(([name, rep], i) => {
- // assume the block is in "blocks"
- let data: ?BlockType = blockData[name];
- // find the set the block belongs to manually
- let set: BlockSet = 'blocks';
- if(data === undefined){
- // if its not in there, try datasets
- data = datasetData[name];
- set = 'datasets';
- if(data === undefined){
- // the block isnt in datasets, is in analyzers
- data = analyzerData[name];
- set = 'analyzers';
- }
- }
- if(!data)
- return null;
-
- const isSelected = this.state.selectedBlocks.find(b => b.name === name);
-
- /*
- * the block handleClick must be bound here, not in a different file!
- * it needs to be bound afterish the d3 drag setup code runs
- */
- return (
- <Block
- key={i}
- name={name}
- locMap={locMap[name]}
- data={data}
- set={set}
- highlighted={isSelected !== undefined || (this.props.focusBlocks !== undefined && this.props.focusBlocks.includes(name))}
- handleClick={() => this.props.handleBlockClick ? this.props.handleBlockClick(name, set) : undefined}
- handleShiftClick={() => {
- const sels = this.state.selectedBlocks;
- if(!this.props.interactable)
- return;
- if(sels.find(b => b.name === name))
- this.selectBlocks(sels.filter(b => b.name !== name));
- else
- this.selectBlocks([...sels, data]);
- }}
- channelColor={this.props.repData.channel_colors[data.synchronized_channel || data.name]}
- opacity={isSelected ? 0.5 : 1}
- experimentString={this.props.experimentData ? this.props.experimentData[name] || 'Not Selected' : undefined}
- errors={this.props.errorBlocks ? this.props.errorBlocks[name] || [] : []}
- handleContextMenu={this.handleBlockContextMenu}
- />
- );
- })
- }
- { this.props.svgChildren }
- </svg>
- {/* the trigger to the menu that pops up on left-clicking the background.
- * there needs to be a <ContextMenu> element with the same id somewhere in the divChildren to show anything.
- */}
- <ContextMenuTrigger
- id='svgContextMenu'
- ref={e => this.svgContextMenu = e}
- collect={props => ({...this.state.svgActionLocation, selectBlocks: this.safeSelectBlocksByName})}
- attributes={{
- onContextMenu: (e) => {
- e.stopPropagation();
- e.preventDefault();
- }
- }}
- >
- <span></span>
- </ContextMenuTrigger>
- { this.props.divChildren }
- </div>
- <HelpModal
- toggle={this.toggleHelp}
- active={this.state.helpActive}
- />
- </div>
- );
- }
-}
diff --git a/conda/js/src/components/toolchain/GraphicalEditorHelpModal.jsx b/conda/js/src/components/toolchain/GraphicalEditorHelpModal.jsx
deleted file mode 100644
index bc6f7a7e658aac47cf45bfbaefd89a9efc43e7d7..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/GraphicalEditorHelpModal.jsx
+++ /dev/null
@@ -1,239 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- TabContent, TabPane,
- Alert,
- Badge,
- Modal, ModalBody, ModalHeader, ModalFooter,
- Table,
-} from 'reactstrap';
-
-type Props = {
- // func to close modal
- toggle: () => any,
- // is the modal active?
- active: boolean,
-};
-
-class GraphicalEditorHelpModal extends React.PureComponent<Props> {
- constructor(props: Props){
- super(props);
- }
-
- render = () => {
- return (
- <Modal
- size='lg'
- isOpen={this.props.active}
- toggle={this.props.toggle}
- fade={true}
- onOpened={e => {
- /*
- const f = document.querySelector('#tcModalInitFocus');
- if(f && f.focus)
- f.focus();
- */
- }}
- >
- <ModalHeader toggle={this.props.toggle}>
- Graphical Editor
- </ModalHeader>
- <ModalBody>
- <h3>How do I...</h3>
- <h5>Add a block?</h5>
- <p>
- Right-clicking anywhere on the background grid will open a menu for adding (or pasting) blocks to the grid point where the puck (the black dot that follows your mouse) is.
- </p>
- <h5>Change the information of a block?</h5>
- <p>
- Left-clicking on a block will bring up the Block Editor modal, which lets you change the block name, add & remove & rename inputs and outputs, change the synchronized channel, and delete the block. Remember to click <i>Save Changes</i>! If you want to discard your changes, you can either click outside of the modal or click the <b>x</b> button on the top-right corner.
- </p>
- <h5>Create a connection?</h5>
- <p>
- Connections are between an output of a block and an input of a block. To create a connection, click on the black rectangle to the right of the desired output, and drag onto the black rectangle next to the desired input.
- </p>
- <h5>Delete a block or connection?</h5>
- <p>
- Besides being able to delete a block in the Block Editor, you can right-click blocks or connections to show a menu where you may delete the corresponding element.
- </p>
- <h5>Temporarily hide connections?</h5>
- <p>
- The editor only displays connections connected to selected blocks. For example, to only see connections to/from Block X, select Block X (via shift+clicking on the block).
- </p>
- <h5>Insert blocks from another toolchain, an algorithm, or a database?</h5>
- <p>
- Right-click on the background grid and select <i>Insert Object Here</i> to insert blocks for an object relative to the position of your mouse. A modal will pop up, and lets you insert a toolchain, algorithm, or part of a database, to easily create toolchains using BEAT objects that you already have created.
- </p>
- <h3>Keyboard Shortcuts</h3>
- <Table striped>
- <thead>
- <tr>
- <th>Action</th>
- <th>Shortcut</th>
- <th>Additional Info</th>
- </tr>
- </thead>
- <tbody>
- <tr>
- <td>
- Pan
- </td>
- <td><pre className='preInline'>
- Middle-click and move
- </pre></td>
- <td>
- The preferred way to pan around the editor is to use a mouse with middle-click functionality. You can middle-click anywhere in the canvas and then move your mouse to pan around on both axis. If this does not work for you, you may need to turn on <i>autoscrolling</i> in your browser settings.
- </td>
- </tr>
- <tr>
- <td>
- Pan vertically
- </td>
- <td><pre className='preInline'>
- Scroll up/down
- </pre></td>
- <td>
- You can also manually drag the scroll bar on the right edge of the editor.
- </td>
- </tr>
- <tr>
- <td>
- Pan horizontally
- </td>
- <td>
- <pre className='preInline'>Scroll left/right</pre>
- {' '}
- <span>
- or
- </span>
- {' '}
- <pre className='preInline'>Left arrow key & Right arrow key</pre>
- </td>
- <td>
- You can also manually drag the scroll bar on the bottom edge of the editor. To scroll left or right, three-button mice will usually let you click & hold on the middle button to scroll freely.
- </td>
- </tr>
- <tr>
- <td>
- Zoom in/out
- </td>
- <td><pre className='preInline'>
- Shift + scroll up/down
- </pre></td>
- <td>
- You can also use the {`"Zoom in"`} and {`"Zoom out"`} buttons in the top-right menu.
- </td>
- </tr>
- <tr>
- <td>
- Edit a block
- </td>
- <td><pre className='preInline'>
- Left click
- </pre></td>
- <td>
- Left-clicking a block will open a modal where you can edit the block name, the synchronized channel, inputs, and outputs.
- </td>
- </tr>
- <tr>
- <td>
- Move blocks
- </td>
- <td><pre className='preInline'>
- Left click + drag
- </pre></td>
- <td>
- You may move a block at a time by clicking & dragging on a block. You may move a selection or group of blocks by dragging the grey rectangle representing the selection or group.
- </td>
- </tr>
- <tr>
- <td>
- Open a context (right-click) menu
- </td>
- <td><pre className='preInline'>
- Right click
- </pre></td>
- <td>
- There are context menus for: blocks, connections, area selections, groups, and the background.
- </td>
- </tr>
- <tr>
- <td>
- Select Multiple Blocks
- </td>
- <td>
- <pre className='preInline'>
- Shift + left click
- </pre>
- {' '}
- <span>
- or
- </span>
- {' '}
- <pre className='preInline'>
- Click + drag
- </pre>
- </td>
- <td>
- Shift + left-clicking a block will toggle selection. Clicking on the background grid will clear the selection.
- </td>
- </tr>
- <tr>
- <td>
- Create a Connection between an output and an input
- </td>
- <td>
- <pre className='preInline'>
- Left click + drag
- </pre>
- {' '}
- <span>
- on the black rectangle next to the desired output, and release the drag on the black rectangle next to the desired input.
- </span>
- </td>
- <td>
- You can also create a connection by clicking on the black rectangle of an output and then clicking on the black rectangle of an input. This lets you create connections between distant blocks and move around the canvas.
- </td>
- </tr>
- <tr>
- <td>
- Create an Algorithm based on a block
- </td>
- <td>
- <pre className='preInline'>
- Left click
- </pre>
- {' '}
- <span>
- on the block to bring up the block editor. At the top of the modal, enter the username and name for the algorithm to be created, and click the <i>Create</i> button to generate an algorithm based off of the connections, inputs, and outputs of the block. You will have to edit the algorithm in the editor to choose the types, and to add any any parameters or results.
- </span>
- </td>
- <td>
- This only works for normal and analyzer blocks. If you do not see your new algorithm, refresh the browser tab/window.
- </td>
- </tr>
- <tr>
- <td>
- See more information
- </td>
- <td>
- <pre className='preInline'>
- Hover
- </pre>
- </td>
- <td>
- Blocks and connections in the editor have extra information found by hovering over the element for a couple seconds.
- </td>
- </tr>
- </tbody>
- </Table>
- </ModalBody>
- </Modal>
- );
- }
-}
-
-export default GraphicalEditorHelpModal;
diff --git a/conda/js/src/components/toolchain/InsertObjectModal.jsx b/conda/js/src/components/toolchain/InsertObjectModal.jsx
deleted file mode 100644
index 788a81579879efea33539f85c15bf621ba3b6bfe..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/InsertObjectModal.jsx
+++ /dev/null
@@ -1,399 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- TabContent, TabPane,
- Alert,
- Badge,
- Modal, ModalBody, ModalHeader, ModalFooter,
- Table,
- Input,
- Button,
- ButtonGroup,
- FormGroup,
- ListGroup,
- ListGroupItem,
-} from 'reactstrap';
-
-import type { FlattenedDatabaseEntry } from '@store/selectors';
-
-import type { ConnectionType } from '@helpers/toolchainTypes';
-import type { Protocol, Set as ProtocolSet } from '../database/DatabaseEditor.jsx';
-import type { BeatObject } from '@helpers/beat';
-import { generateNewKey } from '@helpers';
-
-import SearchWorker from '@helpers/search.worker.js';
-
-type ObjectTypeOption = 'toolchains' | 'protocols' | 'sets' | 'normalAlgorithms' | 'analyzerAlgorithms';
-
-type Props = {
- // func to close modal
- toggle: () => any,
- // is the modal active?
- active: boolean,
- // user selected a search result
- addNewBlocks: (type: ObjectTypeOption, newBlocksData: any[], newConnections?: ConnectionType[]) => any,
- // all toolchains
- toolchains: BeatObject[],
- // all database protocols
- protocols: BeatObject[],
- // sets of protocols of protocols
- sets: FlattenedDatabaseEntry[],
- // algorithms for normal blocks (inputs & outputs)
- normalAlgorithms: BeatObject[],
- // algorithms for analyzer blocks (inputs & results)
- analyzerAlgorithms: BeatObject[],
- usedNames: string[],
-};
-
-type Res = BeatObject[] | FlattenedDatabaseEntry[] | any;
-
-type State = {
- searchResults: ?Res,
- searchFilter: ObjectTypeOption,
-};
-
-const options: ObjectTypeOption[] = ['toolchains', 'protocols', 'sets', 'normalAlgorithms', 'analyzerAlgorithms'];
-const optionText = {
- toolchains: 'Toolchain',
- protocols: 'Protocol',
- sets: 'Dataset',
- normalAlgorithms: 'Block Algorithm',
- analyzerAlgorithms: 'Analyzer Algorithm',
-};
-
-class InsertObjectModal extends React.PureComponent<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- state = {
- searchResults: this.props[options[0]],
- searchFilter: options[0],
- }
-
- searchWorker = null;
-
- componentDidMount = () => {
- this.searchWorker = new SearchWorker();
- this.searchWorker.onmessage = (m) => {
- this.setState(prevState => ({ searchResults: m.data }));
- };
- this.updateFuseInstance();
- }
-
- componentDidUpdate = (prevProps: Props) => {
- if(this.props[this.state.searchFilter] !== prevProps[this.state.searchFilter]){
- this.updateFuseInstance(this.props[this.state.searchFilter]);
- }
- }
-
- updateFuseInstance = (data: any[] = this.props[this.state.searchFilter]) => {
- if(!this.searchWorker)
- throw new Error(`searchWorker is not instantiated!`);
-
- this.searchWorker.postMessage(
- {
- type: 'dataChanged',
- payload: {
- data,
- options: {
- shouldSort: true,
- threshold: 0.6,
- location: 0,
- distance: 100,
- maxPatternLength: 32,
- minMatchCharLength: 1,
- keys: Object.keys(data.length > 0 ? data[0] : {}),
- }
- }
- }
- );
- }
-
- search = (str: string) => {
- if(!this.searchWorker)
- throw new Error(`searchWorker is not instantiated!`);
- this.searchWorker.postMessage(
- {
- type: 'search',
- payload: str
- }
- );
- }
-
- updateSearchFilter = (filter: ObjectTypeOption) => {
- this.setState(prevState => ({
- searchFilter: filter,
- searchResults:this.props[filter],
- }));
- this.updateFuseInstance(this.props[filter]);
- }
-
- stringifyResult = (obj: any, type: ObjectTypeOption): string => {
- if(!obj)
- return '';
- switch(type){
- case 'toolchains':
- // tc obj
- return `datasets: ${ obj.contents.datasets.length }, blocks: ${ obj.contents.blocks.length }`;
- case 'protocols':
- // protocol obj w "database" field for db name
- return `sets: ${ obj.sets.length }`;
- case 'sets':
- // set w protocol & db
- return `outputs: ${ Object.keys(obj.outputs).length }`;
- case 'normalAlgorithms':
- // alg obj
- return `inputs: ${
- obj.contents.groups.reduce((iNum, g) => g.inputs ? iNum + Object.keys(g.inputs).length : iNum, 0)
- }, outputs: ${
- obj.contents.groups.reduce((iNum, g) => g.outputs ? iNum + Object.keys(g.outputs).length : iNum, 0)
- }`;
- case 'analyzerAlgorithms':
- // alg obj
- return `inputs: ${
- obj.contents.groups.reduce((iNum, g) => g.inputs ? iNum + Object.keys(g.inputs).length : iNum, 0)
- }`;
- default:
- return obj.name;
- }
- }
-
- stringifyResultName = (obj: any) => {
- if(!obj)
- return '';
- if(obj.set)
- return `${ obj.protocol }/${ obj.set } (${ obj.database })`;
- if(obj.database)
- return `${ obj.name } (${ obj.database })`;
- if(obj.name)
- return obj.name;
- return 'undefined';
- }
-
- generateNewBlockData = (obj: any): {blocks: any[], connections: ConnectionType[]} | any[] => {
- const copiedObj = JSON.parse(JSON.stringify(obj));
- const usedNames = this.props.usedNames;
- const type = this.state.searchFilter;
- switch(type){
- case 'toolchains':
- const rep = copiedObj.contents.representation.blocks;
- // add blocks/connections from a toolchain
- // map all the blocks to new data to give to addBlocks()
- const newBlocksData = [
- ...copiedObj.contents.datasets
- .map((blk) => ([generateNewKey(blk.name, usedNames), 'datasets', rep[blk.name].col, rep[blk.name].row, blk])),
- ...copiedObj.contents.blocks
- .map((blk) => ([generateNewKey(blk.name, usedNames), 'blocks', rep[blk.name].col, rep[blk.name].row, blk])),
- ...copiedObj.contents.analyzers
- .map((blk) => ([generateNewKey(blk.name, usedNames), 'analyzers', rep[blk.name].col, rep[blk.name].row, blk])),
- ];
-
- const nameMap = {};
- for(const b of newBlocksData){
- nameMap[b[4].name] = b[0];
- if(b[1] === 'blocks' || b[1] === 'analyzers')
- b[4].synchronized_channel = nameMap[b[4].synchronized_channel];
- }
-
- const connections = copiedObj.contents.connections
- .map(({ from, to, channel }) => {
- const fromSplit = from.split('.');
- const toSplit = to.split('.');
- return {
- from: `${ nameMap[fromSplit[0]] }.${ fromSplit[1] }`,
- to: `${ nameMap[toSplit[0]] }.${ toSplit[1] }`,
- channel: nameMap[channel],
- };
- });
-
- // reset the locations of all these blocks - make sure that the point (0,0) is at the top-left of the toolchain
- const minX = Math.min(...newBlocksData.map(d => d[2]));
- const minY = Math.min(...newBlocksData.map(d => d[3]));
- for(const b of newBlocksData){
- b[2] -= minX;
- b[3] -= minY;
- b[4].name = b[0];
- }
-
- return {
- blocks: newBlocksData,
- connections,
- };
- case 'protocols':
- // add a block for each set in each protocol in the database
- const newBlocks = obj.sets
- // compile basic info for the set (the new name & the outputs for the block)
- .map((set, i) => ({
- name: generateNewKey(`${ obj.name }_${ set.name }`, usedNames),
- outputs: Object.keys(set.outputs),
- }))
- // convert the set's basic info into data arrs for addBlocks()
- .map((setData, i) => [setData.name, 'datasets', 0, 0, { outputs: setData.outputs }]);
-
- // shift the y coord of each new block down according to the # of outputs
- // accumulate this change so the blocks will all be x-aligned with 1 row between them
- let yCount = 0;
- for(const i in newBlocks){
- newBlocks[i][3] = yCount;
- yCount += newBlocks[i][4].outputs.length + 3;
- }
-
- return newBlocks;
- case 'sets':
- // add from database's protocol's set
- const setBlock = [
- generateNewKey(`${ obj.protocol }_${ obj.set }`, usedNames),
- 'datasets',
- 0,
- 0,
- { outputs: Object.keys(obj.outputs) }
- ];
-
- return [setBlock];
- case 'normalAlgorithms':
- // create a block compatible with the alg
- const normalBlock = [
- generateNewKey(obj.name.replace(/\//g, '_'), usedNames),
- 'blocks',
- 0,
- 0,
- {
- outputs: Object.keys(obj.contents.groups[0].outputs),
- inputs: obj.contents.groups
- .map(g => Object.keys(g.inputs))
- .reduce((arr, is) => [...arr, ...is], []),
- synchronized_channel: '',
- }
- ];
-
- return [normalBlock];
- case 'analyzerAlgorithms':
- // create a block compatible with the alg
- const analyzerBlock = [
- generateNewKey(obj.name.replace(/\//g, '_'), usedNames),
- 'analyzers',
- 0,
- 0,
- {
- inputs: obj.contents.groups
- .map(g => Object.keys(g.inputs))
- .reduce((arr, is) => [...arr, ...is], []),
- synchronized_channel: '',
- }
- ];
-
- return [analyzerBlock];
- default:
- return [];
- }
- }
-
- render = () => {
- return (
- <Modal
- size='lg'
- isOpen={this.props.active}
- toggle={this.props.toggle}
- fade={true}
- onOpened={e => {
- /*
- const f = document.querySelector('#tcModalInitFocus');
- if(f && f.focus)
- f.focus();
- */
- }}
- >
- <ModalHeader toggle={this.props.toggle}>
- Insert blocks from an existing object
- </ModalHeader>
- <ModalBody>
- <FormGroup row>
- <Col>
- <span className='text-muted'>
- Insert the blocks from a compatible BEAT object into this toolchain. You may insert an existing toolchain or blocks generated from a database protocol, database protocol set, or algorithm.
- </span>
- </Col>
- </FormGroup>
- <FormGroup row>
- <Col>
- </Col>
- <Col sm='auto'>
- <ButtonGroup>
- {
- options.map((o, i) => {
- const isCurrentOption = this.state.searchFilter === o;
- return (
- <Button
- key={i}
- onClick={e => this.updateSearchFilter(o)}
- color={isCurrentOption ? 'primary' : 'secondary'}
- >
- { optionText[o] }
- </Button>
- );
- })
- }
-
- </ButtonGroup>
- </Col>
- <Col>
- </Col>
- </FormGroup>
- <FormGroup row>
- <Col sm={12}>
- <Input
- type='text'
- placeholder='Search...'
- onChange={e => this.search(e.target.value)}
- autoFocus
- />
- </Col>
- </FormGroup>
- <FormGroup row>
- <Col sm={12}>
- <ListGroup className='searchResults'>
- {
- this.state.searchResults &&
- this.state.searchResults.map((res, i) =>
- <ListGroupItem
- key={i}
- tag='button'
- action
- onClick={e => {
- const newData = this.generateNewBlockData(res);
- if(Array.isArray(newData))
- this.props.addNewBlocks(
- this.state.searchFilter,
- newData,
- );
- else
- this.props.addNewBlocks(
- this.state.searchFilter,
- newData.blocks,
- newData.connections,
- );
- this.props.toggle();
- }}
- >
- { this.stringifyResultName(res) }
- {' '}
- <small className='text-muted'>
- { this.stringifyResult(res, this.state.searchFilter) }
- </small>
- </ListGroupItem>
- )
- }
- </ListGroup>
- </Col>
- </FormGroup>
- </ModalBody>
- </Modal>
- );
- }
-}
-
-export default InsertObjectModal;
diff --git a/conda/js/src/components/toolchain/RenameGroupModal.jsx b/conda/js/src/components/toolchain/RenameGroupModal.jsx
deleted file mode 100644
index bdee3cf31e6e739b1265423f97cceb8752995cfd..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/RenameGroupModal.jsx
+++ /dev/null
@@ -1,93 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Modal, ModalBody, ModalHeader, ModalFooter,
- Button,
- Form,
-} from 'reactstrap';
-
-import { generateNewKey } from '@helpers';
-
-import CacheInput from '../CacheInput.jsx';
-
-type Props = {
- // func to close modal
- toggle: () => any,
- // is the modal active?
- active: boolean,
- currentName: string,
- usedNames: string[],
- saveNewName: (newName: string) => any,
-};
-
-type State = {
- newName: string,
-};
-
-class RenameGroupModal extends React.PureComponent<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- state = {
- newName: this.props.currentName,
- }
-
- componentDidUpdate = (prevProps: Props) => {
- if(this.props.currentName !== prevProps.currentName){
- this.setState({ newName: this.props.currentName });
- }
- }
-
- validateFunc = (str: string) => {
- if(str === this.props.currentName)
- return true;
- if(!this.props.usedNames.includes(str))
- return true;
- return <span>The group name must be unique across all block & group names in the toolchain</span>;
- }
-
- saveNewName = () => {
- this.props.saveNewName(this.state.newName);
- this.props.toggle();
- }
-
- render = () => {
- return (
- <Modal
- isOpen={this.props.active}
- toggle={this.props.toggle}
- fade={true}
- >
- <ModalHeader toggle={this.props.toggle}>
- Rename Group { `"${ this.props.currentName }"` }
- </ModalHeader>
- <ModalBody>
- <Form
- onSubmit={this.saveNewName}
- >
- <CacheInput
- delay={0}
- autoFocus
- fieldTest
- value={this.state.newName}
- validateFunc={this.validateFunc}
- onChange={e => this.setState({ newName: e.target.value })}
- />
- </Form>
- </ModalBody>
- <ModalFooter>
- <Button
- block
- onClick={this.saveNewName}
- >
- Save Changes
- </Button>
- </ModalFooter>
- </Modal>
- );
- }
-}
-
-export default RenameGroupModal;
diff --git a/conda/js/src/components/toolchain/ToolchainBlock.jsx b/conda/js/src/components/toolchain/ToolchainBlock.jsx
deleted file mode 100644
index b06ea775e8e57621996f36facea72260ddd4606a..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/ToolchainBlock.jsx
+++ /dev/null
@@ -1,308 +0,0 @@
-// @flow
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- Button,
- ButtonGroup,
- Form,
- FormGroup,
- Label,
- Input,
- InputGroup,
- FormText,
- Collapse,
- Card,
- CardHeader,
- CardBody,
- TabContent, TabPane,
- Navbar,
- Nav, NavItem, NavLink, CardTitle, CardText,
- FormFeedback,
- Alert,
- InputGroupAddon,
- Badge,
-} from 'reactstrap';
-import { ContextMenuTrigger } from 'react-contextmenu';
-import cn from 'classnames';
-import type { BlockSet, BlockCoords } from '@helpers/toolchainTypes';
-
-export type Props = {
- name: string,
- // provides the location & dimensions of the svg elements of the block
- // (the block itself & its inputs/outputs)
- locMap: {
- block: BlockCoords,
- inputs?: { [string]: BlockCoords },
- outputs?: { [string]: BlockCoords },
- },
- // the block data (name, i/os, channel, etc.)
- data: any,
- // the set the block belongs to ('blocks', 'datasets', or 'analyzers')
- set: BlockSet,
- // handler for the user clicking the block
- handleClick: (name: string, set: BlockSet) => any,
- // handler for the user clicking the block
- handleShiftClick: (name: string, set: BlockSet) => any,
- // the color of the channel the block is sync'd to
- channelColor: string,
- // highlighted blocks have a dashed border (see the 'highlighted' CSS class styling in GraphicalEditor.css)
- highlighted: boolean,
- // string to show at the bottom of the block
- // used to display the selected dataset/algorithm in the experiment editor
- experimentString?: string,
- errors: string[],
- handleContextMenu?: (e: any, name: string, set: string) => any,
-};
-
-export const blockNameToId = (name: string) => `block_${ name }`;
-
-class ToolchainBlock extends React.Component<Props> {
- constructor(props: Props){
- super(props);
- }
-
- /*
- * Custom implementation of shouldComponentUpdate for performance reasons!
- * "Why not just use PureComponent??"
- * PureComponent implements a default shouldComponentUpdate that shallowly compares
- * all current & next props/state values.
- * Because the click handlers are always not equal (since they're dynamically generated in the loop in
- * GraphicalEditor.jsx), blocks are *always* rerendered.
- * Also, the locMap object of every block is technically somehow a different object whenever
- * a subset of the blocks are moved.
- * This means that every block change means rerendering all the blocks.
- * By writing a custom shouldComponentUpdate, we can use more detailed logic that prevents
- * the unnecessary rerenders.
- * A couple things to keep in mind:
- * - the click handlers dont functionally change if the block data doesnt change.
- * - the locMap's inputs&outputs values dont change if the block's locMap or data hasnt changed
- * - the errors array is a different array every time technically, so check the values
- */
- shouldComponentUpdate(nextProps: Props){
- for(const key in nextProps){
- if(key === 'locMap' || key === 'handleClick' || key === 'handleShiftClick' || key === 'handleContextMenu'){
- continue;
- } else if(key === 'errors'){
- if(nextProps[key].length !== this.props.errors.length)
- return true;
- for(const i in nextProps[key]){
- if(nextProps[key][i] !== this.props[key][i])
- return true;
- }
- } else if(nextProps[key] !== this.props[key]){
- return true;
- }
- }
-
- const nowLoc = this.props.locMap.block;
- const nextLoc = nextProps.locMap.block;
- if(nowLoc.x !== nextLoc.x)
- return true;
- if(nowLoc.y !== nextLoc.y)
- return true;
- if(nowLoc.width !== nextLoc.width)
- return true;
- if(nowLoc.height !== nextLoc.height)
- return true;
-
- return false;
- }
-
- render = () => {
- const name = this.props.name;
- const {x, y, height, width} = this.props.locMap.block;
-
- const hasInputs = this.props.data && this.props.data.hasOwnProperty('inputs');
- const hasOutputs = this.props.data && this.props.data.hasOwnProperty('outputs');
- const inputs = hasInputs ? this.props.data.inputs : [];
- const outputs = hasOutputs ? this.props.data.outputs : [];
- const nameText = name.length > 17 ? `${ name.slice(0, 17) }…` : name;
- const expStr = this.props.experimentString;
-
- return (
- <g className='tcBlock'>
- {/* white fill background */}
- <rect
- className='tcBlockWhiteFill'
- x={x} y={y} height={height} width={width}
- fill='white'
- />
- {/* color background tint */}
- <rect className={cn('tcBlockBackground', {highlighted: this.props.highlighted})}
- x={x} y={y} height={height} width={width}
- fill={this.props.channelColor}
- fillOpacity={0.05}
- stroke='black'
- />
- {/* block name */}
- <text
- x={x}
- y={y + 16}
- width={width}
- className='tcBlockTitle'
- >
- { nameText }
- </text>
- {/* line below name */}
- <line
- x1={x}
- y1={y + 20}
- x2={x + width}
- y2={y + 20}
- stroke='grey'
- />
- {/* the little upper-right block showing the color of the currently sync'd channel */}
- <rect
- x={x + width - 20}
- y={y}
- width={20}
- height={20}
- fill={this.props.channelColor}
- />
- {/* exp string */}
- { expStr &&
- <text
- x={x}
- y={y + 36}
- fill='slategray'
- >
- { expStr.length > 19 ? `${ expStr.slice(0, 19) }…` : expStr }
- </text>
- }
-
- {
- /* inputs
- * draws the inputs (both the black rects for connections and the corresponding input name)
- */
- inputs.map((inp, i) => {
- // get the location/dimensions of the input
- const loc = this.props.locMap.inputs[inp];
- // width changes between half the block and the full block depending if theres outputs or not
- const varWidth = hasOutputs ? width / 2 : width;
- // the shown text needs to be truncated based on the available space
- // easy to calculate because the text is monospace!
- const maxlen = hasOutputs ? 8 : 19;
- // truncate text, add ellipsis if it's too long
- const text = inp.length > maxlen ? `${ inp.slice(0, maxlen) }…` : inp;
- return (
- <g
- key={i}
- x={loc.x}
- y={loc.y}
- >
- <rect
- className='iBlock'
- id={`${ name }-input-${ inp }`}
- key={i}
- {...loc}
- fill='black'
- />
- <text
- x={loc.x + loc.width}
- y={loc.y + loc.height * 0.75}
- width={varWidth}
- >
- { text }
- </text>
- </g>
- );
- })
- }
- {
- /* outputs
- * draws the inputs (both the black rects for connections and the corresponding input name)
- */
- outputs.map((out, i) => {
- const loc = this.props.locMap.outputs[out];
- // width changes between half the block and the full block depending if theres inputs or not
- const varWidth = hasInputs ? width / 2 : width;
- // the shown text needs to be truncated based on the available space
- // easy to calculate because the text is monospace!
- const maxlen = hasInputs ? 9 : 19;
- // truncate text, add ellipsis if it's too long
- const text = out.length > maxlen ? `${ out.slice(0, maxlen) }…` : out;
- // to align output text to the output blocks (the right side of the block),
- // calculate the x-offset needed, in character count
- const offsetCharacterCount = (hasInputs ? 10 : 20) - text.length;
- // a monospace char @font-size=16px is apparently 10px wide
- const charWidthPx = 10;
- // put it all together, offset 1px to the left to avoid chars overlapping with block border
- const x = ((loc.x - varWidth) + offsetCharacterCount * charWidthPx) - 1;
- return (
- <g
- key={i}
- >
- <rect
- className='oBlock'
- id={`${ name }-output-${ out }`}
- key={i}
- {...loc}
- fill='black'
- />
- <text
- x={x}
- y={loc.y + loc.height * 0.75}
- >
- { text }
- </text>
- </g>
- );
- })
- }
- {/* block errors for the experiment editor */}
- { this.props.errors.length > 0 &&
- <React.Fragment>
- <rect className='errors'
- x={x} y={y} height={height} width={width}
- fill='crimson'
- opacity='0.8'
- stroke='crimson'
- />
- <text
- x={x + width / 2 - 5}
- y={y + 40}
- fontSize={50}
- fill='white'
- >
- !
- </text>
- <text
- x={x + 2}
- y={y + height - 6}
- fill='white'
- fontSize={12}
- >
- { this.props.errors[0] }
- </text>
- </React.Fragment>
- }
- {/* the background rectangle with the click handler */}
- <rect id={blockNameToId(name)} className='fo'
- x={x} y={y} height={height} width={width}
- fill='white'
- opacity={0.0001}
- onClick={e => {
- if(!(e.button === 0 || e.button === undefined))
- return;
- if(e.shiftKey)
- this.props.handleShiftClick(name, this.props.set);
- else
- this.props.handleClick(name, this.props.set);
- e.stopPropagation();
- e.preventDefault();
- }}
- onContextMenu={e => this.props.handleContextMenu && this.props.handleContextMenu(e, this.props.name, this.props.set)}
- >
- <title>
- { name } synchronized to the {this.props.data.synchronized_channel || name} channel
- { this.props.experimentString ? ` with "${ this.props.experimentString }" assigned to it` : ''}
- </title>
- </rect>
- </g>
- );
- }
-}
-
-export default ToolchainBlock;
diff --git a/conda/js/src/components/toolchain/ToolchainConnection.jsx b/conda/js/src/components/toolchain/ToolchainConnection.jsx
deleted file mode 100644
index 400474f961c3570f9f72294cb8225cb19e2f6ff8..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/ToolchainConnection.jsx
+++ /dev/null
@@ -1,134 +0,0 @@
-// @flow
-import * as React from 'react';
-import { ContextMenu, MenuItem, ContextMenuTrigger } from 'react-contextmenu';
-import cn from 'classnames';
-
-import type { BlockCoords, ConnectionType } from '@helpers/toolchainTypes';
-
-type Props = {
- fromLocMap: BlockCoords,
- toLocMap: BlockCoords,
- // provides the location of the ends of the connection
- connection: ConnectionType,
- // the color of the channel the connection is sync'd to
- channelColor: string,
- errors: string[],
- handleContextMenu?: (e: any, ConnectionType) => any,
-};
-
-// gets a unique id for the connection
-export const connectionToId = ({ from, to, channel }: {from: string, to: string, channel: string}) =>
- `${ from.replace('.', '-') }-${ to.replace('.', '-') }`;
-
-class ToolchainConnection extends React.Component<Props> {
- constructor(props: Props){
- super(props);
- }
-
- /*
- * Custom implementation of shouldComponentUpdate for performance reasons!
- * "Why not just use PureComponent??"
- * PureComponent implements a default shouldComponentUpdate that shallowly compares
- * all current & next props/state values.
- * Because the click handlers are always not equal (since they're dynamically generated in the loop in
- * GraphicalEditor.jsx), blocks are *always* rerendered.
- * Also, the locMap objects are technically somehow a different object whenever
- * a subset of the blocks are moved.
- * This means that every block change means rerendering all the blocks.
- * By writing a custom shouldComponentUpdate, we can use more detailed logic that prevents
- * the unnecessary rerenders.
- * A couple things to keep in mind:
- * - the click handlers dont functionally change if the block data doesnt change.
- * - the errors array is a different array every time technically, so check the values
- * - only the positions (x & y) of the locmap data matters
- * - the channel in the connection data can change, but not the to/from
- */
- shouldComponentUpdate(nextProps: Props){
- for(const key in nextProps){
- if(key === 'fromLocMap' || key === 'toLocMap' || key === 'handleContextMenu'){
- continue;
- } else if(key === 'errors'){
- if(nextProps[key].length !== this.props.errors.length)
- return true;
- for(const i in nextProps[key]){
- if(nextProps[key][i] !== this.props[key][i])
- return true;
- }
- } else if(key === 'connection'){
- if(nextProps[key].channel !== this.props[key].channel
- || nextProps[key].from !== this.props[key].from
- || nextProps[key].to !== this.props[key].to
- )
- return true;
- } else if(nextProps[key] !== this.props[key]){
- return true;
- }
- }
-
- const fromLoc = this.props.fromLocMap;
- const toLoc = this.props.toLocMap;
- const fromLocNext = nextProps.fromLocMap;
- const toLocNext = nextProps.toLocMap;
-
- if(fromLoc.x !== fromLocNext.x)
- return true;
- if(fromLoc.y !== fromLocNext.y)
- return true;
- if(toLoc.x !== toLocNext.x)
- return true;
- if(toLoc.y !== toLocNext.y)
- return true;
-
- return false;
- }
-
- render = () => {
- const conn = this.props.connection;
- const connectionId = `${ connectionToId(conn) }`;
- const fromLoc = this.props.fromLocMap;
- const toLoc = this.props.toLocMap;
- //console.log(`connecting "${ connId }" from ${ fromInfo } to ${ toInfo }`);
- //x & y coords for the beginning and end of the connection
-
- /* the right-click menu wraps the actual lines */
- return (
- <g className='tcConnection'
- onContextMenu={e => this.props.handleContextMenu ? this.props.handleContextMenu(e, conn) : {}}
- >
- {/* the first line is almost invisible to widen the space for the mouse events (so its easier for users to do stuff */}
- <line
- id={connectionId}
- stroke={this.props.channelColor}
- strokeOpacity={0.005}
- strokeWidth={10}
- x1={fromLoc.x + 2}
- y1={fromLoc.y + 9}
- x2={toLoc.x + 2}
- y2={toLoc.y + 9}
- >
- <title>
- Connection from {conn.from} to {conn.to} synchronized to the {conn.channel} channel{' '}
- { this.props.errors[0] }
- </title>
- </line>
- {/* the second line is just for show */}
- <line
- className={cn({ error: this.props.errors.length > 0 })}
- stroke={this.props.channelColor}
- strokeWidth={2}
- x1={fromLoc.x + 2}
- y1={fromLoc.y + 6}
- x2={toLoc.x + 2}
- y2={toLoc.y + 6}
- >
- <title>
- Connection from {conn.from} to {conn.to} synchronized to the {conn.channel} channel{' '}
- { (this.props.errors || [])[0] }
- </title>
- </line>
- </g>
- );
- }
-}
-
-export default ToolchainConnection;
diff --git a/conda/js/src/components/toolchain/ToolchainConnection.spec.jsx b/conda/js/src/components/toolchain/ToolchainConnection.spec.jsx
deleted file mode 100644
index 4fca253da1df88e3daf8c7c4d903a6b251d11ec9..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/ToolchainConnection.spec.jsx
+++ /dev/null
@@ -1,117 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import C from './ToolchainConnection.jsx';
-
-describe('<ToolchainConnection />', () => {
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- const testLocMap = {
- block1: {
- inputs: {
- input1: {
- x: 1,
- y: 1,
- width: 0,
- height: 0,
- },
- },
- outputs: {
- output1: {
- x: 5,
- y: 1,
- width: 0,
- height: 0,
- },
- },
- },
- block2: {
- inputs: {
- input2: {
- x: 1,
- y: 6,
- width: 0,
- height: 0,
- },
- },
- outputs: {
- output2: {
- x: 5,
- y: 6,
- width: 0,
- height: 0,
- },
- },
- },
- };
-
- const testConn = {
- from: 'block1.output1',
- to: 'block2.input2',
- channel: 'testChannel',
- };
-
- const testChannelColor = 'pink';
- const fromLocMap = testLocMap.block1.outputs.output1;
- const toLocMap = testLocMap.block2.inputs.input2;
-
- it('accepts the test connection with the right props', () => {
- wrapper = mount(
- <svg width='10' height='10'>
- <C
- fromLocMap={fromLocMap}
- toLocMap={toLocMap}
- connection={testConn}
- channelColor={testChannelColor}
- errors={[]}
- />
- </svg>
- );
- const c = wrapper.children();
-
- expect(c).to.have.props(
- ['fromLocMap', 'toLocMap', 'connection', 'channelColor']
- ).deep.equal(
- [fromLocMap, toLocMap, testConn, testChannelColor]
- );
- });
-
- it('correctly styles the visible line', () => {
- wrapper = mount(
- <svg width='10' height='10'>
- <C
- fromLocMap={fromLocMap}
- toLocMap={toLocMap}
- connection={testConn}
- channelColor={testChannelColor}
- errors={[]}
- />
- </svg>
- );
- const c = wrapper.children().find('line + line');
-
- const expectedProps = {
- stroke: 'pink',
- strokeWidth: 2,
- x1: 5 + 2,
- y1: 1 + 6,
- x2: 1 + 2,
- y2: 6 + 6,
- };
-
- expect(c).to.have.props(
- Object.keys(expectedProps)
- ).deep.equal(
- Object.values(expectedProps)
- );
- });
-});
diff --git a/conda/js/src/components/toolchain/ToolchainEditor.css b/conda/js/src/components/toolchain/ToolchainEditor.css
deleted file mode 100644
index 1926a309e7d0ffcdae11d0ed06e29ea5b927da5c..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/ToolchainEditor.css
+++ /dev/null
@@ -1,18 +0,0 @@
-.toolchainEditor svg {
- cursor: pointer;
-}
-
-.toolchainEditor text:hover {
- clip-path: none;
-}
-
-/* .iBlock:hover, */
-.toolchainEditor .oBlock:hover {
- stroke: black;
- stroke-width: 3;
-}
-
-.toolchainEditor .tcConnection > line:hover + line,
-.toolchainEditor .tcConnection > line + line:hover {
- stroke-width: 5;
-}
diff --git a/conda/js/src/components/toolchain/ToolchainEditor.jsx b/conda/js/src/components/toolchain/ToolchainEditor.jsx
deleted file mode 100644
index 3e32138175c031de7179a3ad0154f4c4a1d35d69..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/ToolchainEditor.jsx
+++ /dev/null
@@ -1,1520 +0,0 @@
-// @flow
-import './ToolchainEditor.css';
-import * as React from 'react';
-import {
- Container,
- Row,
- Col,
- Button,
- ButtonGroup,
- Form,
- FormGroup,
- Label,
- Input,
- InputGroup,
- FormText,
- Collapse,
- Card,
- CardHeader,
- CardBody,
- TabContent, TabPane,
- Navbar,
- Nav, NavItem, NavLink, CardTitle, CardText,
- FormFeedback,
- Alert,
- InputGroupAddon,
- Badge,
-} from 'reactstrap';
-
-import { connect } from 'react-redux';
-import { ContextMenu, MenuItem, ContextMenuTrigger, SubMenu } from 'react-contextmenu';
-
-import { getRandomBrightColor, generateNewKey, copyObj } from '@helpers';
-import {
- getValidToolchainObj as getValidObj,
- nameValidator, nameSegmentsForEntity, getTcFromExpName, getValidAlgorithmObj
-} from '@helpers/beat';
-import type { BeatObject } from '@helpers/beat';
-import { fetchLayout, genModuleApiFuncs } from '@helpers/api';
-import Validate, { VALIDATORS } from '@helpers/schema';
-
-import * as Actions from '@store/actions.js';
-import * as Selectors from '@store/selectors.js';
-import type { FlattenedDatabaseEntry } from '@store/selectors';
-
-import Block from './ToolchainBlock.jsx';
-import type { NormalBlock, AnalyzerBlock, BlockType, ConnectionType, BlockSet, Group, Contents } from '@helpers/toolchainTypes';
-import { connectionToId } from './ToolchainConnection.jsx';
-import ValidSchemaBadge from '../ValidSchemaBadge.jsx';
-import CacheInput from '../CacheInput.jsx';
-import EditModal from './ToolchainModal.jsx';
-import type { ModalCache, ModalAction } from './ToolchainModal.jsx';
-import GraphicalEditor, {
- blockWidth,
- gridDistance,
- convertWorldToDataCoords,
- clampCoordsToGrid,
-} from './GraphicalEditor.jsx';
-import type { Protocol, Set as ProtocolSet } from '../database/DatabaseEditor.jsx';
-import InsertObjectModal from './InsertObjectModal.jsx';
-import RenameGroupModal from './RenameGroupModal.jsx';
-
-type Props = {
- // saved data for the current toolchain
- data: {
- name: string,
- contents: Contents,
- extraContents: {
- groups: Group[]
- },
- },
- // all toolchains
- toolchains: BeatObject[],
- // all databases
- databases: BeatObject[],
- // sets of protocols of databases
- // get protocols for InsertObjectModal
- protocols: any,
- sets: FlattenedDatabaseEntry[],
- normalAlgorithms: BeatObject[],
- analyzerAlgorithms: BeatObject[],
- // func to save changes on the current tc
- saveFunc: (BeatObject) => any,
- updateFunc: (BeatObject) => any,
- // creates an algorithm from block data from the ToolchainModal
- createAlgorithmFromBlock: (data: NormalBlock | AnalyzerBlock, conns: ConnectionType[]) => any,
-};
-
-// represents a timeline of state changes
-// the current state sits between the paste & future states
-// enables very fast redo/undo
-type History = {
- // past states
- past: BeatObject[],
- // future states
- future: BeatObject[],
-};
-
-type State = {
- // info for the modal for editing blocks
- // if the fields are undefined, the modal shouldnt be up
- modalBlockInfo: {
- // navigating to a specific block in the JSON
- // requires a set and a name
- set: ?BlockSet,
- name: ?string,
- active: boolean,
- },
- // the clipboard for copy/pasting blocks
- clipboard?: BlockType[],
- // is the object insertion modal active?
- insertModalActive: boolean,
- // is the modal for renaming groups active?
- renameGroupModalInfo: ?string,
- // the current history for the editor
- history: History,
-};
-
-// generates a new history object whenever the user does an action that changes state
-const generateNewHistory = (state: State, data: any): History => {
- return {
- past: [
- ...state.history.past,
- copyObj(data),
- ],
- future: [],
- };
-};
-
-
-const generateConnectionRepresentations = (connections: ConnectionType[]) => Object.assign({}, ...connections.map(c => ({[`${ c.from }/${ c.to }`]: []})));
-
-// helper func for addBlocks()
-// generates all the new data necessary for a new block,
-// including the representation (location & dimensions),
-// the channel color,
-// and an initial block object
-const generateNewBlockData = (blockName: string, set: BlockSet, x: number, y: number, copyBlock?: ?BlockType) => {
- let newBlock = copyBlock ? { ...copyBlock } : undefined;
- if(newBlock === undefined){
- newBlock = {};
- if(set === 'blocks' || set === 'analyzers'){
- newBlock.inputs = [
- 'input',
- ];
- newBlock.synchronized_channel = '';
- }
- if(set === 'blocks' || set === 'datasets'){
- newBlock.outputs = [
- 'output',
- ];
- }
- }
- newBlock.name = blockName;
-
- const repBlock = {
- col: x,
- row: y,
- height: 3,
- width: blockWidth / gridDistance,
- };
-
- let newChannelColor = set === 'datasets' ? getRandomBrightColor() : null;
-
- return {
- block: newBlock,
- rep: repBlock,
- channelColor: newChannelColor,
- };
-};
-
-// finds a block by name from the three block sub-arrays:
-// blocks (normal blocks), datasets (dataset blocks), analyzers (analyzer blocks)
-const findBlock = (contents: any, name: string): BlockType => {
- const b = contents.blocks.find(b => b.name === name) ||
- contents.datasets.find(b => b.name === name) ||
- contents.analyzers.find(b => b.name === name)
- ;
- if(!b)
- throw new Error(`invalid block name: ${ name }`);
-
- return b;
-};
-
-
-export class ToolchainEditor extends React.PureComponent<Props, State> {
- constructor(props: Props) {
- super(props);
- }
-
- state = {
- modalBlockInfo: {
- name: undefined,
- set: undefined,
- active: false,
- },
- clipboard: undefined,
- insertModalActive: false,
- renameGroupModalInfo: undefined,
- history: {
- past: [],
- future: [],
- },
- }
-
- /* HELPERS */
-
- // helper to set the contents (this.props.data.contents) object
- setContents = (newContents: any) => {
- this.setState((prevState, props) => ({
- history: generateNewHistory(prevState, props.data),
- }));
-
- this.props.updateFunc({
- ...this.props.data,
- contents: {
- ...this.props.data.contents,
- ...newContents,
- }
- });
- }
-
- // helper to set the groups (this.props.data.extraContents.groups)
- setGroups = (groups: Group[]) => {
- this.setState((prevState, props) => ({
- history: generateNewHistory(prevState, props.data),
- }));
-
- this.props.updateFunc({
- ...this.props.data,
- extraContents: {
- ...this.props.data.extraContents,
- groups,
- }
- });
- }
-
- // finds a block by name from the three block sub-arrays:
- // blocks (normal blocks), datasets (dataset blocks), analyzers (analyzer blocks)
- findBlock = (name: string): BlockType => findBlock(this.props.data.contents, name);
-
- // gets possible channels the block can sync to
- getPossibleChannels = (blockName: string) => {
- const relConns = this.props.data.contents.connections.filter(c => c.to.split('.')[0] === blockName) || [];
- const possibleChannels = Array.from(new Set(relConns.map(c => c.channel)))
- .reduce((o, channel) => ({...o, [channel]: this.props.data.contents.representation.channel_colors[channel]}), {});
-
- return possibleChannels;
- }
-
- /* HISTORY */
-
- // undoes history by saving the current state to the future
- // and switching to the latest history state
- undoHistory = () => {
- if(this.state.history.past.length === 0)
- return this.state;
-
- const newPast = [...this.state.history.past];
- const newData = newPast.pop();
-
- const newFuture = [...this.state.history.future, copyObj(this.props.data)];
- this.setState({
- history: {
- past: newPast,
- future: newFuture,
- },
- });
-
- if(!newData){
- console.error(`No past state found!`);
- return;
- }
-
- this.props.updateFunc(newData);
- };
-
- // redoes history by putting the current state in the past
- // and switching to the earliest future state
- redoHistory = () => {
- if(this.state.history.future.length === 0)
- return this.state;
-
- const newFuture = [...this.state.history.future];
- const newData = newFuture.pop();
-
- const newPast = [...this.state.history.past, copyObj(this.props.data)];
- this.setState({
- history: {
- past: newPast,
- future: newFuture,
- },
- });
-
- if(!newData){
- console.error(`No future state found!`);
- return;
- }
-
- this.props.updateFunc(newData);
- };
-
- /* MODALS */
-
- // toggles whether the object insert modal is active or not
- toggleInsertModal = () => {
- this.setState((prevState) => ({ insertModalActive: !prevState.insertModalActive }));
- }
-
- // toggles whether the group rename modal is active or not
- toggleRenameGroupModal = (val: ?string) => {
- this.setState((prevState) => ({ renameGroupModalInfo: val }));
- }
-
- closeEditModal = () => {
- this.setState({
- modalBlockInfo: {
- ...this.state.modalBlockInfo,
- active: false,
- }
- });
- }
-
- /* GROUPS */
-
- // renames a group from an old name to a new one
- renameGroup = (oldName: string, newName: string) => {
- this.setGroups(this.props.data.extraContents.groups.map(g => g.name === oldName ? {...g, name: newName} : g));
- }
-
- /* CONNECTIONS */
-
- // creates a connection between a block's output and a block's input with a specific channel
- createConnections = (connectionData: ConnectionType[]) => {
- const rep = this.props.data.contents.representation;
-
- // assign empty synchronized_channel vals on blocks that are getting their first connection
- const toBlockNamesAndChannels = connectionData.map(c => [c.to.split('.')[0], c.channel]);
- const assignBlockChannels = (blocks: BlockType[]) => {
- return blocks.map(b => {
- if(this.props.data.contents.connections.find(c => c.to.startsWith(`${ b.name }.`)) && b.synchronized_channel !== '')
- return b;
- const tbnc = toBlockNamesAndChannels.find(([n, c]) => n === b.name);
- if(!tbnc)
- return b;
- return {
- ...b,
- synchronized_channel: tbnc[1],
- };
- })
- ;
- };
-
- const newBlocks = assignBlockChannels(this.props.data.contents.blocks);
- const newAnalyzers = assignBlockChannels(this.props.data.contents.analyzers);
-
-
- const newRepConns = generateConnectionRepresentations(connectionData);
- this.setContents({
- blocks: newBlocks,
- analyzers: newAnalyzers,
- connections: [
- ...this.props.data.contents.connections,
- ...connectionData,
- ],
- representation: {
- ...rep,
- connections: {
- ...rep.connections,
- ...newRepConns,
- }
- }
- });
- }
-
- // deletes a connection
- // looks at the representation object and the connections array
- deleteConnection = (cn: ConnectionType) => {
- const rep = {...this.props.data.contents.representation};
-
- rep.connections = Object.entries(rep.connections).filter(([name, rep]) => {
- const [from, to] = name.split('/');
- if(from === cn.from && to === cn.to)
- return false;
- return true;
- })
- .reduce((cs, [name, rep]) => ({...cs, [name]: rep}), {})
- ;
-
- const newConns = this.props.data.contents.connections.filter(c => {
- if(c.from === cn.from && c.to === cn.to)
- return false;
- return true;
- });
-
- // if the given block has no conns to it, the syncd channel should become ''
- const removeInvalidChannels = (b: NormalBlock | AnalyzerBlock): NormalBlock | AnalyzerBlock => {
- if(newConns.find(c => c.to.split('.')[0] == b.name))
- return b;
-
- return {
- ...b,
- synchronized_channel: '',
- };
- };
-
- const newContents = {
- connections: newConns,
- blocks: this.props.data.contents.blocks.map(b => removeInvalidChannels(b)),
- analyzers: this.props.data.contents.analyzers.map(b => removeInvalidChannels(b)),
- representation: rep,
- };
-
- this.setContents(newContents);
- }
-
- /* BLOCKS */
-
- // adds new blocks at a certain location via an array of arrays of info about the new block(s)
- // it will also copy connections via looking for connections between copied blocks and copying them to the related new blocks
- // Parameters:
- // blockData: each array is info about a new block:
- // - the first string is the new name
- // - the BlockSet is the set to put the block in
- // - the numbers are the x & y coords of the new block
- // - last entry is an optional block object to copy from
- // connections:
- // if you are inserting blocks from different toolchains, give the new connections as the second arg!
- // these new connections should already be updated to have the new syncd channel names
- addBlocks = (blockData: [string, BlockSet, number, number, ?BlockType][], connections: ConnectionType[]) => {
- const newBlocks = blockData.map(d => generateNewBlockData(...d));
- const sets = blockData.map(b => b[1]);
-
- const rep = {
- ...this.props.data.contents.representation,
- blocks: {
- ...this.props.data.contents.representation.blocks,
- ...newBlocks.reduce((newReps, b) => ({...newReps, [b.block.name]: b.rep}), {}),
- },
- channel_colors: {
- ...this.props.data.contents.representation.channel_colors,
- ...newBlocks.filter(b => b.channelColor !== null)
- .reduce((newColors, b) => ({...newColors, [b.block.name]: b.channelColor}), {}),
- }
- };
-
-
- const newContents = {
- blocks: [...this.props.data.contents.blocks, ...newBlocks.filter((b, i) => sets[i] === 'blocks').map(b => b.block)],
- datasets: [...this.props.data.contents.datasets, ...newBlocks.filter((b, i) => sets[i] === 'datasets').map(b => b.block)],
- analyzers: [...this.props.data.contents.analyzers, ...newBlocks.filter((b, i) => sets[i] === 'analyzers').map(b => b.block)],
- representation: rep,
- connections: this.props.data.contents.connections,
- };
-
- // if the blocks werent copied from an external toolchain,
- // check for connection info from the copied blocks and create new connections between the new blocks
- if(!connections){
- const copyBlocks = blockData.filter(bd => bd.length > 4);
- const newConnections: ConnectionType[] = [...this.props.data.contents.connections].map(({ from, to, channel }) => {
- const fromBlock = copyBlocks.find(bd => from.startsWith(`${ bd[4].name }.`));
- const toBlock = copyBlocks.find(bd => to.startsWith(`${ bd[4].name }.`));
- if(!fromBlock || !toBlock)
- return false;
- const newFromBlockData = newBlocks.find(b => b.block.name === fromBlock[0]);
- if(!newFromBlockData)
- return false;
- else {
- return {
- from: from.replace(`${ fromBlock[4].name }.`, `${ fromBlock[0] }.`),
- to: to.replace(`${ toBlock[4].name }.`, `${ toBlock[0] }.`),
- channel: newFromBlockData.block.synchronized_channel || newFromBlockData.block.name,
- };
- }
- })
- .filter(c => c);
- newContents.connections = [...this.props.data.contents.connections, ...newConnections];
- const newRepConns = generateConnectionRepresentations(newConnections);
- newContents.representation.connections = {...rep.connections, ...newRepConns};
- } else {
- // add the new connections from the copied toolchain
- const newConnections = connections;
- newContents.connections = [...this.props.data.contents.connections, ...newConnections];
- const newRepConns = generateConnectionRepresentations(newConnections);
- newContents.representation.connections = {...rep.connections, ...newRepConns};
- }
-
- this.setContents(newContents);
- }
-
- // updates a blocks location in the graphical editor by providing an x & y offset relative to the current location.
- updateBlockLocations = (bLocs: {blockName: string, x: number, y: number}[]) => {
- const rep = this.props.data.contents.representation;
- const newReps = bLocs
- .map(bLoc => ({ [bLoc.blockName]: { ...rep.blocks[bLoc.blockName], col: bLoc.x, row: bLoc.y }}))
- .reduce((o, bLoc) => ({ ...o, ...bLoc }), {});;
- this.setContents({
- representation: {
- ...rep,
- blocks: {
- ...rep.blocks,
- ...newReps,
- }
- }
- });
- }
-
- // deletes a block from the toolchain,
- // as well as any connections to/from it
- // if it was the sole member of a group, deletes the group too
- deleteBlocks = (names: string[]) => {
- const rep = copyObj(this.props.data.contents.representation);
-
- names.forEach(name => {
- delete rep.blocks[name];
- delete rep.channel_colors[name];
- });
-
- rep.connections = Object.entries(rep.connections).filter(([name, rep]) => {
- const [from, to] = name.split('/');
- if(names.find(blockName => to.startsWith(`${ blockName }.`) || from.startsWith(`${ blockName }.`)))
- return false;
- return true;
- })
- .reduce((cs, [name, r]) => ({...cs, [name]: r}), {})
- ;
-
- const newContents = {
- ...this.props.data.contents,
- blocks: this.props.data.contents.blocks.filter(s => !names.includes(s.name)),
- datasets: this.props.data.contents.datasets.filter(s => !names.includes(s.name)),
- analyzers: this.props.data.contents.analyzers.filter(s => !names.includes(s.name)),
- connections: this.props.data.contents.connections.filter(c => {
- if(names.find(blockName => c.to.startsWith(`${ blockName }.`) || c.from.startsWith(`${ blockName }.`)))
- return false;
- return true;
- }),
- representation: rep,
- };
-
- const newGroups = this.props.data.extraContents.groups
- .map(({ name, blocks }) => ({ name, blocks: blocks.filter(n => !names.includes(n)) }))
- .filter(g => g.blocks.length !== 0);
-
- this.setState({
- history: generateNewHistory(this.state, this.props.data),
- });
-
- this.props.updateFunc({
- ...this.props.data,
- contents: newContents,
- extraContents: {
- ...this.props.data.extraContents,
- groups: newGroups,
- },
- });
- }
-
- /* BLOCK EDIT MODAL */
-
- // updates the block data for a given block
- // by sequentially applying all updates made from the ToolchainModal editor
- // to the data of the toolchain.
- updateBlockData = (data: ModalCache) => {
- const set = this.state.modalBlockInfo.set;
- const name = this.state.modalBlockInfo.name;
- if(!set || !name){
- console.error(`Modal not open for update for ${ data.name }`);
- return;
- }
-
- const oldData = this.props.data;
- const oldBlock = oldData.contents[set].find(b => b.name === name);
- if(!oldBlock){
- console.error(`cannot find block ${ name }`);
- return;
- }
-
- let newData = copyObj(oldData);
-
- // update name
- if(name !== data.name) {
- newData = this.updateBlockNameFunc(newData, set, name, data.name);
- }
-
- // update channel
- if(data.synchronized_channel && oldBlock.synchronized_channel !== data.synchronized_channel){
- newData = this.updateBlockChannelFunc(newData, data.name, set, data.synchronized_channel);
- }
-
- const findNewBlock = () => newData.contents[set].find(b => b.name === data.name);
- let newBlock = findNewBlock();
-
- // update inputs
- if(Array.isArray(data.inputs)){
- // first change names
- // when the modal opens,
- // a new "change" operation is added to the cache
- // for each input/output already in the block, with a name === original
- // to avoid extra processing, skip these if they exist
- const [oldNames, newNames] = data.inputs.filter(o => o.action === 'change' && o.original !== o.name)
- .reduce(([oldNames, newNames], o) => [[...oldNames, o.original], [...newNames, o.name]], [[], []]);
-
- newData = this.updateBlockIONamesFunc(newData, newBlock.name, set, 'input', oldNames, newNames);
- newBlock = findNewBlock();
-
- data.inputs.filter(o => o.action !== 'change')
- .forEach(o => {
- switch(o.action){
- case 'delete':
- newData = this.deleteBlockIOFunc(newData, newBlock.name, set, 'input', o.original);
- break;
- case 'add':
- newData = this.addBlockIOFunc(newData, newBlock.name, set, 'input', o.name);
- break;
- default:
- break;
- }
- newBlock = findNewBlock();
- });
- }
-
- // update outputs
- if(Array.isArray(data.outputs)){
- const [oldNames, newNames] = data.outputs.filter(o => o.action === 'change' && o.original !== o.name)
- .reduce(([oldNames, newNames], o) => [[...oldNames, o.original], [...newNames, o.name]], [[], []]);
-
- newData = this.updateBlockIONamesFunc(newData, newBlock.name, set, 'output', oldNames, newNames);
- newBlock = findNewBlock();
-
- data.outputs.filter(o => o.action !== 'change')
- .forEach(o => {
- switch(o.action){
- case 'delete':
- newData = this.deleteBlockIOFunc(newData, newBlock.name, set, 'output', o.original);
- break;
- case 'add':
- newData = this.addBlockIOFunc(newData, newBlock.name, set, 'output', o.name);
- break;
- default:
- break;
- }
- newBlock = findNewBlock();
- });
- }
-
- this.setState((prevState, props) => ({
- history: generateNewHistory(prevState, props.data),
- }));
-
- this.props.updateFunc(newData);
- }
-
- // changes a block's name given the set it belongs to, the old name, and the new name
- updateBlockNameFunc = (oldData: any, set: BlockSet, oldName: string, newName: string): any => {
- // func to update from/to strings with old names to new names
- const updateConn = (from, to): string[] => {
- const fromSplit = from.split('.');
- fromSplit[0] = fromSplit[0] === oldName ? newName : fromSplit[0];
- const toSplit = to.split('.');
- toSplit[0] = toSplit[0] === oldName ? newName : toSplit[0];
- return [fromSplit.join('.'), toSplit.join('.')];
- };
-
- // update the block & conn representation with the new names
- const rep = {...oldData.contents.representation};
- rep.blocks = {...rep.blocks};
- rep.blocks[newName] = rep.blocks[oldName];
- delete rep.blocks[oldName];
- rep.connections = Object.entries(rep.connections).map(([name, rep]) => {
- if(!name.includes(oldName))
- return [name, rep];
-
- const [from, to] = name.split('/');
- const updated = updateConn(from, to);
-
- return [updated.join('/'), rep];
- })
- .reduce((cs, c) => ({...cs, [c[0]]: c[1]}), {})
- ;
- // update the channel colors
- if(set === 'datasets'){
- rep.channel_colors[newName] = rep.channel_colors[oldName];
- delete rep.channel_colors[oldName];
- }
-
- // update blocks & connections
- const newContents = {
- ...oldData.contents,
- [set]: oldData.contents[set].map(s => s.name === oldName ? {...s, name: newName} : s),
- // update the conns, both the names of the blocks and the channel
- connections: oldData.contents.connections.map(c => {
- if(!c.from.includes(oldName) && !c.to.includes(oldName) && c.channel !== oldName)
- return c;
-
- const newChannel = c.channel === oldName ? newName : c.channel;
-
- const updated = updateConn(c.from, c.to);
- return {
- channel: newChannel,
- from: updated[0],
- to: updated[1],
- };
- }),
- representation: rep,
- };
-
- // if the changed block is a dataset, update the synchronized_channel on all blocks using its old name
- if(set === 'datasets'){
- newContents['blocks'] = oldData.contents.blocks
- .map(s => s.synchronized_channel === oldName ? {...s, synchronized_channel: newName} : s)
- ;
-
- newContents['analyzers'] = oldData.contents.analyzers
- .map(s => s.synchronized_channel === oldName ? {...s, synchronized_channel: newName} : s)
- ;
- }
-
- const newGroups = oldData.extraContents.groups
- .map(({ name, blocks }) => ({ name, blocks: blocks.map(n => n === oldName ? newName : n) }));
- this.setState((prevState, props) => ({
- history: generateNewHistory(prevState, props.data),
- modalBlockInfo: {
- active: true,
- name: newName,
- set
- }
- }));
-
- return {
- ...oldData,
- contents: newContents,
- extraContents: {
- ...oldData.extraContents,
- groups: newGroups,
- },
- };
- }
-
- // update multiple block names at once
- updateBlockIONamesFunc = (oldData: any, blockName: string, set: BlockSet, ioType: 'input' | 'output', oldNames: string[], newNames: string[]) => {
- const combinedNames = oldNames.map(oldName => `${ blockName }.${ oldName }`);
- // gets the new name for the i/o from the old name OR from the old combined name (in the form `${blockName}.${oldName}`)
- const getNewFromOld = (oldName: string): ?string => {
- const foundCombined = combinedNames.findIndex(cn => cn === oldName);
- const found = oldNames.findIndex(o => o === oldName);
- if(foundCombined > -1){
- return newNames[foundCombined];
- } else if(found > -1){
- return newNames[found];
- } else {
- return undefined;
- }
- };
-
- // updates a connection to use the new names
- const updateConn = (from, to): string[] => {
- const fromSplit = from.split('.');
- const toSplit = to.split('.');
-
- if(ioType === 'output')
- fromSplit[1] = getNewFromOld(from) || fromSplit[1];
- else if(ioType === 'input')
- toSplit[1] = getNewFromOld(to) || toSplit[1];
-
- return [fromSplit.join('.'), toSplit.join('.')];
- };
-
- const rep = {...oldData.contents.representation};
- // fix all the names in `contents.representation.connections`
- const newRepConns = Object.entries(rep.connections).map(([name, crep]) => {
- if(!oldNames.some(oldName => name.includes(`.${ oldName }`)))
- return [name, crep];
-
- const [from, to] = name.split('/');
- const updated = updateConn(from, to);
-
- return [updated.join('/'), crep];
- })
- .reduce((cs, [name, crep]) => ({...cs, [name]: crep}), {})
- ;
-
- // fix all the connection objects in `contents.connections`
- const newConns = oldData.contents.connections.map(c => {
- const updated = updateConn(c.from, c.to);
- return {
- ...c,
- from: updated[0],
- to: updated[1],
- };
- });
-
- const newContents = {
- ...oldData.contents,
- [set]: oldData.contents[set].map(s => {
- if(s.name !== blockName)
- return s;
- const newBlock = {
- ...s,
- };
- if(ioType === 'input')
- newBlock.inputs = newBlock.inputs.map(str => getNewFromOld(str) || str);
- if(ioType === 'output')
- newBlock.outputs = newBlock.outputs.map(str => getNewFromOld(str) || str);
- return newBlock;
- }),
- connections: newConns,
- representation: {
- ...rep,
- connections: newRepConns,
- },
- };
-
- return {
- ...oldData,
- contents: newContents,
- };
- }
-
- // add a new input or output to a block
- addBlockIOFunc = (oldData: any, blockName: string, set: BlockSet, ioType: 'input' | 'output', newName: string) => {
- const newContents = {
- ...oldData.contents,
- [set]: oldData.contents[set].map(s => {
- if(s.name !== blockName)
- return s;
- const newBlock = {
- ...s,
- };
- if(ioType === 'input')
- newBlock.inputs = [...newBlock.inputs, newName];
- if(ioType === 'output')
- newBlock.outputs = [...newBlock.outputs, newName];
- return newBlock;
- }),
- };
-
- return {
- ...oldData,
- contents: newContents,
- };
- }
-
- // deletes an input or output from a block,
- // as well as any connections connected to it
- deleteBlockIOFunc = (oldData: any, blockName: string, set: BlockSet, ioType: 'input' | 'output', ioName: string) => {
- const rep = {...oldData.contents.representation};
-
- const connectionLabel = `${ blockName }.${ ioName }`;
-
- rep.connections = Object.entries(rep.connections).filter(([name, rep]) => {
- if(!name.includes(ioName))
- return true;
-
- const [from, to] = name.split('/');
- if(ioType === 'input' && to === connectionLabel)
- return false;
- if(ioType === 'output' && from === connectionLabel)
- return false;
- return true;
- })
- .reduce((cs, [name, rep]) => ({...cs, [name]: rep}), {})
- ;
- const newContents = {
- ...oldData.contents,
- [set]: oldData.contents[set].map(s => {
- if(s.name !== blockName)
- return s;
- const newBlock = {
- ...s,
- };
- if(ioType === 'input')
- newBlock.inputs = newBlock.inputs.filter(str => str !== ioName);
- if(ioType === 'output')
- newBlock.outputs = newBlock.outputs.filter(str => str !== ioName);
- return newBlock;
- }),
- connections: oldData.contents.connections.filter(c => {
- if(ioType === 'input' && c.to === connectionLabel)
- return false;
- if(ioType === 'output' && c.from === connectionLabel)
- return false;
- return true;
- }),
- };
-
- return {
- ...oldData,
- contents: newContents,
- };
- }
-
- // changes the block's sync'd channel
- // also updates all connections from the block
- updateBlockChannelFunc = (oldData: any, blockName: string, set: BlockSet, channel: string) => {
- const queue = [oldData.contents[set].find(b => b.name === blockName)];
- const oldChannel = `${ queue[0].synchronized_channel }`;
- const bNames = Object.keys(oldData.contents.representation.blocks);
- const conns = oldData.contents.connections;
- const updatedBlocks: { [string]: BlockType } = {};
- const updatedConnections: { [string]: ConnectionType } = {};
- while(queue.length > 0){
- const b = queue.shift();
- if(b.synchronized_channel === oldChannel){
- updatedBlocks[b.name] = {
- ...b,
- synchronized_channel: channel,
- };
-
- conns
- .filter(c => c.from.startsWith(`${ b.name }.`))
- .forEach(c => {
- const curr = c.to.split('.')[0];
- // if theres more than one connection to this block
- // that is synced to the old channel,
- // dont change the channel of this block
- // because the old channel is still valid
- if(
- conns
- .filter(c => c.to.startsWith(`${ curr }.`) && c.channel === oldChannel)
- .length === 1
- )
- queue.push(findBlock(oldData.contents, curr));
-
- updatedConnections[connectionToId(c)] = {
- ...c,
- channel,
- };
- });
- }
- }
-
- const newContents = {
- ...oldData.contents,
- datasets: oldData.contents.datasets.map(b => updatedBlocks[b.name] || b),
- blocks: oldData.contents.blocks.map(b => updatedBlocks[b.name] || b),
- analyzers: oldData.contents.analyzers.map(b => updatedBlocks[b.name] || b),
- connections: oldData.contents.connections.map(c => updatedConnections[connectionToId(c)] || c),
- };
-
- return {
- ...oldData,
- contents: newContents,
- };
- }
-
- createAlgorithmFromBlock = async (algName: string) => {
- const {active, name, set} = this.state.modalBlockInfo;
- const data = this.props.data.contents[set].find(b => b.name === name);
-
- if(!data){
- console.error(`cannot find ${ name } to create ${ algName } in blocks or analyzers`);
- return;
- }
-
- const conns = this.props.data.contents.connections
- .filter(c => c.to.startsWith(`${ name }.`))
- ;
-
- await this.props.createAlgorithmFromBlock({ ...data, name: algName }, conns);
- }
-
- /* CONTEXT MENUS */
-
- svgContextMenuLocation: ?[number, number] = undefined
-
- // handles the left click on the svg's background
- // shows a menu to add/paste blocks at the click location
- handleSvgContextMenu = (e: any, data: { x: number, y: number, selectBlocks: (string[]) => any, clicked: string }) => {
- const {blocks, datasets, analyzers, representation} = this.props.data.contents;
- const { x, y, selectBlocks, clicked } = data;
- let newBlockName = '';
- const usedNames = this.getUsedNames();
- switch(clicked){
- case 'addBlock':
- newBlockName = generateNewKey('block', usedNames);
- this.addBlocks([[newBlockName, 'blocks', x, y]]);
- break;
- case 'addDataset':
- newBlockName = generateNewKey('dataset', usedNames);
- this.addBlocks([[newBlockName, 'datasets', x, y]]);
- break;
- case 'addAnalyzer':
- newBlockName = generateNewKey('analyzer', usedNames);
- this.addBlocks([[newBlockName, 'analyzers', x, y]]);
- break;
- case 'addObject':
- this.svgContextMenuLocation = [x, y];
- this.toggleInsertModal();
- break;
- case 'paste':
- if(!this.state.clipboard || this.state.clipboard.length === 0)
- return;
- const blocksToCopy = this.state.clipboard;
-
- const sets = blocksToCopy.map(b => {
- if(!b.hasOwnProperty('inputs'))
- return 'datasets';
- if(!b.hasOwnProperty('outputs'))
- return 'analyzers';
- return 'blocks';
- });
- //first element in the blocksToCopy array is the one used to offset the other blocks
- const b0 = blocksToCopy[0];
- const b0Rep = representation.blocks[b0.name];
- const offsetX = x - b0Rep.col;
- const offsetY = y - b0Rep.row;
- const newBlockData = blocksToCopy.map((b, i, bs) => {
- const bRep = representation.blocks[b.name];
- const set = sets[i];
- const newX = bRep.col + offsetX;
- const newY = bRep.row + offsetY;
- const newName = generateNewKey(b.name, usedNames);
- return [newName, set, newX, newY, {...b}];
- });
- this.addBlocks(newBlockData);
- selectBlocks(newBlockData.map(d => d[0]));
- break;
- default:
- break;
- }
- }
-
- // copy either a block or array of blocks to the clipboard
- copyToClipboard = (data: any[]) => {
- this.setState({
- clipboard: data,
- });
- }
-
- // handles a right click on a block
- handleBlockContextMenu = (e: any, data: { name: string, clicked: string }) => {
- const {name, clicked} = data;
- switch(clicked){
- case 'delete':
- this.deleteBlocks([name]);
- break;
- case 'copy':
- this.copyToClipboard([this.findBlock(name)]);
- break;
- default:
- break;
- }
- }
-
- // handles a right click on a connection
- handleConnectionContextMenu = (e: any, data: { connection: ConnectionType, clicked: string }) => {
- const {connection, clicked} = data;
- switch(clicked){
- case 'delete':
- this.deleteConnection(connection);
- break;
- default:
- break;
- }
- }
-
- // handles a right click on a group
- handleGroupContextMenu = (e: any, data: { group: string, selectBlocks: (BlockType[]) => any, clicked: string }) => {
- const {group, clicked, selectBlocks} = data;
- const groups = this.props.data.extraContents.groups;
- const g = groups.find(g => g.name === group);
- switch(clicked){
- case 'delete':
- this.setGroups(groups.filter(g => g.name !== group));
- break;
- case 'copy':
- this.copyToClipboard(g.blocks.map(b => this.findBlock(b)).filter(b => b));
- break;
- case 'select':
- selectBlocks(g.blocks.map(b => this.findBlock(b)).filter(b => b));
- break;
- case 'collapse':
- this.setGroups(groups.map(g => g.name === group ? { ...g, collapsed: !g.collapsed } : g));
- break;
- case 'rename':
- this.toggleRenameGroupModal(group);
- break;
- default:
- break;
- }
- }
-
- // gets all the used names in the toolchain:
- // group names & block names
- getUsedNames = (): string[] => [
- ...this.props.data.extraContents.groups.map(g => g.name),
- ...Object.keys(this.props.data.contents.representation.blocks)
- ];
-
- // handles a right click on an area selection
- handleAreaSelectContextMenu = (e: any, data: { selection: BlockType[], clicked: string }) => {
- const {selection, clicked} = data;
- const groups = this.props.data.extraContents.groups;
- switch(clicked){
- case 'createGroup':
- const newGroupName = generateNewKey('group', this.getUsedNames());
- this.setGroups([
- ...groups,
- {
- name: newGroupName,
- blocks: selection.map(b => b.name),
- collapsed: false,
- }
- ]);
- break;
- case 'copy':
- this.copyToClipboard(selection);
- break;
- case 'delete':
- this.deleteBlocks(selection.map(b => b.name));
- break;
- default:
- break;
- }
- }
-
- lastClickBlockName = ''
- lastClickMs = 0
- // handles left clicking on a block
- handleBlockClick = (blockName: string, set: BlockSet) => {
- const currTime = Date.now();
- // 1sec throttling
- const delay = 1000;
- if(currTime - this.lastClickMs > delay || blockName !== this.lastClickBlockName){
- this.lastClickBlockName = blockName;
- const newMBI = {
- set,
- name: blockName,
- active: true,
- };
- this.setState({
- modalBlockInfo: newMBI,
- });
- }
- this.lastClickBlockName = blockName;
- this.lastClickMs = currTime;
- }
-
- // uses the server's /layout endpoint to get a graphviz layout for this toolchain
- autoLayout = async () => {
- // first save the tc to the BEAT prefix
- const serverSaveFunc = genModuleApiFuncs('toolchain').put;
- await serverSaveFunc(this.props.data);
- // then fetch the new layout
- const json = await fetchLayout(this.props.data.name);
-
- // transform the received layout into objs for updateBlockLocations
- const posRaw = json.objects
- .filter(o => o.hasOwnProperty('pos'))
- .map(o => {
- const [x, y] = o.pos.split(',').map(n => Number.parseFloat(n));
- return {
- blockName: o.name,
- x,
- y,
- };
- })
- ;
-
- // flip the blocks' y-coord across the middle of the layout
- // because graphviz's y-axis starts at the bottom while svg
- // starts at the top
- const midY = Math.max(...posRaw.map(o => o.y)) / 2;
- const pos = posRaw.map(({blockName, x, y}) => {
- const ry = y - (2 * (y - midY));
- return {
- blockName,
- // round to the nearest grid lines
- x: Math.round(x / gridDistance),
- y: Math.round(ry / gridDistance),
- };
- });
-
- // update locations
- this.updateBlockLocations(pos);
- // dont save locally because it kills the undo/redo stack!
- }
-
- renderGraphicalEditor = () => {
- return (
- <Container>
- <Row>
- </Row>
- <Row>
- <GraphicalEditor
- interactable
- repData={this.props.data.contents.representation}
- blocks={this.props.data.contents.blocks}
- datasets={this.props.data.contents.datasets}
- analyzers={this.props.data.contents.analyzers}
- connections={this.props.data.contents.connections}
- groups={this.props.data.extraContents.groups}
- handleBlockClick={this.handleBlockClick}
- updateBlockLocations={this.updateBlockLocations}
- createConnection={(from: string, to: string, channel: string) => this.createConnections([{ from, to, channel }])}
- toolbarContent={
- <React.Fragment>
- <Button
- size='sm'
- onClick={this.undoHistory}
- disabled={this.state.history.past.length === 0}
- >
- Undo
- </Button>
- <Button
- size='sm'
- onClick={this.redoHistory}
- disabled={this.state.history.future.length === 0}
- >
- Redo
- </Button>
- <Button
- size='sm'
- onClick={this.autoLayout}
- title={'This will use Graphviz to generate a more visually understandable layout for your toolchain.'}
- disabled={!!Validate(VALIDATORS['toolchain'], this.props.data)}
- >
- Layout
- </Button>
- </React.Fragment>
- }
- divChildren={
- <React.Fragment>
- <ContextMenu
- id='blockContextMenu'
- hideOnLeave={true}
- >
- <MenuItem
- data={{ clicked: 'delete'}}
- onClick={this.handleBlockContextMenu}
- >
- Delete Block
- </MenuItem>
- <MenuItem
- data={{ clicked: 'copy'}}
- onClick={this.handleBlockContextMenu}
- >
- Copy Block
- </MenuItem>
- </ContextMenu>
- <ContextMenu
- id='connectionContextMenu'
- hideOnLeave={true}
- >
- <MenuItem
- data={{ clicked: 'delete'}}
- onClick={this.handleConnectionContextMenu}
- >
- Delete Connection
- </MenuItem>
- </ContextMenu>
- <ContextMenu
- id='svgContextMenu'
- hideOnLeave={true}
- >
- {
- this.state.clipboard !== undefined &&
- <MenuItem
- data={{ clicked: 'paste'}}
- onClick={this.handleSvgContextMenu}
- >
- Paste Here
- </MenuItem>
- }
- <MenuItem
- data={{ clicked: 'addBlock'}}
- onClick={this.handleSvgContextMenu}
- >
- Add Block Here
- </MenuItem>
- <MenuItem
- data={{ clicked: 'addDataset'}}
- onClick={this.handleSvgContextMenu}
- >
- Add Dataset Here
- </MenuItem>
- <MenuItem
- data={{ clicked: 'addAnalyzer'}}
- onClick={this.handleSvgContextMenu}
- >
- Add Analyzer Here
- </MenuItem>
- <MenuItem
- data={{ clicked: 'addObject'}}
- onClick={this.handleSvgContextMenu}
- >
- Insert Object Here
- </MenuItem>
- </ContextMenu>
- <ContextMenu
- id='groupContextMenu'
- hideOnLeave={true}
- >
- <MenuItem
- data={{ clicked: 'copy'}}
- onClick={this.handleGroupContextMenu}
- >
- Copy Group Blocks
- </MenuItem>
- <MenuItem
- data={{ clicked: 'select'}}
- onClick={this.handleGroupContextMenu}
- >
- Select Group Blocks
- </MenuItem>
- <MenuItem
- data={{ clicked: 'collapse'}}
- onClick={this.handleGroupContextMenu}
- >
- Toggle Collapsed
- </MenuItem>
- <MenuItem
- data={{ clicked: 'rename'}}
- onClick={this.handleGroupContextMenu}
- >
- Rename
- </MenuItem>
- <MenuItem
- data={{ clicked: 'delete'}}
- onClick={this.handleGroupContextMenu}
- >
- Delete Group
- </MenuItem>
- </ContextMenu>
- <ContextMenu
- id='areaSelectContextMenu'
- hideOnLeave={true}
- >
- <MenuItem
- data={{ clicked: 'copy'}}
- onClick={this.handleAreaSelectContextMenu}
- >
- Copy Blocks
- </MenuItem>
- <MenuItem
- data={{ clicked: 'createGroup'}}
- onClick={this.handleAreaSelectContextMenu}
- >
- Create Group
- </MenuItem>
- <MenuItem
- data={{ clicked: 'delete'}}
- onClick={this.handleAreaSelectContextMenu}
- >
- Delete Blocks
- </MenuItem>
- </ContextMenu>
- </React.Fragment>
- }
- >
- </GraphicalEditor>
- </Row>
- </Container>
- );
- }
-
- // modal that pops up when left clicking a block
- renderEditModal = () => {
- const {active, name, set} = this.state.modalBlockInfo;
- if(!name || !set)
- return null;
- const possibleChannels = active ? this.getPossibleChannels(name) : {};
- return (
- <EditModal
- data={this.props.data.contents[set].find(d => d.name === name)}
- active={active}
- toggle={() => this.closeEditModal()}
- blockNames={Object.keys(this.props.data.contents.representation.blocks) || []}
- deleteBlock={() => this.deleteBlocks([name])}
- possibleChannels={possibleChannels}
- updateBlockData={this.updateBlockData}
- createAlgorithmFromBlock={this.createAlgorithmFromBlock}
- />
- );
- }
-
- renderInsertModal = () => {
- return (
- <InsertObjectModal
- toolchains={this.props.toolchains}
- protocols={this.props.protocols}
- sets={this.props.sets}
- normalAlgorithms={this.props.normalAlgorithms}
- analyzerAlgorithms={this.props.analyzerAlgorithms}
- active={this.state.insertModalActive}
- toggle={this.toggleInsertModal}
- addNewBlocks={(type, newBlocksData, newConnections) => {
- if(!this.svgContextMenuLocation)
- return;
- const [x, y] = this.svgContextMenuLocation;
- for(const b of newBlocksData){
- b[2] += x;
- b[3] += y;
- }
-
- this.addBlocks(newBlocksData, newConnections);
- }}
- usedNames={this.getUsedNames()}
- />
- );
- }
-
- renderRenameGroupModal = () => {
- return (
- <RenameGroupModal
- active={this.state.renameGroupModalInfo !== undefined}
- toggle={this.toggleRenameGroupModal}
- usedNames={this.getUsedNames()}
- currentName={this.state.renameGroupModalInfo || ''}
- saveNewName={(name) => {
- const oldName = this.state.renameGroupModalInfo;
- if(!oldName)
- return;
- this.renameGroup(oldName, name);
- }}
- />
- );
- }
-
- render = () => (
- <div className='toolchainEditor'>
- <div className='d-flex'>
- <Button
- className='mx-auto'
- outline
- color='secondary'
- onClick={() => this.props.saveFunc(this.props.data)}
- >
- Save Changes (Changes are <ValidSchemaBadge entity='toolchain' obj={this.props.data} />)
- </Button>
- </div>
- <Form onSubmit={(e) => e.preventDefault()}>
- <FormGroup tag='fieldset'>
- <FormGroup>
- <Label>Short Description</Label>
- <Input
- type='text'
- className='tcDescription'
- placeholder='Toolchain description...'
- value={this.props.data.contents['description']}
- onChange={e => this.setContents({ ...this.props.data.contents, 'description': e.target.value})}
- />
- </FormGroup>
- </FormGroup>
- { this.renderGraphicalEditor() }
- { this.renderEditModal() }
- { this.renderInsertModal() }
- { this.renderRenameGroupModal() }
- </Form>
- </div>
- );
-}
-
-const mapStateToProps = (state, ownProps) => {
- const tcs = Selectors.toolchainGet(state);
- const obj = {
- toolchains: tcs,
- databases: Selectors.databaseGet(state),
- sets: Selectors.flattenedDatabases(state),
- protocols: Selectors.databaseProtocols(state),
- normalAlgorithms: Selectors.normalBlocks(state),
- analyzerAlgorithms: Selectors.analyzerBlocks(state),
- data: tcs[ownProps.index] || getValidObj()
- };
- return obj;
-};
-
-const mapDispatchToProps = (dispatch, ownProps) => ({
- // replace the obj in the Redux store with the new object
- updateFunc: (obj) => {
- console.log(`dispatching for ${ obj.name }`);
- dispatch(Actions[`toolchainUpdate`](obj.name, obj));
- },
- createAlgorithmFromBlock: async (data: NormalBlock | AnalyzerBlock, conns: ConnectionType[]) => {
- let newObj = getValidAlgorithmObj({ name: data.name, contents: {} });
-
- // generate the alg obj
- // first, separate into groups
- // look at all connections to block, each different channel is a different group
- // put the inputs in the corresponding groups as well
- const inputGroups = conns.reduce((groups, c) => {
- const input = c.to.split('.')[1];
- const channel: string = c.channel;
- if(Array.isArray(groups[channel])){
- groups[channel].push(input);
- } else {
- groups[channel] = [input];
- }
- return groups;
- }, {});
-
- // coverts a list of input names to the format needed for algorithm groups
- const groupListToObj = (iList: string[]): {[string]: any} =>
- iList.reduce((o, i) => ({...o, [i]: { type: '' }}), {});
-
- // generate group objs from the inputs split between groups
- newObj.contents.groups = Object.entries(inputGroups)
- .map(([gName, inputs], i) => ({ name: gName, inputs: groupListToObj(inputs) }) );
-
- // is normal block
- if(Array.isArray(data.outputs)){
- // all block outputs only go to first group
- if(Array.isArray(data.outputs) && newObj.contents.groups.length > 0){
- newObj.contents.groups[0].outputs = groupListToObj(data.outputs);
- }
- }
- // is analyzer block
- else {
- // make it an analyzer
- delete newObj.contents['splittable'];
- newObj.contents.results = {};
- }
-
- console.log(newObj);
-
- await dispatch(Actions.createObject('algorithm', newObj)());
- }
-});
-
-export default connect(mapStateToProps, mapDispatchToProps)(ToolchainEditor);
diff --git a/conda/js/src/components/toolchain/ToolchainEditor.spec.jsx b/conda/js/src/components/toolchain/ToolchainEditor.spec.jsx
deleted file mode 100644
index 0fc44c5e4c72fb7557f1cc90ceea9bfd0b931405..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/ToolchainEditor.spec.jsx
+++ /dev/null
@@ -1,1103 +0,0 @@
-// @flow
-import React from 'react';
-import chai, { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-// sometimes we dont care about order of items in arrays when comparing objects deeply
-import deepEqualInAnyOrder from 'deep-equal-in-any-order';
-
-import { getValidToolchainObj as getValidObj, getValidDatabaseObj, getValidAlgorithmObj } from '@helpers/beat';
-import { ToolchainEditor as C } from '.';
-import * as Selectors from '@store/selectors';
-import reducer from '@store/reducers';
-
-import testTcs from '@test/test_tcs.json';
-import testDbs from '@test/test_dbs.json';
-import testAlgs from '@test/test_algs.json';
-
-const getIrisTc = (color1: string = '#008000', color2: string = '#FF0000') => {
- return {
- 'name': 'test/iris/1',
- 'contents': {
- 'description': '',
- 'datasets': [
- {
- 'name': 'training_data',
- 'outputs': [
- 'measurements',
- 'species'
- ]
- },
- {
- 'name': 'testing_data',
- 'outputs': [
- 'measurements',
- 'species'
- ]
- }
- ],
- 'blocks': [
- {
- 'inputs': [
- 'measurements',
- 'species'
- ],
- 'name': 'training_alg',
- 'outputs': [
- 'lda_machine'
- ],
- 'synchronized_channel': 'training_data'
- },
- {
- 'inputs': [
- 'lda_machine',
- 'measurements'
- ],
- 'name': 'testing_alg',
- 'outputs': [
- 'scores'
- ],
- 'synchronized_channel': 'testing_data'
- }
- ],
- 'analyzers': [
- {
- 'inputs': [
- 'scores',
- 'species'
- ],
- 'name': 'analyzer',
- 'synchronized_channel': 'testing_data'
- }
- ],
- 'connections': [
- {
- 'channel': 'testing_data',
- 'from': 'testing_alg.scores',
- 'to': 'analyzer.scores'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_alg.lda_machine',
- 'to': 'testing_alg.lda_machine'
- },
- {
- 'channel': 'testing_data',
- 'from': 'testing_data.measurements',
- 'to': 'testing_alg.measurements'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_data.measurements',
- 'to': 'training_alg.measurements'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_data.species',
- 'to': 'training_alg.species'
- },
- {
- 'channel': 'testing_data',
- 'from': 'testing_data.species',
- 'to': 'analyzer.species'
- }
- ],
- 'representation': {
- 'blocks': {
- 'analyzer': {
- 'col': 46,
- 'height': 3,
- 'row': 4,
- 'width': 10
- },
- 'testing_alg': {
- 'col': 32,
- 'height': 3,
- 'row': 3,
- 'width': 10
- },
- 'testing_data': {
- 'col': 6,
- 'height': 3,
- 'row': 5,
- 'width': 10
- },
- 'training_alg': {
- 'col': 19,
- 'height': 3,
- 'row': 0,
- 'width': 10
- },
- 'training_data': {
- 'col': 6,
- 'height': 3,
- 'row': 0,
- 'width': 10
- }
- },
- 'channel_colors': {
- 'testing_data': color2,
- 'training_data': color1
- },
- 'connections': {
- 'testing_alg.scores/analyzer.scores': [],
- 'testing_data.measurements/testing_alg.measurements': [],
- 'testing_data.species/analyzer.species': [],
- 'training_alg.lda_machine/testing_alg.lda_machine': [],
- 'training_data.measurements/training_alg.measurements': [],
- 'training_data.species/training_alg.species': []
- }
- }
- },
- 'extraContents': {
- 'groups': []
- }
- };
-};
-
-chai.use(deepEqualInAnyOrder);
-
-describe('<ToolchainEditor />', function() {
- // these tests might take a long time, comparatively
- this.timeout(10000);
-
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- describe('accepts', () => {
- const tcs = testTcs.map(tc => getValidObj(tc));
- const dbs = testDbs.map(db => getValidDatabaseObj(db));
- const algs = testAlgs.map(alg => getValidAlgorithmObj(alg));
-
- const state = {
- ...reducer({}, { type: '', payload: {}}),
- toolchain: tcs,
- database: dbs,
- algorithm: algs,
- };
-
- const sets = Selectors.flattenedDatabases(state);
- const protocols = Selectors.databaseProtocols(state);
- const normalAlgorithms = Selectors.normalBlocks(state);
- const analyzerAlgorithms = Selectors.analyzerBlocks(state);
-
- tcs.forEach(function(tc){
- const saveFunc = () => {};
- const updateFunc = () => {};
- it(`${ tc.name }`, () => {
- wrapper = mount(
- <C
- data={tc}
- sets={sets}
- protocols={protocols}
- toolchains={state.toolchain}
- databases={state.database}
- normalAlgorithms={normalAlgorithms}
- analyzerAlgorithms={analyzerAlgorithms}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'sets', 'protocols', 'toolchains', 'databases', 'normalAlgorithms', 'analyzerAlgorithms', 'saveFunc', 'updateFunc']
- ).deep.equal(
- [tc, sets, protocols, tcs, state.database, normalAlgorithms, analyzerAlgorithms, saveFunc, updateFunc]
- );
- });
- });
- });
-
- describe('creates', () => {
- const tcs = [];
- const dbs = testDbs.map(db => getValidDatabaseObj(db));
- const algs = testAlgs.map(alg => getValidAlgorithmObj(alg));
-
- const state = {
- ...reducer({}, { type: '', payload: {}}),
- toolchain: tcs,
- database: dbs,
- algorithm: algs,
- };
-
- const sets = Selectors.flattenedDatabases(state);
- const normalAlgorithms = Selectors.normalBlocks(state);
- const protocols = Selectors.databaseProtocols(state);
- const analyzerAlgorithms = Selectors.analyzerBlocks(state);
-
- it(`test/iris/1`, () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const tcName = 'test/iris/1';
- const tc = getValidObj({name: tcName, contents: {}});
- wrapper = mount(
- <C
- data={tc}
- sets={sets}
- protocols={protocols}
- toolchains={state.toolchain}
- databases={state.database}
- normalAlgorithms={normalAlgorithms}
- analyzerAlgorithms={analyzerAlgorithms}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'sets', 'protocols', 'toolchains', 'databases', 'normalAlgorithms', 'analyzerAlgorithms', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', tcName);
-
- // add lots of blocks
- const _selectBlocks = (bNames: string[]) => { return; };
- const selectBlocks = sinon.spy(_selectBlocks);
-
-
- /* add blocks via contextmenu handler */
-
- // pretend to right click at a spot by calling the event handler
- // dataset 1 training_data @ 6,0
- wrapper.instance().handleSvgContextMenu({}, { clicked: 'addDataset', x: 6, y: 0, selectBlocks });
- wrapper.update();
- expect(updateFunc.callCount).to.equal(1);
- expect(wrapper.props().data.contents.datasets.length).to.equal(1);
-
- // dataset 2 @ 6,5
- wrapper.instance().handleSvgContextMenu({}, { clicked: 'addDataset', x: 6, y: 5, selectBlocks });
- wrapper.update();
- expect(updateFunc.callCount).to.equal(2);
- expect(wrapper.props().data.contents.datasets.length).to.equal(2);
-
- // block 1 (training) @ 19,0
- wrapper.instance().handleSvgContextMenu({}, { clicked: 'addBlock', x: 19, y: 0, selectBlocks });
- wrapper.update();
- expect(updateFunc.callCount).to.equal(3);
- expect(wrapper.props().data.contents.blocks.length).to.equal(1);
-
- // block 2 (testing) @ 32,3
- wrapper.instance().handleSvgContextMenu({}, { clicked: 'addBlock', x: 32, y: 3, selectBlocks });
- wrapper.update();
- expect(updateFunc.callCount).to.equal(4);
- expect(wrapper.props().data.contents.blocks.length).to.equal(2);
-
- // block 3 (analyzer) @ 46,4
- wrapper.instance().handleSvgContextMenu({}, { clicked: 'addAnalyzer', x: 46, y: 4, selectBlocks });
- wrapper.update();
- expect(updateFunc.callCount).to.equal(5);
- expect(wrapper.props().data.contents.analyzers.length).to.equal(1);
-
- /* open edit modal for each & edit blocks via input onChange stuff */
-
- // training_data
- wrapper.find('rect#block_dataset').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- expect(wrapper.find('.modal').find('CacheInput#tcModalInitFocus').props().value).to.equal('dataset');
- wrapper.find('.modal').find('CacheInput#tcModalInitFocus').prop('onChange')( { target: { value: 'training_data' }});
- wrapper.update();
- /*
- wrapper.find('.modal button.btn-secondary').simulate('click');
- wrapper.update();
- */
- wrapper.find('.modal button.btn-secondary').simulate('click');
- wrapper.update();
- wrapper.find('.modal CacheInput[value="output"]').prop('onChange')( { target: { value: 'measurements' }});
- wrapper.update();
- wrapper.find('.modal CacheInput[value="output0"]').prop('onChange')( { target: { value: 'species' }});
- wrapper.update();
- wrapper.find('.modal button.btn-success').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(false);
-
- expect(wrapper.props().data.contents.datasets[0]).to.deep.equal({
- 'name': 'training_data',
- 'outputs': [
- 'measurements',
- 'species'
- ]
- });
-
- // testing_data
- wrapper.find('rect#block_dataset0').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- wrapper.update();
- expect(wrapper.find('.modal').find('CacheInput#tcModalInitFocus').props().value).to.equal('dataset0');
- wrapper.find('.modal').find('CacheInput#tcModalInitFocus').prop('onChange')( { target: { value: 'testing_data' }});
- wrapper.update();
- /*
- wrapper.find('.modal button.btn-secondary').simulate('click');
- wrapper.update();
- */
- wrapper.find('.modal button.btn-secondary').simulate('click');
- wrapper.update();
- wrapper.find('.modal CacheInput[value="output"]').prop('onChange')( { target: { value: 'measurements' }});
- wrapper.update();
- wrapper.find('.modal CacheInput[value="output0"]').prop('onChange')( { target: { value: 'species' }});
- wrapper.update();
- wrapper.find('.modal button.btn-success').simulate('click');
- wrapper.update();
-
- expect(wrapper.props().data.contents.datasets[1]).to.deep.equal({
- 'name': 'testing_data',
- 'outputs': [
- 'measurements',
- 'species'
- ]
- });
-
- // training_alg
- wrapper.find('rect#block_block').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- expect(wrapper.find('.modal').find('CacheInput#tcModalInitFocus').props().value).to.equal('block');
- wrapper.find('.modal').find('CacheInput#tcModalInitFocus').prop('onChange')( { target: { value: 'training_alg' }});
- wrapper.update();
- wrapper.find('.modal button.btn-secondary').at(1).simulate('click');
- wrapper.update();
- /*
- wrapper.find('.modal button.btn-secondary').at(0).simulate('click');
- wrapper.update();
- wrapper.find('.modal button.btn-secondary').at(1).simulate('click');
- wrapper.update();
- */
- wrapper.find('.modal CacheInput[value="input"]').prop('onChange')( { target: { value: 'measurements' }});
- wrapper.update();
- wrapper.find('.modal CacheInput[value="input0"]').prop('onChange')( { target: { value: 'species' }});
- wrapper.update();
- wrapper.find('.modal CacheInput[value="output"]').prop('onChange')( { target: { value: 'lda_machine' }});
- wrapper.update();
- wrapper.find('.modal button.btn-success').simulate('click');
- wrapper.update();
-
- expect(wrapper.props().data.contents.blocks[0]).to.deep.equal({
- 'name': 'training_alg',
- 'inputs': [
- 'measurements',
- 'species'
- ],
- 'outputs': [
- 'lda_machine'
- ],
- 'synchronized_channel': '',
- });
-
- // testing_alg
- wrapper.find('rect#block_block0').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- expect(wrapper.find('.modal').find('CacheInput#tcModalInitFocus').props().value).to.equal('block0');
- wrapper.find('.modal').find('CacheInput#tcModalInitFocus').prop('onChange')( { target: { value: 'testing_alg' }});
- wrapper.update();
- wrapper.find('.modal button.btn-secondary').at(1).simulate('click');
- wrapper.update();
- /*
- wrapper.find('.modal button.btn-secondary').at(0).simulate('click');
- wrapper.update();
- wrapper.find('.modal button.btn-secondary').at(1).simulate('click');
- wrapper.update();
- */
- wrapper.find('.modal CacheInput[value="input"]').prop('onChange')( { target: { value: 'measurements' }});
- wrapper.update();
- wrapper.find('.modal CacheInput[value="input0"]').prop('onChange')( { target: { value: 'lda_machine' }});
- wrapper.update();
- wrapper.find('.modal CacheInput[value="output"]').prop('onChange')( { target: { value: 'scores' }});
- wrapper.update();
- wrapper.find('.modal button.btn-success').simulate('click');
- wrapper.update();
-
- expect(wrapper.props().data.contents.blocks[1]).to.deep.equal({
- 'name': 'testing_alg',
- 'inputs': [
- 'measurements',
- 'lda_machine'
- ],
- 'outputs': [
- 'scores'
- ],
- 'synchronized_channel': '',
- });
-
- // analyzer
- wrapper.find('rect#block_analyzer').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- expect(wrapper.find('.modal').find('CacheInput#tcModalInitFocus').props().value).to.equal('analyzer');
- /*
- wrapper.find('.modal button.btn-secondary').simulate('click');
- wrapper.update();
- */
- wrapper.find('.modal button.btn-secondary').at(1).simulate('click');
- wrapper.update();
- wrapper.find('.modal CacheInput[value="input"]').prop('onChange')( { target: { value: 'scores' }});
- wrapper.update();
- wrapper.find('.modal CacheInput[value="input0"]').prop('onChange')( { target: { value: 'species' }});
- wrapper.update();
- wrapper.find('.modal button.btn-success').simulate('click');
- wrapper.update();
-
- expect(wrapper.props().data.contents.analyzers[0]).to.deep.equal({
- 'name': 'analyzer',
- 'inputs': [
- 'scores',
- 'species'
- ],
- 'synchronized_channel': '',
- });
-
- /* connect stuff via createConnections() */
- // channel: training_data
- wrapper.instance().createConnections([{ from: 'training_data.measurements', to: 'training_alg.measurements', channel: 'training_data' }]);
- // channel: training_data
- wrapper.instance().createConnections([{ from: 'training_data.species', to: 'training_alg.species', channel: 'training_data' }]);
- // channel: testing_data
- wrapper.instance().createConnections([{ from: 'testing_data.measurements', to: 'testing_alg.measurements', channel: 'testing_data' }]);
- // channel: training_data
- wrapper.instance().createConnections([{ from: 'training_alg.lda_machine', to: 'testing_alg.lda_machine', channel: 'training_data' }]);
- // channel: testing_data
- wrapper.instance().createConnections([{ from: 'testing_data.species', to: 'analyzer.species', channel: 'testing_data' }]);
- // channel: testing_data
- wrapper.instance().createConnections([{ from: 'testing_alg.scores', to: 'analyzer.scores', channel: 'testing_data' }]);
-
- /* fix channels */
- /*
- // testing_alg
- wrapper.find('rect#block_testing_alg').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- wrapper.find('.modal #channelSelector DropdownItem#channel-testing_data').simulate('click');
- wrapper.update();
- wrapper.find('button.close').simulate('click');
- wrapper.update();
- */
-
- expect(wrapper.props().data.contents.blocks[1]).to.deep.equal({
- 'name': 'testing_alg',
- 'inputs': [
- 'measurements',
- 'lda_machine'
- ],
- 'outputs': [
- 'scores'
- ],
- 'synchronized_channel': 'testing_data',
- });
-
- // analyzer
- /*
- wrapper.find('rect#block_analyzer').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- wrapper.find('.modal #channelSelector DropdownItem#channel-testing_data').simulate('click');
- wrapper.update();
- wrapper.find('button.close').simulate('click');
- wrapper.update();
- */
-
- expect(wrapper.props().data.contents.analyzers[0]).to.deep.equal({
- 'name': 'analyzer',
- 'inputs': [
- 'scores',
- 'species'
- ],
- 'synchronized_channel': 'testing_data',
- });
-
- /* theres alot of expect statements here for a reason:
- * each statement checks a sub-part of the toolchain
- * its redundant when the test passes but helpful when somethings off,
- * you can narrow the part of the tc that isn't right alot quicker
- */
- const data = wrapper.props().data;
- const ch1 = data.contents.representation.channel_colors['training_data'];
- const ch2 = data.contents.representation.channel_colors['testing_data'];
- expect(data.contents.datasets).to.deep.equalInAnyOrder( [
- {
- 'name': 'training_data',
- 'outputs': [
- 'measurements',
- 'species'
- ]
- },
- {
- 'name': 'testing_data',
- 'outputs': [
- 'measurements',
- 'species'
- ]
- }
- ]);
-
- expect(data.contents.blocks).to.deep.equalInAnyOrder([
- {
- 'inputs': [
- 'measurements',
- 'species'
- ],
- 'name': 'training_alg',
- 'outputs': [
- 'lda_machine'
- ],
- 'synchronized_channel': 'training_data'
- },
- {
- 'inputs': [
- 'lda_machine',
- 'measurements'
- ],
- 'name': 'testing_alg',
- 'outputs': [
- 'scores'
- ],
- 'synchronized_channel': 'testing_data'
- }
- ]);
-
- expect(data.contents.analyzers).to.deep.equalInAnyOrder([
- {
- 'inputs': [
- 'scores',
- 'species'
- ],
- 'name': 'analyzer',
- 'synchronized_channel': 'testing_data'
- }
- ]);
-
- expect(data.contents.connections).to.deep.equalInAnyOrder([
- {
- 'channel': 'testing_data',
- 'from': 'testing_alg.scores',
- 'to': 'analyzer.scores'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_alg.lda_machine',
- 'to': 'testing_alg.lda_machine'
- },
- {
- 'channel': 'testing_data',
- 'from': 'testing_data.measurements',
- 'to': 'testing_alg.measurements'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_data.measurements',
- 'to': 'training_alg.measurements'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_data.species',
- 'to': 'training_alg.species'
- },
- {
- 'channel': 'testing_data',
- 'from': 'testing_data.species',
- 'to': 'analyzer.species'
- }
- ]);
-
- expect(data.contents.representation).to.deep.equalInAnyOrder({
- 'blocks': {
- 'analyzer': {
- 'col': 46,
- 'height': 3,
- 'row': 4,
- 'width': 10
- },
- 'testing_alg': {
- 'col': 32,
- 'height': 3,
- 'row': 3,
- 'width': 10
- },
- 'testing_data': {
- 'col': 6,
- 'height': 3,
- 'row': 5,
- 'width': 10
- },
- 'training_alg': {
- 'col': 19,
- 'height': 3,
- 'row': 0,
- 'width': 10
- },
- 'training_data': {
- 'col': 6,
- 'height': 3,
- 'row': 0,
- 'width': 10
- }
- },
- 'channel_colors': {
- 'testing_data': ch2,
- 'training_data': ch1
- },
- 'connections': {
- 'testing_alg.scores/analyzer.scores': [],
- 'testing_data.measurements/testing_alg.measurements': [],
- 'testing_data.species/analyzer.species': [],
- 'training_alg.lda_machine/testing_alg.lda_machine': [],
- 'training_data.measurements/training_alg.measurements': [],
- 'training_data.species/training_alg.species': []
- }
- });
-
- expect(data).to.deep.equalInAnyOrder(getIrisTc(ch1, ch2));
- });
- });
-
- describe('Insert Object Modal', () => {
- const timeout = (ms) => {
- return new Promise(resolve => setTimeout(resolve, ms));
- }
-
- const tcs = testTcs.map(tc => getValidObj(tc));
- const dbs = testDbs.map(db => getValidDatabaseObj(db));
- const algs = testAlgs.map(alg => getValidAlgorithmObj(alg));
-
- const state = {
- ...reducer({}, { type: '', payload: {}}),
- toolchain: tcs,
- database: dbs,
- algorithm: algs,
- };
-
- const sets = Selectors.flattenedDatabases(state);
- const normalAlgorithms = Selectors.normalBlocks(state);
- const protocols = Selectors.databaseProtocols(state);
- const analyzerAlgorithms = Selectors.analyzerBlocks(state);
-
- it(`inserts test/iris_advanced/1`, async () => {
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const tcName = 'test/iom/1';
- const tc = getValidObj({name: tcName, contents: {}});
- wrapper = mount(
- <C
- data={tc}
- sets={sets}
- protocols={protocols}
- toolchains={state.toolchain}
- databases={state.database}
- normalAlgorithms={normalAlgorithms}
- analyzerAlgorithms={analyzerAlgorithms}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- expect(wrapper).to.have.props(
- ['data', 'sets', 'protocols', 'toolchains', 'databases', 'normalAlgorithms', 'analyzerAlgorithms', 'saveFunc', 'updateFunc']
- );
-
- expect(wrapper.props().data).to.have.property('name', tcName);
-
- const _selectBlocks = (bNames: string[]) => { return; };
- const selectBlocks = sinon.spy(_selectBlocks);
-
- // context-menu insert obj modal
- // insert at x:6 because thats where the original toolchain has its first block on the x-axis
- wrapper.instance().handleSvgContextMenu({}, { clicked: 'addObject', x: 6, y: 0, selectBlocks });
- wrapper.update();
- expect(wrapper.find('InsertObjectModal').props().active).to.equal(true);
- expect(updateFunc.callCount).to.equal(0);
-
- // search for "test/iris" in toolchain list
- wrapper.find('InsertObjectModal Input[placeholder="Search..."]').prop('onChange')( { target: { value: 'test/iris' }});
- wrapper.update();
-
- // wait for fuse process to search & return result list
- await timeout(1000);
- wrapper.update();
-
- // click on the iris_advanced one, which should be first
- const res = wrapper.find('ListGroup.searchResults ListGroupItem');
- expect(res).to.have.lengthOf(4);
- expect(res.at(0).html()).to.include('test/iris_advanced/1');
- res.at(0).simulate('click');
- wrapper.update();
-
- const data = wrapper.props().data;
- const ch1 = data.contents.representation.channel_colors['training_data'];
- const ch2 = data.contents.representation.channel_colors['testing_data'];
-
- // make sure the toolchain was inserted
- // basically make sure the toolchain is the same as test/iris_advanced/1 but w different name
- expect(data.contents).to.deep.equalInAnyOrder({
- 'analyzers': [
- {
- 'inputs': [
- 'scores',
- 'species'
- ],
- 'name': 'analyzer',
- 'synchronized_channel': 'testing_data'
- }
- ],
- 'blocks': [
- {
- 'inputs': [
- 'measurements',
- 'species'
- ],
- 'name': 'training_alg',
- 'outputs': [
- 'lda_machine'
- ],
- 'synchronized_channel': 'training_data'
- },
- {
- 'inputs': [
- 'lda_machine',
- 'measurements'
- ],
- 'name': 'testing_alg',
- 'outputs': [
- 'scores'
- ],
- 'synchronized_channel': 'testing_data'
- },
- {
- 'inputs': [
- 'measurements'
- ],
- 'name': 'pre_training',
- 'outputs': [
- 'measurements'
- ],
- 'synchronized_channel': 'training_data'
- },
- {
- 'inputs': [
- 'measurements'
- ],
- 'name': 'pre_testing',
- 'outputs': [
- 'measurements'
- ],
- 'synchronized_channel': 'testing_data'
- }
- ],
- 'connections': [
- {
- 'channel': 'testing_data',
- 'from': 'testing_alg.scores',
- 'to': 'analyzer.scores'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_alg.lda_machine',
- 'to': 'testing_alg.lda_machine'
- },
- {
- 'channel': 'testing_data',
- 'from': 'testing_data.species',
- 'to': 'analyzer.species'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_data.species',
- 'to': 'training_alg.species'
- },
- {
- 'channel': 'training_data',
- 'from': 'training_data.measurements',
- 'to': 'pre_training.measurements'
- },
- {
- 'channel': 'training_data',
- 'from': 'pre_training.measurements',
- 'to': 'training_alg.measurements'
- },
- {
- 'channel': 'testing_data',
- 'from': 'testing_data.measurements',
- 'to': 'pre_testing.measurements'
- },
- {
- 'channel': 'testing_data',
- 'from': 'pre_testing.measurements',
- 'to': 'testing_alg.measurements'
- }
- ],
- 'datasets': [
- {
- 'name': 'training_data',
- 'outputs': [
- 'measurements',
- 'species'
- ]
- },
- {
- 'name': 'testing_data',
- 'outputs': [
- 'measurements',
- 'species'
- ]
- }
- ],
- 'description': '',
- 'representation': {
- 'blocks': {
- 'analyzer': {
- 'col': 59,
- 'height': 3,
- 'row': 6,
- 'width': 10
- },
- 'pre_testing': {
- 'col': 19,
- 'height': 3,
- 'row': 5,
- 'width': 10
- },
- 'pre_training': {
- 'col': 19,
- 'height': 3,
- 'row': 0,
- 'width': 10
- },
- 'testing_alg': {
- 'col': 46,
- 'height': 3,
- 'row': 5,
- 'width': 10
- },
- 'testing_data': {
- 'col': 6,
- 'height': 3,
- 'row': 6,
- 'width': 10
- },
- 'training_alg': {
- 'col': 32,
- 'height': 3,
- 'row': 1,
- 'width': 10
- },
- 'training_data': {
- 'col': 6,
- 'height': 3,
- 'row': 1,
- 'width': 10
- }
- },
- 'channel_colors': {
- 'testing_data': ch2,
- 'training_data': ch1
- },
- 'connections': {
- 'pre_testing.measurements/testing_alg.measurements': [],
- 'pre_training.measurements/training_alg.measurements': [],
- 'testing_alg.scores/analyzer.scores': [],
- 'testing_data.measurements/pre_testing.measurements': [],
- 'testing_data.species/analyzer.species': [],
- 'training_alg.lda_machine/testing_alg.lda_machine': [],
- 'training_data.measurements/pre_training.measurements': [],
- 'training_data.species/training_alg.species': []
- }
- }
- });
- });
- });
-
- describe('Regression Tests', () => {
- const timeout = (ms) => {
- return new Promise(resolve => setTimeout(resolve, ms));
- };
-
- const tcs = testTcs.map(tc => getValidObj(tc));
- const dbs = testDbs.map(db => getValidDatabaseObj(db));
- const algs = testAlgs.map(alg => getValidAlgorithmObj(alg));
-
- const state = {
- ...reducer({}, { type: '', payload: {}}),
- toolchain: tcs,
- database: dbs,
- algorithm: algs,
- };
-
- const sets = Selectors.flattenedDatabases(state);
- const normalAlgorithms = Selectors.normalBlocks(state);
- const protocols = Selectors.databaseProtocols(state);
- const analyzerAlgorithms = Selectors.analyzerBlocks(state);
-
- const saveFunc = sinon.spy();
- const _updateFunc = (obj) => {
- wrapper.setProps && wrapper.setProps({ data: obj });
- };
- const updateFunc = sinon.spy(_updateFunc);
- const tcName = 'test/iris/1';
-
- it('Properly changes connection names when renaming an input', () => {
- const tc = getValidObj(getIrisTc());
- wrapper = mount(
- <C
- data={tc}
- sets={sets}
- protocols={protocols}
- toolchains={state.toolchain}
- databases={state.database}
- normalAlgorithms={normalAlgorithms}
- analyzerAlgorithms={analyzerAlgorithms}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- // change testing_alg.lda_machine to testing_alg.lda
- wrapper.find('rect#block_testing_alg').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- wrapper.find('.modal CacheInput[value="lda_machine"]').prop('onChange')( { target: { value: 'lda' }});
- wrapper.find('.modal button.btn-success').simulate('click');
- wrapper.update();
- expect(wrapper.find('.modal CacheInput[value="lda"]').props().value).to.equal('lda');
-
- const data = wrapper.props().data;
- expect(data.contents.representation.connections).to.not.have.property('training_alg.lda_machine/testing_alg.lda_machine');
- expect(data.contents.representation.connections).to.have.property('training_alg.lda_machine/testing_alg.lda');
- });
-
- it('Properly changes connection names when renaming an output', () => {
- const tc = getValidObj(getIrisTc());
- wrapper = mount(
- <C
- data={tc}
- sets={sets}
- protocols={protocols}
- toolchains={state.toolchain}
- databases={state.database}
- normalAlgorithms={normalAlgorithms}
- analyzerAlgorithms={analyzerAlgorithms}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- // change testing_alg.lda_machine to testing_alg.lda
- wrapper.find('rect#block_training_alg').simulate('click');
- wrapper.update();
- expect(wrapper.find('ToolchainModal').props().active).to.equal(true);
- wrapper.find('.modal CacheInput[value="lda_machine"]').prop('onChange')( { target: { value: 'lda' }});
- wrapper.find('.modal button.btn-success').simulate('click');
- wrapper.update();
- expect(wrapper.find('.modal CacheInput[value="lda"]').props().value).to.equal('lda');
-
- const data = wrapper.props().data;
- expect(data.contents.representation.connections).to.not.have.property('training_alg.lda_machine/testing_alg.lda_machine');
- expect(data.contents.representation.connections).to.have.property('training_alg.lda/testing_alg.lda_machine');
- });
-
- it('Properly deletes the training_data.species/training_alg.species connection', async () => {
- const conToDel = { from: 'training_data.species', to: 'training_alg.species', channel: 'training_data' };
- const tc = getValidObj(getIrisTc());
- wrapper = mount(
- <C
- data={tc}
- sets={sets}
- protocols={protocols}
- toolchains={state.toolchain}
- databases={state.database}
- normalAlgorithms={normalAlgorithms}
- analyzerAlgorithms={analyzerAlgorithms}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- // change testing_alg.lda_machine to testing_alg.lda
- expect(wrapper.exists('#training_data-species-training_alg-species')).to.equal(true);
- wrapper.instance().handleConnectionContextMenu({}, { clicked: 'delete', connection: conToDel });
- wrapper.update();
- expect(wrapper.exists('#training_data-species-training_alg-species')).to.equal(false);
-
- const data = wrapper.props().data;
- expect(data.contents.representation.connections).to.not.have.property('training_data.species/training_data.species');
- expect(data.contents.connections.findIndex(c => c.from == conToDel.from && c.to == conToDel.to)).to.equal(-1);
- });
-
- it('Properly deletes conns between training_data & training_alg, and clears training_alg sync channel', async () => {
- const conToDel = { from: 'training_data.species', to: 'training_alg.species', channel: 'training_data' };
- const conToDel2 = { from: 'training_data.measurements', to: 'training_alg.measurements', channel: 'training_data' };
- const tc = getValidObj(getIrisTc());
- wrapper = mount(
- <C
- data={tc}
- sets={sets}
- protocols={protocols}
- toolchains={state.toolchain}
- databases={state.database}
- normalAlgorithms={normalAlgorithms}
- analyzerAlgorithms={analyzerAlgorithms}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- // change testing_alg.lda_machine to testing_alg.lda
- expect(wrapper.exists('#training_data-species-training_alg-species')).to.equal(true);
- expect(wrapper.exists('#training_data-measurements-training_alg-measurements')).to.equal(true);
- wrapper.instance().handleConnectionContextMenu({}, { clicked: 'delete', connection: conToDel });
- wrapper.update();
- wrapper.instance().handleConnectionContextMenu({}, { clicked: 'delete', connection: conToDel2 });
- wrapper.update();
- expect(wrapper.exists('#training_data-species-training_alg-species')).to.equal(false);
- expect(wrapper.exists('#training_data-measurements-training_alg-measurements')).to.equal(false);
-
- const data = wrapper.props().data;
- expect(data.contents.blocks.find(b => b.name == 'training_alg')).to.have.property('synchronized_channel', '');
- });
-
- it('Disables the layout button when the toolchain is invalid', async () => {
- const conToDel = { from: 'training_data.species', to: 'training_alg.species', channel: 'training_data' };
- const conToDel2 = { from: 'training_data.measurements', to: 'training_alg.measurements', channel: 'training_data' };
- const tc = getValidObj(getIrisTc());
- wrapper = mount(
- <C
- data={tc}
- sets={sets}
- protocols={protocols}
- toolchains={state.toolchain}
- databases={state.database}
- normalAlgorithms={normalAlgorithms}
- analyzerAlgorithms={analyzerAlgorithms}
- saveFunc={saveFunc}
- updateFunc={updateFunc}
- />
- );
-
- // change testing_alg.lda_machine to testing_alg.lda
- expect(wrapper.exists('#training_data-species-training_alg-species')).to.equal(true);
- expect(wrapper.exists('#training_data-measurements-training_alg-measurements')).to.equal(true);
- expect(wrapper.find('Button[title="This will use Graphviz to generate a more visually understandable layout for your toolchain."]'))
- .to.have.prop('disabled', false);
- wrapper.instance().handleConnectionContextMenu({}, { clicked: 'delete', connection: conToDel });
- wrapper.update();
- wrapper.instance().handleConnectionContextMenu({}, { clicked: 'delete', connection: conToDel2 });
- wrapper.update();
- expect(wrapper.exists('#training_data-species-training_alg-species')).to.equal(false);
- expect(wrapper.exists('#training_data-measurements-training_alg-measurements')).to.equal(false);
-
- const data = wrapper.props().data;
- expect(data.contents.blocks.find(b => b.name == 'training_alg')).to.have.property('synchronized_channel', '');
- expect(wrapper.find('Button[title="This will use Graphviz to generate a more visually understandable layout for your toolchain."]'))
- .to.have.prop('disabled', true);
- });
- });
-});
diff --git a/conda/js/src/components/toolchain/ToolchainModal.jsx b/conda/js/src/components/toolchain/ToolchainModal.jsx
deleted file mode 100644
index 972393d6ed92e39f88a4cb214b9930b394500a11..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/ToolchainModal.jsx
+++ /dev/null
@@ -1,522 +0,0 @@
-// @flow
-import * as React from 'react';
-import { Link } from 'react-router-dom';
-import {
- Container,
- Row,
- Col,
- Button,
- ButtonGroup,
- Form,
- FormGroup,
- Label,
- Input,
- InputGroup,
- FormText,
- Collapse,
- Card,
- CardHeader,
- CardBody,
- TabContent, TabPane,
- Navbar,
- Nav, NavItem, NavLink, CardTitle, CardText,
- FormFeedback,
- Alert,
- InputGroupAddon,
- Badge,
- Modal, ModalBody, ModalHeader, ModalFooter,
- UncontrolledDropdown, UncontrolledButtonDropdown, DropdownToggle, DropdownMenu, DropdownItem,
-} from 'reactstrap';
-
-import CacheInput from '../CacheInput.jsx';
-import DeleteInputBtn from '../DeleteInputBtn.jsx';
-import { generateNewKey, copyObj } from '@helpers';
-import { toUrl } from '@helpers/api';
-import type { BlockType } from '@helpers/toolchainTypes';
-
-type Props = {
- // is the modal active?
- active: boolean,
- // block data
- data: BlockType,
- // name of all blocks
- blockNames: string[],
- // possible channels the block can be sync'd to (an obj w keys as channel names & vals as colours)
- possibleChannels: { [string]: string },
- // func to close modal
- toggle: () => any,
- // delete the block
- deleteBlock: () => any,
- // updates the block info
- updateBlockData: (data: ModalCache) => any,
- // creates an Algorithm based on the current block given the new alg's name
- createAlgorithmFromBlock: (algName: string) => any,
-};
-
-export type ModalAction = 'delete' | 'add' | 'change';
-
-type IO = { name: string, action: ?ModalAction, original: string };
-
-export type ModalCache = {
- name: string,
- synchronized_channel: ?string,
- inputs: ?IO[],
- outputs: ?IO[],
-};
-
-type State = {
- // name, synchronized_channel, inputs, outputs
- cache: ModalCache,
- // name of the algorithm to create using this block's data
- algName: string,
- // are there unsaved changes for the block?
- unsavedChanges: boolean,
- // whether the alg creation was successful or not
- wasSuccessful: ?boolean,
-};
-
-const newCacheFromData = (data: BlockType): ModalCache => {
- return {
- synchronized_channel: data.synchronized_channel || undefined,
- name: data.name,
- inputs: data.inputs ? data.inputs.map(i => ({ name: i, action: 'change', original: i })) : undefined,
- outputs: data.outputs ? data.outputs.map(i => ({ name: i, action: 'change', original: i })) : undefined,
- };
-};
-
-const getCurrentObjs = (arr: any) => arr
-.filter((o, i, os) => o.action !== 'delete' && !os.slice(i).find(p => p.action === 'delete' && p.name === o.name));
-
-const getCurrentNames = (arr: any) => getCurrentObjs(arr).map(o => o.name);
-
-class ToolchainModal extends React.Component<Props, State> {
- constructor(props: Props){
- super(props);
- }
-
- state = {
- cache: newCacheFromData(this.props.data),
- algName: '/',
- unsavedChanges: false,
- wasSuccessful: null,
- }
-
- componentDidUpdate = (prevProps: Props, prevState: State) => {
- if(this.props.data && prevProps.data !== this.props.data){
- this.setState({ cache: newCacheFromData(this.props.data) });
- }
- }
-
- updateAlgName = (newName: string) => {
- this.setState({ algName: newName });
- }
-
- addIO = (io: boolean) => {
- const arr = io ? 'inputs' : 'outputs';
- const newKey = generateNewKey(io ? 'input' : 'output', getCurrentNames(this.state.cache[arr]));
- this.setState({
- cache: {
- ...this.state.cache,
- [arr]: [
- ...this.state.cache[arr],
- {
- name: newKey,
- action: 'add',
- original: newKey,
- }
- ]
- },
- unsavedChanges: true,
- });
- }
-
- deleteIO = (io: boolean, name: string) => {
- const arr = io ? 'inputs' : 'outputs';
- this.setState({
- cache: {
- ...this.state.cache,
- [arr]: [
- ...this.state.cache[arr],
- {
- name: name,
- action: 'delete',
- original: name,
- }
- ]
- },
- unsavedChanges: true,
-
- });
- }
-
- changeIO = (io: boolean, oldObj: IO, newName: string) => {
- const arr = io ? 'inputs' : 'outputs';
- const newObj = {...oldObj, name: newName};
- const newArr = this.state.cache[arr].map(o => {
- if(o.original === oldObj.original){
- return newObj;
- } else {
- return o;
- }
- });
-
- this.setState({
- cache: {
- ...this.state.cache,
- [arr]: newArr,
- },
- unsavedChanges: true,
-
- });
- }
-
- changeName = (newName: string) => {
- this.setState({
- cache: {
- ...this.state.cache,
- name: newName,
- },
- unsavedChanges: newName !== this.props.data.name,
-
- });
- }
-
- changeChannel = (channel: string) => {
- //console.log(`changing channel from ${ this.state.cache.synchronized_channel } to ${ channel }`);
- this.setState({
- cache: {
- ...this.state.cache,
- synchronized_channel: channel,
- },
- unsavedChanges: channel !== this.props.data.synchronized_channel,
-
- });
- }
-
- saveBlock = () => {
- this.props.updateBlockData(this.state.cache);
- this.setState({ unsavedChanges: false });
- }
-
- // creates an Algorithm from the (potentially unsaved) block data
- // and gives the user a link to go edit it in a new tab
- createAlgorithmFromBlock = async () => {
- const algName = `${ this.state.algName }/1`;
- try {
- await this.props.createAlgorithmFromBlock(algName);
- this.setState({ wasSuccessful: true });
- } catch(e) {
- this.setState({ wasSuccessful: false });
- }
- //window.open(, '_blank');
- }
-
- resetCaches = () => {
- this.setState({ cache: newCacheFromData(this.props.data), unsavedChanges: false, algName: '/', wasSuccessful: null });
- }
-
- renderAlgorithmCreator = () => {
- const segs = this.state.algName.split('/');
- const user = segs[0];
- const name = segs[1];
- const unsavedChanges = this.state.unsavedChanges;
- const algStr = user == '' || name == '' ? '' : `"${ this.state.algName }"`;
-
- return (
- <React.Fragment>
- <Alert color='secondary'>
- <Label>
- Create an Algorithm from this Block
- </Label>
- <Row>
- <Col sm='4 mr-0 pr-0'>
- <CacheInput
- fieldTest
- value={user}
- onChange={(e) => this.updateAlgName(`${ e.target.value }/${ name }`)}
- placeholder={'Username...'}
- disabled={unsavedChanges}
- />
- </Col>
- <Col sm='4 mr-0 pr-0'>
- <CacheInput
- fieldTest
- value={name}
- onChange={(e) => this.updateAlgName(`${ user }/${ e.target.value }`)}
- placeholder={'Name...'}
- disabled={unsavedChanges}
- />
- </Col>
- <Col sm='4'>
- <Button
- block
- color='secondary'
- onClick={() => {
- this.createAlgorithmFromBlock();
- }}
- disabled={user == '' || name == '' || unsavedChanges}
- >
- Create { algStr }
- </Button>
- </Col>
- </Row>
- { unsavedChanges && user !== '' && name !== '' &&
- <Row>
- <Col>
- <span className='text-danger'>
- Please save your changes before creating an algorithm!
- </span>
- </Col>
- </Row>
- }
- { this.state.wasSuccessful &&
- <Row>
- <Col>
- <span>
- The algorithm was created!{' '}
- <Link
- rel="noopener noreferrer"
- target='_blank'
- to={`/algorithm/${ this.state.algName }/1`}
- >
- Edit it here
- </Link>
- .
- If you do not see it, please refresh your browser tab or window.
- </span>
- </Col>
- </Row>
- }
- { this.state.wasSuccessful === false &&
- <Row>
- <Col>
- <span className='text-danger'>
- The algorithm could not be created. Please create it manually.
- </span>
- </Col>
- </Row>
- }
-
- </Alert>
- </React.Fragment>
- );
- }
-
- render = () => {
- const data = this.state.cache;
- if(!data)
- return null;
-
- const hasInputs = Array.isArray(data.inputs);
- const hasOutputs = Array.isArray(data.outputs);
- // TODO: right now this is just an escape hatch for channel changing not propogating throughout the network. this needs to be fixed
- const channelSelectDisabled = false; //Object.keys(this.props.possibleChannels).length === 1;
-
- const currChannel: string = data.synchronized_channel || '';
-
- const formatChannel = (channel: string) => {
- return (
- <span>
- <span style={{backgroundColor: this.props.possibleChannels[channel] || '#000000'}}>
-
- </span>
-
- { channel === '' ? '<none>' : channel }
- </span>
- );
- };
-
- const inputNames = hasInputs ? getCurrentNames(data.inputs) : [];
- const outputNames = hasOutputs ? getCurrentNames(data.outputs) : [];
- const inputDup = inputNames.slice().sort().find((n, i, ns) => i !== 0 && n === ns[i - 1]);
- const outputDup = outputNames.slice().sort().find((n, i, ns) => i !== 0 && n === ns[i - 1]);
- const hasInputDups = inputDup != undefined;
- const hasOutputDups = outputDup != undefined;
-
- return (
- <Modal
- size='lg'
- isOpen={this.props.active}
- toggle={this.props.toggle}
- fade={true}
- onOpened={e => {
- const f = document.querySelector('#tcModalInitFocus');
- if(f && f.focus)
- f.focus();
- this.resetCaches();
- }}
- >
- <ModalHeader toggle={this.props.toggle}>
- Editing <pre className='preInline'>{data.name}</pre>
- {' '}
- </ModalHeader>
- <ModalBody>
- <Form>
- <FormGroup>
- {
- hasInputs && this.renderAlgorithmCreator()
- }
- </FormGroup>
- <FormGroup row>
- <Col>
- <Label>Block Name</Label>
- <CacheInput
- delay={200}
- id='tcModalInitFocus'
- value={data.name || ''}
- fieldTest={true}
- onChange={(e) => {
- this.changeName(e.target.value);
- }}
- validateFunc={(str) => {
- if(str === this.props.data.name){
- return true;
- }
- if(this.props.blockNames.includes(str)){
- return <span>This name is already taken by an existing block</span>;
- }
- if(str.includes('-')){
- return <span>{`Cannot include the dash ("-") character`}</span>;
- }
- return true;
- }}
- />
- </Col>
- { data.synchronized_channel !== undefined
- &&
- <Col>
- <Label>Synchronized channel</Label>
- <div>
- <UncontrolledDropdown
- id='channelSelector'
- disabled={channelSelectDisabled}
- >
- <DropdownToggle caret outline block>
- { formatChannel(currChannel || '') }
- </DropdownToggle>
- <DropdownMenu>
- {
- Array.from(new Set([...Object.keys(this.props.possibleChannels), currChannel || '']))
- .filter(c => c !== '')
- .map((c, i) =>
- <DropdownItem
- id={`channel-${ c }`}
- key={i}
- onClick={e => this.changeChannel(c)}
- >
- { formatChannel(c) }
- </DropdownItem>
- )
- }
- </DropdownMenu>
- </UncontrolledDropdown>
- </div>
- </Col>
- }
- </FormGroup>
- <Row>
- {
- hasInputs &&
- <Col sm={hasOutputs ? 6 : 12}>
- <Label>Inputs</Label>
- {
- getCurrentObjs(data.inputs)
- .map((obj, i, inputs) => {
- const input = obj.name;
- return (
- <FormGroup
- key={i}
- >
- <CacheInput
- value={input}
- fieldTest={true}
- onChange={(e) => {
- this.changeIO(true, obj, e.target.value);
- }}
- invalid={input === inputDup}
- >
- <DeleteInputBtn
- deleteFunc={e => {
- this.deleteIO(true, input);
- }}
- />
- </CacheInput>
- </FormGroup>
- );
- })
- }
- <Button
- onClick={e => {
- this.addIO(true);
- }}
- >
- Add Input
- </Button>
- </Col>
- }
- {
- hasOutputs &&
- <Col sm={hasInputs ? 6 : 12}>
- <Label>Outputs</Label>
- {
- getCurrentObjs(data.outputs)
- .map((obj, i, outputs) => {
- const output = obj.name;
- return (
- <FormGroup
- key={i}
- >
- <CacheInput
- value={output}
- fieldTest={true}
- onChange={(e) => {
- this.changeIO(false, obj, e.target.value);
- }}
- >
- <DeleteInputBtn
- deleteFunc={e => {
- this.deleteIO(false, output);
- }}
- />
- </CacheInput>
- </FormGroup>
- );
- })
- }
- <Button
- onClick={e => {
- this.addIO(false);
- }}
- >
- Add Output
- </Button>
- </Col>
- }
- </Row>
- </Form>
- </ModalBody>
- <ModalFooter>
- <Button color='danger'
- onClick={(e) => {
- this.props.deleteBlock();
- this.props.toggle();
- }}
- >
- Delete Block
- </Button>
- <Button color='success'
- disabled={hasInputDups || hasOutputDups}
- onClick={(e) => {
- this.saveBlock();
- this.props.toggle();
- }}
- >
- Save Changes
- </Button>
- </ModalFooter>
- </Modal>
- );
- }
-}
-
-export default ToolchainModal;
diff --git a/conda/js/src/components/toolchain/ToolchainModal.spec.jsx b/conda/js/src/components/toolchain/ToolchainModal.spec.jsx
deleted file mode 100644
index cb6a8d250b9767b75aa3ae1cdd1db8598dd1b8e1..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/ToolchainModal.spec.jsx
+++ /dev/null
@@ -1,172 +0,0 @@
-// @flow
-import React from 'react';
-import { expect } from 'chai';
-import { mount } from 'enzyme';
-import sinon from 'sinon';
-import { spies } from '@test';
-
-import C from './ToolchainModal.jsx';
-
-// sleep for a bit, to wait for async things
-const sleep = (ms) => {
- return new Promise(resolve => setTimeout(resolve, ms));
-};
-
-describe('<ToolchainModal />', function () {
- this.timeout(10000);
-
- let wrapper;
-
- afterEach(() => {
- if(wrapper && wrapper.unmount)
- wrapper.unmount();
- });
-
- const testBlockData = {
- name: 'block1',
- inputs: [
- 'input1',
- ],
- outputs: [
- 'output1',
- ],
- synchronized_channel: 'dataset1',
- };
-
- const testBlockData2 = {
- name: 'block1',
- inputs: [
- 'input0',
- 'input1',
- ],
- outputs: [
- 'output1',
- ],
- synchronized_channel: 'dataset1',
- };
-
- const testChannels = { 'dataset1': '#880000' };
-
- const testBlockNames = ['block1'];
-
- it('accepts the test data with the right props', () => {
- wrapper = mount(
- <C
- active={true}
- data={testBlockData}
- blockNames={testBlockNames}
- possibleChannels={testChannels}
- toggle={() => {}}
- deleteBlock={() => {}}
- updateBlockData={() => {}}
- createAlgorithmFromBlock={() => {}}
- />
- );
- expect(wrapper).to.have.props([
- 'active',
- 'data',
- 'blockNames',
- 'possibleChannels',
- 'toggle',
- 'deleteBlock',
- 'updateBlockData',
- 'createAlgorithmFromBlock',
- ]);
- });
-
- it('lets you change the name to another valid name', async () => {
- const newBlockName = 'block2';
- wrapper = mount(
- <C
- active={true}
- data={testBlockData}
- blockNames={testBlockNames}
- possibleChannels={testChannels}
- toggle={() => {}}
- deleteBlock={() => {}}
- updateBlockData={() => {}}
- createAlgorithmFromBlock={() => {}}
- />
- );
- wrapper.find('input#tcModalInitFocus').prop('onChange')( { target: { value: newBlockName }});
- wrapper.update();
- await sleep(300);
- wrapper.update();
- expect(wrapper.exists('.input-group-append .text-danger')).to.equal(false);
- });
-
- it('doesnt let you change the name to a valid name with a dash ("-") in it', async () => {
- const newBlockName = 'block-2';
- wrapper = mount(
- <C
- active={true}
- data={testBlockData}
- blockNames={testBlockNames}
- possibleChannels={testChannels}
- toggle={() => {}}
- deleteBlock={() => {}}
- updateBlockData={() => {}}
- createAlgorithmFromBlock={() => {}}
- />
- );
- wrapper.find('input#tcModalInitFocus').prop('onChange')( { target: { value: newBlockName }});
- wrapper.update();
- await sleep(300);
- wrapper.update();
- expect(wrapper.exists('.input-group-append .text-danger')).to.equal(true);
- });
-
- it('lets you switch the names of inputs (test 1)', async () => {
- const newBlockName = 'block';
- wrapper = mount(
- <C
- active={true}
- data={testBlockData2}
- blockNames={testBlockNames}
- possibleChannels={testChannels}
- toggle={() => {}}
- deleteBlock={() => {}}
- updateBlockData={() => {}}
- createAlgorithmFromBlock={() => {}}
- />
- );
- wrapper.find('input[value="input0"]').prop('onChange')( { target: { value: 'input1' }});
- wrapper.update();
- await sleep(1000);
- wrapper.find('input[value="input1"]').at(1).prop('onChange')( { target: { value: 'input0' }});
- wrapper.update();
- await sleep(1000);
- wrapper.update();
- expect(wrapper.state('cache')).to.have.deep.property('inputs', [
- { action: 'change', name: 'input1', original: 'input0' },
- { action: 'change', name: 'input0', original: 'input1' },
- ]);
- });
-
- it('lets you switch the names of inputs (test 2)', async () => {
- const newBlockName = 'block';
- wrapper = mount(
- <C
- active={true}
- data={testBlockData2}
- blockNames={testBlockNames}
- possibleChannels={testChannels}
- toggle={() => {}}
- deleteBlock={() => {}}
- updateBlockData={() => {}}
- createAlgorithmFromBlock={() => {}}
- />
- );
- wrapper.find('input[value="input1"]').prop('onChange')( { target: { value: 'input0' }});
- wrapper.update();
- await sleep(1000);
- wrapper.find('input[value="input0"]').at(0).prop('onChange')( { target: { value: 'input1' }});
- wrapper.update();
- await sleep(1000);
- wrapper.update();
- expect(wrapper.state('cache')).to.have.deep.property('inputs', [
- { action: 'change', name: 'input1', original: 'input0' },
- { action: 'change', name: 'input0', original: 'input1' },
- ]);
- });
-});
diff --git a/conda/js/src/components/toolchain/index.js b/conda/js/src/components/toolchain/index.js
deleted file mode 100644
index 307b74929f2cb920f004f9294e25febba61faad4..0000000000000000000000000000000000000000
--- a/conda/js/src/components/toolchain/index.js
+++ /dev/null
@@ -1,10 +0,0 @@
-// @flow
-import ConnectedToolchainEditor, {ToolchainEditor} from './ToolchainEditor.jsx';
-import GraphicalEditor from './GraphicalEditor.jsx';
-
-export {
- ToolchainEditor,
- GraphicalEditor,
-};
-
-export default ConnectedToolchainEditor;
diff --git a/conda/js/src/helpers/api.js b/conda/js/src/helpers/api.js
deleted file mode 100644
index 618229ba77c0c388101f11ab88aea570aaca49aa..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/api.js
+++ /dev/null
@@ -1,114 +0,0 @@
-// @flow
-// API helpers not tied to any specific library
-import { pluralize } from './beat.js';
-import type { BeatEntity } from './beat.js';
-import type { StringObject } from '.';
-
-export type Fetchable = BeatEntity | 'settings' | 'environments';
-
-const fetchConfig = {
- mode: 'cors'
-};
-
-let port = '5000';
-
-export const toUrl = (str: string) => `http://127.0.0.1:${ port }/${ str }`;
-
-// curried func for calling the REST API
-// basically:
-// <response> = genApiCall(<http rest verb>)(<endpoint>)(<payload if any>)
-const genApiCall = (method) => (be: Fetchable) => async (obj: any) => {
- const validMethods = ['GET', 'POST', 'PUT', 'DELETE'];
- if(!validMethods.includes(method))
- throw new Error(`invalid method: ${ method }`);
- const headers = new Headers();
- if(method !== 'GET')
- headers.append('Content-Type', 'application/json');
- const config = {
- headers,
- ...fetchConfig,
- ...{
- method,
- body: obj ? JSON.stringify(obj) : obj
- }
- };
-
- const seg = be === 'settings' || be === 'environments' ? be : pluralize(be);
- let res = await fetch(toUrl(seg), config);
- let json = await res.json();
- console.log(json);
- return json;
-};
-
-// sets the port number for api calls
-export const setPort = (newPort: number) => {
- port = newPort;
-};
-
-// gens all the default API funcs for an endpoint
-export const genModuleApiFuncs = (be: Fetchable) => {
- return {
- get: genApiCall('GET')(be),
- post: genApiCall('POST')(be),
- put: genApiCall('PUT')(be),
- delete: genApiCall('DELETE')(be),
- };
-};
-
-// fetches layout info from graphviz for a toolchain
-const layoutUrl = toUrl('layout');
-export const fetchLayout = async (tcName: string) => {
- const layoutConfig = {
- headers: {
- 'Accept': 'application/json',
- 'Content-Type': 'application/json'
- },
- method: 'POST',
- body: JSON.stringify({ toolchain: tcName }),
- };
- const res = await fetch(layoutUrl, layoutConfig);
- const json = await res.json();
- return JSON.parse(json);
-};
-
-// generates a python file from a template given some args payload
-const templatesUrl = toUrl('templates');
-// given the BEAT entity and a dict of args, tries to generate a python file from a template
-// returns either the response if successful or `false` if the python file already exists
-const generateTemplate = async (be: string, args: {[string]: any}) => {
- const templatesConfig = {
- headers: {
- 'Accept': 'application/json',
- 'Content-Type': 'application/json'
- },
- method: 'POST',
- body: JSON.stringify({ entity: be, ...args}),
- };
- const res = await fetch(templatesUrl, templatesConfig);
- if(res.status === 200){
- // okay
- const json = await res.json();
- return JSON.parse(json);
- } else {
- if(res.status === 409){
- // python file already exists, return false to let callers know
- return false;
- }
- }
-};
-
-export const generateDatabaseTemplate = async (name: string, confirm: boolean, views: string[]) => {
- return generateTemplate('databases', {name, views, confirm});
-};
-
-export const generateAlgorithmTemplate = async (name: string, confirm: boolean, contents: any) => {
- return generateTemplate('algorithms', {name, contents, confirm});
-};
-
-export const generateLibraryTemplate = async (name: string, confirm: boolean, uses: StringObject) => {
- return generateTemplate('libraries', {name, uses, confirm});
-};
-
-export const generatePlotterTemplate = async (name: string, confirm: boolean, uses: StringObject) => {
- return generateTemplate('plotters', {name, uses, confirm});
-};
diff --git a/conda/js/src/helpers/beat.js b/conda/js/src/helpers/beat.js
deleted file mode 100644
index 77d15e8f9eca6b3173f2a35cd66b2561bc3d3dbb..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/beat.js
+++ /dev/null
@@ -1,525 +0,0 @@
-// @flow
-// BEAT-specific helpers
-import { copyObj } from '.';
-import type { Contents as ToolchainContents, Group } from './toolchainTypes';
-// all the BEAT entities
-export type BeatEntity = 'database' | 'library' | 'dataformat' | 'algorithm' | 'toolchain' | 'experiment' | 'plotter' | 'plotterparameter';
-
-// format of an instance of a beat entity in redux store
-export type BeatObject = {|
- // name of the object
- name: string,
- // contents (whats stored in the JSON files in the beat prefix)
- contents: any,
- // extra contents that are additions, arent relevant to the web platform, and dont conform to the BEAT schemas
- extraContents?: {
- groups: Group[]
- },
-|};
-
-// format for the settings object
-export type BeatSettings = {|
- prefix: string
-|};
-
-// format for an environment object (info about the available docker envs)
-export type BeatEnvironment = {|
- name: string,
- packages: { [string]: string },
- queues: {
- [string]: {
- memory_limit: number,
- nb_slots: number,
- max_slots_per_user: number,
- nb_cores_per_slot: number,
- time_limit: number,
- },
- },
- accessibility: string,
- languages: [ string ],
- version: string,
- short_description: string,
-|};
-
-export const BEAT_ENTITIES: BeatEntity[] = [
- 'database',
- 'library',
- 'dataformat',
- 'algorithm',
- 'toolchain',
- 'experiment',
- 'plotter',
- 'plotterparameter',
-];
-
-// types auto-recognized by beat.core
-export const BUILTIN_TYPES = [
- 'int8',
- 'int16',
- 'int32',
- 'int64',
- 'uint8',
- 'uint16',
- 'uint32',
- 'uint64',
- 'float32',
- 'float64',
- 'complex64',
- 'complex128',
- 'bool',
- 'string',
- 'array',
- 'object',
-];
-
-// result types for analyzers
-export const ANALYZER_RESULT_TYPES = [
- 'int32',
- 'float32',
- 'bool',
- 'string'
-];
-
-Object.freeze(BEAT_ENTITIES);
-Object.freeze(BUILTIN_TYPES);
-Object.freeze(ANALYZER_RESULT_TYPES);
-
-// get toolchain name from experiment name
-export const getTcFromExpName = (expName: string) => expName.split('/').slice(1, 4).join('/');
-
-// default object for beat entity instances
-export const getDefaultEntityObject = () => ({name: '', contents: {}});
-
-// most fields/name of/in beat objects need to conform to this regex
-export const rxField = /^[a-zA-Z_][a-zA-Z0-9_-]*$/;
-
-// how many segments (separated by '/') are in an entity's name
-export const nameSegmentsForEntity = (entity: BeatEntity) => {
- if(entity === 'database')
- return 2;
- if(entity === 'experiment')
- return 5;
- return 3;
-};
-
-// pluralizes an entity
-export const pluralize = (be: BeatEntity): string => {
- switch(be) {
- case 'database':
- return 'databases';
- case 'library':
- return 'libraries';
- case 'dataformat':
- return 'dataformats';
- case 'algorithm':
- return 'algorithms';
- case 'toolchain':
- return 'toolchains';
- case 'experiment':
- return 'experiments';
- case 'plotter':
- return 'plotters';
- case 'plotterparameter':
- return 'plotterparameters';
- default:
- throw new Error(`Cannot pluralize invalid BE: "${ be }"`);
- }
-};
-
-// validates that a name for beat object of an entity is fine, given the names for all objects of that entity
-export const nameValidator = (be: BeatEntity, allNames?: string[] = []) => (name: string): boolean => {
- if(allNames.includes(name)){
- return false;
- }
-
- const rxThreeSeg = /^[A-Za-z0-9_-]+\/[A-Za-z0-9_-]+\/\d+$/;
- const rxTwoSeg = /^[A-Za-z0-9_]+\/\d+$/;
- const rxFiveSeg = /^[A-Za-z0-9_-]+\/[A-Za-z0-9_-]+\/[A-Za-z0-9_-]+\/\d+\/[A-Za-z0-9_-]+$/;
- if(be !== 'database' && be !== 'experiment' && !rxThreeSeg.test(name))
- return false;
- if(be === 'database' && !rxTwoSeg.test(name))
- return false;
- if(be === 'experiment' && !rxFiveSeg.test(name))
- return false;
-
- const segs = name.split('/');
- if(segs.length < 2){
- return false;
- }
- if(segs[0] === '/') {
- return false;
- }
- if(segs[segs.length - 1] === '/'){
- return false;
- }
-
- return true;
-};
-
-// some editors are prime targets for better/additional validation
-
-export type ValidatorObjectField = boolean | boolean[];
-
-// only algs & libs have this extra validation right now
-export type ValidatorObject = AlgorithmValidatorObject | LibraryValidatorObject;
-
-export type ValidatorFunc = (obj: BeatObject, allObjs: BeatObject[]) => ValidatorObject;
-
-// algorithm validator info
-export type AlgorithmValidatorObject = {
- // is algorithm name valid?
- name: ValidatorObjectField,
- // is there at least one endpoint group?
- endpoint0Exists: ValidatorObjectField,
- // does the first endpoint have at least 1 input field?
- endpoint0InputExists: ValidatorObjectField,
- // does the first endpoint have at least 1 output field?
- endpoint0OutputExists: ValidatorObjectField,
- // does each endpoint have a unique name?
- endpointNamesUnique: ValidatorObjectField,
- // is there at least 1 result?
- result0Exists: ValidatorObjectField,
-};
-
-// lots of checks for algs
-export const algorithmValidator = (obj: BeatObject, allObjs: BeatObject[]): AlgorithmValidatorObject => {
-
- let name = false;
- try {
- name = nameValidator('algorithm', allObjs.map(o => o.name))(obj.name);
- } catch(e){}
-
- let endpoint0Exists = false;
- try {
- endpoint0Exists = obj.contents.groups.length > 0;
- } catch(e){}
-
- let endpoint0InputExists = false;
- try {
- endpoint0InputExists = Object.keys(obj.contents.groups[0].inputs).length > 0;
- } catch(e){}
-
- let endpoint0OutputExists = false;
- try {
- endpoint0OutputExists = Object.keys(obj.contents.groups[0].outputs).length > 0;
- } catch(e){}
-
- let endpointNamesUnique = false;
- try {
- endpointNamesUnique = Array.from(new Set(obj.contents.groups.map(g => g.name))).length === obj.contents.groups.length;
- } catch(e){}
-
- let result0Exists = false;
- try {
- result0Exists = Object.keys(obj.contents.results).length > 0;
- } catch(e){}
-
- const valid: AlgorithmValidatorObject = {
- name,
- endpoint0Exists,
- endpoint0InputExists,
- endpoint0OutputExists,
- endpointNamesUnique,
- result0Exists,
- };
-
- return valid;
-};
-
-// extra validation for libs
-export type LibraryValidatorObject = {
- // is library name valid?
- name: ValidatorObjectField,
- // is language valid?
- language: ValidatorObjectField,
-};
-
-export const libraryValidator = (obj: BeatObject, allObjs: BeatObject[]): LibraryValidatorObject => {
- let name = false;
- try {
- name = nameValidator('library', allObjs.map(o => o.name))(obj.name);
- } catch(e) {
- }
-
- let language = false;
- try {
- language = obj.contents.language === 'python';
- } catch(e) {
- }
-
- return {
- name,
- language,
- };
-};
-
-// these next several funcs, the "getValid***Obj", returns a properly-formed JSON obj,
-// optionally filling in fields with an existing obj.
-// basically they exist to keep malformed JSON from breaking the editors.
-//
-export const getValidAlgorithmObj = (data: BeatObject = {name: '', contents: {}}) => {
- const getObj = {
- name: '',
- contents: {},
- ...copyObj(data)
- };
-
- const obj = {
- ...getObj,
- contents: {
- parameters: {},
- uses: {},
- groups: [
- {
- name: 'group',
- inputs: {},
- outputs: {},
- }
- ],
- description: '',
- language: 'python',
- ...getObj.contents,
- },
- };
-
- if(!obj.contents.hasOwnProperty('results') && !obj.contents.hasOwnProperty('splittable'))
- obj.contents.splittable = false;
-
- return obj;
-};
-
-export const getValidDatabaseObj = (data: BeatObject = {name: '', contents: {}}) => {
- const getObj = {
- name: '',
- contents: {},
- ...copyObj(data)
- };
-
- if(Array.isArray(getObj.contents.protocols)){
- getObj.contents.protocols = getObj.contents.protocols
- .map(p => {
- p.sets = p.sets.map(s => ({parameters: {}, ...s}));
- return p;
- });
- }
-
- const obj = {
- ...getObj,
- contents: {
- 'description': '',
- 'root_folder': '',
- 'protocols': [],
- ...getObj.contents,
- },
- };
-
- return obj;
-};
-
-export const getValidDataformatObj = (data: BeatObject = {name: '', contents: {}}) => {
- const getObj = {
- name: '',
- contents: {},
- ...copyObj(data)
- };
-
- const obj = {
- ...getObj,
- contents: {
- '#description': '',
- ...getObj.contents,
- },
- };
-
- return obj;
-};
-
-export type ParameterValue = number | string | boolean;
-
-// returns the default value for a specific parameter, given the parameter object
-export const expGetDefaultParameterValue = (parameter: any): ParameterValue => {
- const parsedDefault = Number.parseFloat(parameter.default);
- if(parameter.default)
- return Number.isNaN(parsedDefault) ? parameter.default : parsedDefault;
- if(parameter.range)
- return parameter.range[0];
- if(parameter.choice && parameter.choice.length > 0)
- return parameter.choice.length[0];
-
- switch(parameter.type){
- case 'string':
- return '';
- case 'bool':
- return false;
- // number
- default:
- return 0;
- }
-};
-
-export const getValidExperimentObj = (data: BeatObject = {name: '', contents: {}}, tc: BeatObject, algs: BeatObject[]) => {
- const getObj = {
- name: '',
- contents: {},
- ...copyObj(data)
- };
-
- getObj.contents.datasets = getObj.contents.datasets || {};
- getObj.contents.blocks = getObj.contents.blocks || {};
- getObj.contents.analyzers = getObj.contents.analyzers || {};
-
- const datasets = tc.contents.datasets
- .map(ds => ({[ds.name]: getObj.contents.datasets[ds.name] || {set: '', protocol: '', database: ''}}))
- .reduce((o, ods) => ({...o, ...ods}), {...getObj.contents.datasets});
-
- const blocks = tc.contents.blocks
- .map(b => ({
- [b.name]: {
- algorithm: '',
- inputs: b.inputs ? b.inputs.reduce((o, inp) => ({...o, [inp]: ''}), {}) : {},
- outputs: b.outputs ? b.outputs.reduce((o, out) => ({...o, [out]: ''}), {}) : {},
- parameters: {},
- ...(getObj.contents.blocks[b.name] || {})
- }
- }))
- .reduce((o, blk) => ({...o, ...blk}), {...getObj.contents.blocks});
-
- const analyzers = tc.contents.analyzers
- .map(a => ({
- [a.name]: {
- algorithm: '',
- inputs: a.inputs ? a.inputs.reduce((o, inp) => ({...o, [inp]: ''}), {}) : {},
- parameters: {},
- ...(getObj.contents.analyzers[a.name] || {})
- }
- }))
- .reduce((o, ana) => ({...o, ...ana}), {...getObj.contents.analyzers});
-
- const paramAlgs = Object.entries({...blocks, ...analyzers})
- .map(([bName, block]) => algs.find(a => a.name === block.algorithm))
- .filter(a => a !== null && a !== undefined && a.contents.parameters !== undefined && Object.keys(a.contents.parameters).length > 0)
- .map(a => ({
- [a.name]: Object.entries(a.contents.parameters)
- .map(([pName, param]) => ({[pName]: expGetDefaultParameterValue(param)}))
- .reduce((o, p) => ({...o, ...p}), {})
- }))
- .reduce((o, p) => ({...o, ...p}), {});
- ;
-
- const globals = {
- queue: 'Default',
- environment: {
- version: '0.0.4',
- name: 'Scientific Python 2.7'
- },
- ...paramAlgs,
- ...getObj.contents.globals
- };
-
-
- const obj = {
- ...getObj,
- contents: {
- description: '',
- ...getObj.contents,
- globals,
- datasets,
- blocks,
- analyzers,
- },
- };
-
- return obj;
-};
-
-export const getValidLibraryObj = (data: BeatObject = {name: '', contents: {}}) => {
- const getObj = {
- name: '',
- contents: {},
- ...copyObj(data)
- };
-
- const obj = {
- ...getObj,
- contents: {
- 'description': '',
- 'language': 'python',
- 'uses': {},
- ...getObj.contents,
- },
- };
-
- return obj;
-};
-
-export const getValidToolchainObj = (data: BeatObject = {name: '', contents: {}}) => {
- const getObj = {
- name: '',
- contents: {},
- extraContents: {},
- ...copyObj(data)
- };
-
- const obj = {
- ...getObj,
- contents: {
- 'description': '',
- datasets: [],
- blocks: [],
- analyzers: [],
- connections: [],
- representation: {
- connections: {},
- blocks: {},
- channel_colors: {},
- },
- ...getObj.contents,
- },
- extraContents: {
- groups: [],
- ...getObj.extraContents
- }
- };
-
- return obj;
-};
-
-export const getValidPlotterObj = (data: BeatObject = {name: '', contents: {}}) => {
- const getObj = {
- name: '',
- contents: {},
- ...copyObj(data)
- };
-
- const obj = {
- ...getObj,
- contents: {
- description: '',
- language: 'python',
- parameters: {},
- dataformat: '',
- uses: {},
- ...getObj.contents,
- }
- };
-
- return obj;
-};
-
-export const getValidPlotterparameterObj = (data: BeatObject = {name: '', contents: {}}) => {
- const getObj = {
- name: '',
- contents: {},
- ...copyObj(data)
- };
-
- const obj = {
- ...getObj,
- contents: {
- description: '',
- ...getObj.contents,
- }
- };
-
- return obj;
-};
diff --git a/conda/js/src/helpers/beat.spec.js b/conda/js/src/helpers/beat.spec.js
deleted file mode 100644
index 9b4e62f0701f6c4d570d078dffd9be82ff3f6dca..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/beat.spec.js
+++ /dev/null
@@ -1,21 +0,0 @@
-// @flow
-import { expect } from 'chai';
-import sinon from 'sinon';
-import { spies } from '@test';
-import { nameValidator } from './beat.js';
-
-describe('nameValidator', () => {
- describe('database names', () => {
- let be = 'database';
- let otherNames = [];
- it('should not accept names with a "-" character', () => {
- expect(nameValidator(be, otherNames)('replay-me/1')).to.equal(false);
- });
- it('should accept names with a "_" character', () => {
- expect(nameValidator(be, otherNames)('replay_me/1')).to.equal(true);
- });
- it('should accept names with only ascii characters', () => {
- expect(nameValidator(be, otherNames)('replayme/1')).to.equal(true);
- });
- });
-});
diff --git a/conda/js/src/helpers/index.js b/conda/js/src/helpers/index.js
deleted file mode 100644
index 34ab4b3a1dbe43a1a3d2e97c1e53cbd3d1c20f36..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/index.js
+++ /dev/null
@@ -1,58 +0,0 @@
-// @flow
-// basic helpers - common bits of code refactored to DRY
-import copy from 'fast-copy';
-export { debounce, throttle } from 'throttle-debounce';
-
-// changes a field in an object to a different name
-// only required because keys are often mutable
-export const changeObjFieldName = (obj: {}, oldName: string, newName: string): {} => {
- return Object.entries(obj)
- .map(([name, val]) => [name === oldName ? newName : name, val])
- .reduce((o, [name, val]) => ({...o, [name]: val}), {});
-};
-
-// generates a new unique key given a prefix (like "value" or "param") and possibly conflicting keys
-export const generateNewKey = (keyPrefix: string = '', existingKeys: string[]) => {
- if(!existingKeys.includes(keyPrefix))
- return keyPrefix;
- let newKey = '';
- let v = 0;
- while(true) {
- const tryKey = `${ keyPrefix }${ v }`;
- if(existingKeys.includes(tryKey)){
- v++;
- continue;
- }
- newKey = tryKey;
- break;
- }
-
- return newKey;
-};
-
-/*
- * Generates a random "bright" colour, ignoring extreme values (very close to white/black).
- * Adapted from https://stackoverflow.com/a/1484514
- */
-export const getRandomBrightColor = () => {
- var letters = '789ABCD';
- var color = '#';
- for (var i = 0; i < 6; i++) {
- color += letters[Math.floor(Math.random() * letters.length)];
- }
- return color;
-};
-
-// recursively sorts an object's keys in alphabetical order
-// useful for comparing (deeply nested) objects in stringified form.
-// probably would be better to use another dep specialized in deeply comparing objects?
-export const sortObject = (o: any) => Object.entries(o)
-.sort(([n1, v1], [n2, v2]) => n1 > n2 ? 1 : -1)
-.reduce((o, [n, v]) => ({...o, [n]: Object((v: any)) === v ? sortObject(v) : v}), {});
-
-export const copyObj = (any: any) => {
- return copy(any);
-};
-
-export type GenericObject = {[string]: any};
-export type StringObject = {[string]: string};
diff --git a/conda/js/src/helpers/schema/algorithm.json b/conda/js/src/helpers/schema/algorithm.json
deleted file mode 100644
index 55609d747fac34b7e51d5bf88005992e302242ef..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/algorithm.json
+++ /dev/null
@@ -1,226 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "algorithm",
- "title": "Algorithm descriptor",
- "description": "This schema defines the properties of an algorithm",
-
- "oneOf": [
- { "$ref": "#/definitions/block" },
- { "$ref": "#/definitions/analyzer" }
- ],
-
- "definitions": {
-
- "endpoints": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "type": "object",
- "properties": {
- "type": { "$ref": "common#/definitions/reference" },
- "description": { "type": "string" }
- },
- "required": [
- "type"
- ],
- "additionalProperties": false
- }
- },
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "io_group": {
- "type": "object",
- "properties": {
- "name": { "type": "string" },
- "inputs": { "$ref": "#/definitions/endpoints" },
- "outputs": { "$ref": "#/definitions/endpoints" }
- },
- "required": [
- "inputs",
- "outputs"
- ],
- "additionalProperties": false
- },
-
- "input_group": {
- "type": "object",
- "properties": {
- "name": { "type": "string" },
- "inputs": { "$ref": "#/definitions/endpoints" }
- },
- "required": [
- "inputs"
- ],
- "additionalProperties": false
- },
-
- "block_groups": {
- "type": "array",
- "items": [
- { "$ref": "#/definitions/io_group" }
- ],
- "additionalItems": { "$ref": "#/definitions/input_group" },
- "minItems": 1
- },
-
- "range": {
- "type": "array",
- "items": { "$ref": "common#/definitions/value" },
- "minItems": 2,
- "maxItems": 2
- },
-
- "choice": {
- "type": "array",
- "items": { "$ref": "common#/definitions/value" },
- "minItems": 2
- },
-
- "parameter": {
- "type": "object",
- "properties": {
- "type": { "$ref": "common#/definitions/basetype" },
- "default": { "$ref": "common#/definitions/value" },
- "description": { "type": "string" }
- },
- "required": [
- "type"
- ]
- },
-
- "range_parameter": {
- "allOf": [
- { "$ref": "#/definitions/parameter" },
- {
- "properties": {
- "range": { "$ref": "#/definitions/range" }
- },
- "required": [
- "range"
- ]
- }
- ],
- "additionalProperties": false
- },
-
- "choice_parameter": {
- "allOf": [
- { "$ref": "#/definitions/parameter" },
- {
- "properties": {
- "choice": { "$ref": "#/definitions/choice" }
- },
- "required": [
- "choice"
- ]
- }
- ],
- "additionalProperties": false
- },
-
- "parameters": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "oneOf": [
- { "$ref": "#/definitions/parameter" },
- { "$ref": "#/definitions/range_parameter" },
- { "$ref": "#/definitions/choice_parameter" }
- ]
- }
- },
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "block": {
-
- "type": "object",
-
- "properties": {
- "language": { "$ref": "common#/definitions/language" },
- "description": { "$ref": "common#/definitions/description" },
- "groups": { "$ref": "#/definitions/block_groups" },
- "parameters": { "$ref": "#/definitions/parameters" },
- "splittable": { "type": "boolean" },
- "uses": { "$ref": "common#/definitions/uses" },
- "schema_version": { "$ref": "common#/definitions/version" }
-
- },
-
- "required": [
- "language",
- "groups",
- "splittable"
- ],
-
- "additionalProperties": false
-
- },
-
- "analyzer_groups": {
- "type": "array",
- "items": { "$ref": "#/definitions/input_group" },
- "minItems": 1
- },
-
- "resulttype": {
- "oneOf": [
- { "type": "string", "enum": [ "int32", "float32", "bool", "string" ] },
- { "type": "string", "pattern": "^system/[a-zA-Z0-9_-]+/[0-9]+$" },
- { "type": "string", "pattern": "^plot/[a-zA-Z0-9_-]+/[0-9]+$" }
- ]
- },
-
- "result": {
- "type": "object",
- "properties": {
- "type": { "$ref": "#/definitions/resulttype" },
- "display": { "type": "boolean" },
- "description": { "type": "string" }
- },
- "required": [
- "type"
- ],
- "additionalProperties": false
- },
-
- "results": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "$ref": "#/definitions/result"
- }
- },
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "analyzer": {
-
- "type": "object",
-
- "properties": {
- "language": { "$ref": "common#/definitions/language" },
- "description": { "$ref": "common#/definitions/description" },
- "groups": { "$ref": "#/definitions/analyzer_groups" },
- "parameters": { "$ref": "#/definitions/parameters" },
- "results": { "$ref": "#/definitions/results" },
- "uses": { "$ref": "common#/definitions/uses" },
- "schema_version": { "$ref": "common#/definitions/version" }
- },
-
- "required": [
- "language",
- "groups",
- "results"
- ],
-
- "additionalProperties": false
- }
-
- }
-
-}
diff --git a/conda/js/src/helpers/schema/common.json b/conda/js/src/helpers/schema/common.json
deleted file mode 100644
index b9443dce609562ba26cb19171f40215cfeced658..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/common.json
+++ /dev/null
@@ -1,78 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "common",
- "title": "Common definitions for BEAT",
- "description": "This schema defines common properties of a BEAT objects",
-
- "definitions": {
-
- "reference": {
- "type": "string",
- "pattern": "^[a-zA-Z_][a-zA-Z0-9_-]*/[a-zA-Z0-9_-]+/[0-9]+$"
- },
-
- "basetype": {
- "type": "string",
- "enum": [
- "int8",
- "int16",
- "int32",
- "int64",
- "uint8",
- "uint16",
- "uint32",
- "uint64",
- "float32",
- "float64",
- "complex64",
- "complex128",
- "bool",
- "string"
- ]
- },
-
- "value": {
- "oneOf": [
- { "type": "string" },
- { "type": "number" },
- { "type": "boolean" }
- ]
- },
-
- "description": {
- "type": "string"
- },
-
- "language": {
-
- "type": "string",
- "enum": [
- "unknown",
- "python",
- "cxx",
- "matlab",
- "r"
- ]
-
- },
-
- "uses": {
- "type": "object",
- "uniqueItems": true,
- "additionalProperties": false,
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_]*$": {
- "$ref": "#/definitions/reference"
- }
- }
- },
-
- "version": {
- "type": "number",
- "multipleOf": 1.0,
- "minimum": 1.0
- }
-
- }
-
-}
diff --git a/conda/js/src/helpers/schema/database.json b/conda/js/src/helpers/schema/database.json
deleted file mode 100644
index d8a1cb0a20ae60083950eb345616369397586c52..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/database.json
+++ /dev/null
@@ -1,117 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "database",
- "title": "Database descriptor",
- "description": "This schema defines the properties of a BEAT database",
-
- "type": "object",
-
- "properties": {
-
- "root_folder": {
- "type": "string",
- "pattern": "^(/[^/]+)+$"
- },
-
- "protocols": {
- "type": "array",
- "minItems": 1,
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/protocol" }
- },
-
- "description": { "$ref": "common#/definitions/description" },
-
- "schema_version": { "$ref": "common#/definitions/version" }
-
- },
-
- "required": [
- "root_folder",
- "protocols"
- ],
-
- "additionalProperties": false,
-
- "definitions": {
-
- "identifier": {
- "type": "string",
- "pattern": "^[a-zA-Z0-9_-]+$"
- },
-
- "view": {
- "type": "string",
- "pattern": "^[a-zA-Z_][a-zA-Z0-9_]*$"
- },
-
- "protocol": {
- "type": "object",
- "properties": {
- "name": { "$ref": "#/definitions/protocol_name" },
- "template": { "$ref": "#/definitions/identifier" },
- "sets": {
- "type": "array",
- "minItems": 1,
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/set" }
- }
- },
- "required": ["name", "template", "sets"],
- "additionalProperties": false
- },
-
- "protocol_name": {
- "type": "string",
- "pattern": "^[a-zA-Z0-9_][\\.a-zA-Z0-9_-]*$"
- },
-
- "set": {
- "type": "object",
- "properties": {
- "name": { "$ref": "#/definitions/identifier" },
- "template": { "$ref": "#/definitions/identifier" },
- "view": { "$ref": "#/definitions/view" },
- "parameters": { "$ref": "#/definitions/parameters" },
- "outputs": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "$ref": "common#/definitions/reference"
- }
- },
- "minProperties": 0,
- "uniqueItems": true,
- "additionalProperties": false
- }
- },
- "required": ["name", "view", "outputs"],
- "additionalProperties": false
- },
-
- "parameters": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "$ref": "#/definitions/parameter_value"
- }
- }
- },
-
- "parameter_value": {
- "oneOf": [
- {
- "type": "string"
- },
- {
- "type": "number"
- },
- {
- "type": "boolean"
- }
- ]
- }
-
- }
-
-}
diff --git a/conda/js/src/helpers/schema/dataformat.json b/conda/js/src/helpers/schema/dataformat.json
deleted file mode 100644
index e244fd7c0fc6100e9e578805b85505d981e7a5ff..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/dataformat.json
+++ /dev/null
@@ -1,131 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "dataformat",
- "title": "Dataformat descriptor",
- "description": "This schema defines the properties of a data format",
-
- "type": "object",
-
- "properties": {
- "#extends": { "$ref": "common#/definitions/reference" },
- "#description": { "$ref": "common#/definitions/description" },
- "#schema_version": { "$ref": "common#/definitions/version" }
- },
-
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "oneOf": [
- { "$ref": "common#/definitions/basetype" },
- { "$ref": "#/definitions/array1d" },
- { "$ref": "#/definitions/array2d" },
- { "$ref": "#/definitions/array3d" },
- { "$ref": "#/definitions/array4d" },
- { "$ref": "#/definitions/array5d" },
- { "$ref": "common#/definitions/reference" },
- { "$ref": "#" }
- ]
- }
- },
-
- "additionalProperties": false,
-
- "definitions": {
-
- "array1d": {
- "type": "array",
- "minItems": 2,
- "maxItems": 2,
- "items": [
- { "type": "integer" },
- {
- "oneOf": [
- { "$ref": "common#/definitions/basetype" },
- { "$ref": "common#/definitions/reference" },
- { "$ref": "#" }
- ]
- }
- ],
- "additionalItems": false
- },
-
- "array2d": {
- "type": "array",
- "minItems": 3,
- "maxItems": 3,
- "items": [
- { "type": "integer" },
- { "type": "integer" },
- {
- "oneOf": [
- { "$ref": "common#/definitions/basetype" },
- { "$ref": "common#/definitions/reference" },
- { "$ref": "#" }
- ]
- }
- ],
- "additionalItems": false
- },
-
- "array3d": {
- "type": "array",
- "minItems": 4,
- "maxItems": 4,
- "items": [
- { "type": "integer" },
- { "type": "integer" },
- { "type": "integer" },
- {
- "oneOf": [
- { "$ref": "common#/definitions/basetype" },
- { "$ref": "common#/definitions/reference" },
- { "$ref": "#" }
- ]
- }
- ],
- "additionalItems": false
- },
-
- "array4d": {
- "type": "array",
- "minItems": 5,
- "maxItems": 5,
- "items": [
- { "type": "integer" },
- { "type": "integer" },
- { "type": "integer" },
- { "type": "integer" },
- {
- "oneOf": [
- { "$ref": "common#/definitions/basetype" },
- { "$ref": "common#/definitions/reference" },
- { "$ref": "#" }
- ]
- }
- ],
- "additionalItems": false
- },
-
- "array5d": {
- "type": "array",
- "minItems": 6,
- "maxItems": 6,
- "items": [
- { "type": "integer" },
- { "type": "integer" },
- { "type": "integer" },
- { "type": "integer" },
- { "type": "integer" },
- {
- "oneOf": [
- { "$ref": "common#/definitions/basetype" },
- { "$ref": "common#/definitions/reference" },
- { "$ref": "#" }
- ]
- }
- ],
- "additionalItems": false
- }
-
- }
-
-}
diff --git a/conda/js/src/helpers/schema/execution.json b/conda/js/src/helpers/schema/execution.json
deleted file mode 100644
index c6e0fa820e2f963a0a040e7c8de74dfe7abd5f15..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/execution.json
+++ /dev/null
@@ -1,201 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "execution",
- "title": "Single algorithm execution descriptor",
- "description": "This schema defines the properties of an execution block",
-
- "oneOf": [
- { "$ref": "#/definitions/block" },
- { "$ref": "#/definitions/analyzer" }
- ],
-
- "definitions": {
-
- "hash": {
- "type": "string",
- "pattern": "^[a-fA-F0-9]{64}$"
- },
-
- "cache_path": {
- "type": "string",
- "pattern": "^[a-fA-F0-9]{2}/[a-fA-F0-9]{2}/[a-fA-F0-9]{2}/[a-fA-F0-9]{58}$"
- },
-
- "cache_input": {
- "type": "object",
- "properties": {
- "path": { "$ref": "#/definitions/cache_path" },
- "hash": { "$ref": "#/definitions/hash" },
- "channel": { "$ref": "database#/definitions/identifier" },
- "endpoint": { "$ref": "toolchain#/definitions/identifier" }
- },
- "required": [
- "path",
- "hash",
- "channel",
- "endpoint"
- ],
- "additionalProperties": false
- },
-
- "dataset_input": {
- "type": "object",
- "properties": {
- "database": {
- "$ref": "experiment#/definitions/versioned_database"
- },
- "protocol": { "$ref": "database#/definitions/protocol_name" },
- "set": { "$ref": "database#/definitions/identifier" },
- "output": { "$ref": "toolchain#/definitions/identifier" },
- "channel": { "$ref": "database#/definitions/identifier" },
- "path": { "$ref": "#/definitions/cache_path" },
- "hash": { "$ref": "#/definitions/hash" },
- "endpoint": { "$ref": "toolchain#/definitions/identifier" }
- },
- "required": [
- "database",
- "protocol",
- "set",
- "output",
- "channel",
- "hash",
- "path",
- "endpoint"
- ],
- "additionalProperties": false
- },
-
- "input": {
- "oneOf": [
- { "$ref": "#/definitions/cache_input" },
- { "$ref": "#/definitions/dataset_input" }
- ]
- },
-
- "output": {
- "type": "object",
- "properties": {
- "path": { "$ref": "#/definitions/cache_path" },
- "hash": { "$ref": "#/definitions/hash" },
- "channel": { "$ref": "database#/definitions/identifier" },
- "endpoint": { "$ref": "toolchain#/definitions/identifier" }
- },
- "required": [
- "path",
- "hash",
- "channel",
- "endpoint"
- ],
- "additionalProperties": false
- },
-
- "input_map": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_]*$": {
- "$ref": "#/definitions/input"
- }
- },
- "minProperties": 1,
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "range_value": {
- "oneOf": [
- { "type": "null" },
- {
- "type": "number",
- "multipleOf": 1.0,
- "minimum": 0.0
- }
- ]
- },
-
- "range": {
- "type": "array",
- "minItems": 2,
- "maxItems": 2,
- "items": { "$ref": "#/definitions/range_value" }
- },
-
- "element": {
- "type": "object",
- "properties": {
- "inputs": { "$ref": "#/definitions/input_map" },
- "channel": { "$ref": "database#/definitions/identifier" },
- "algorithm": { "$ref": "common#/definitions/reference" },
- "parameters": { "$ref": "experiment#/definitions/parameter_set" },
- "queue": { "$ref": "experiment#/definitions/queue" },
- "environment": { "$ref": "experiment#/definitions/environment" },
- "range": { "$ref": "#/definitions/range" },
- "schema_version": { "$ref": "common#/definitions/version" }
- },
- "required": [
- "inputs",
- "channel",
- "algorithm",
- "parameters",
- "queue",
- "environment"
- ]
- },
-
- "output_map": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_]*$": {
- "$ref": "#/definitions/output"
- }
- },
- "minProperties": 1,
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "block": {
- "allOf": [
- { "$ref": "#/definitions/element" },
- {
- "properties": {
- "outputs": { "$ref": "#/definitions/output_map" },
- "nb_slots": { "$ref": "experiment#/definitions/slots" }
- },
- "required": [
- "outputs",
- "nb_slots"
- ]
- }
- ]
- },
-
- "result": {
- "type": "object",
- "properties": {
- "path": { "$ref": "#/definitions/cache_path" },
- "hash": { "$ref": "#/definitions/hash" }
- },
- "required": [
- "path",
- "hash"
- ],
- "additionalProperties": false
- },
-
- "analyzer": {
- "allOf": [
- { "$ref": "#/definitions/element" },
- {
- "properties": {
- "result": { "$ref": "#/definitions/result" }
- },
- "required": [
- "result"
- ]
- }
- ]
- }
-
- }
-
-}
diff --git a/conda/js/src/helpers/schema/experiment.json b/conda/js/src/helpers/schema/experiment.json
deleted file mode 100644
index dd909cfd77528d5d26150407ab3e1393d85da3a4..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/experiment.json
+++ /dev/null
@@ -1,177 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "experiment",
- "title": "Experiment descriptor",
- "description": "This schema defines the properties of a experiment",
-
- "type": "object",
-
- "properties": {
-
- "description": { "$ref": "common#/definitions/description" },
-
- "datasets": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": { "$ref": "#/definitions/dataset" }
- },
- "minProperties": 1,
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "blocks": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": { "$ref": "#/definitions/block" }
- },
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "analyzers": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": { "$ref": "#/definitions/analyzer" }
- },
- "minProperties": 1,
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "globals": {
- "type": "object",
- "properties": {
- "queue": { "$ref": "#/definitions/queue" },
- "environment": { "$ref": "#/definitions/environment" }
- },
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_]*/[a-zA-Z_][a-zA-Z0-9_-]*/[0-9]+$": {
- "$ref": "#/definitions/parameter_set"
- }
- },
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "schema_version": { "$ref": "common#/definitions/version" }
-
- },
-
- "required": [
- "datasets",
- "blocks",
- "analyzers",
- "globals"
- ],
-
- "additionalProperties": false,
-
- "definitions": {
-
- "queue": {
- "type": "string"
- },
-
- "environment": {
- "type": "object",
- "properties": {
- "name": { "type": "string" },
- "version": { "type": "string" }
- },
- "required": [
- "name",
- "version"
- ],
- "additionalProperties": false
- },
-
- "slots": {
- "type": "integer",
- "minimum": 1,
- "exclusiveMinimum": false
- },
-
- "versioned_database": {
- "type": "string",
- "pattern": "^[a-zA-Z_][a-zA-Z0-9_]*/[0-9]+$"
- },
-
- "dataset": {
- "type": "object",
- "properties": {
- "set": { "$ref": "database#/definitions/identifier" },
- "protocol": { "$ref": "database#/definitions/protocol_name" },
- "database": { "$ref": "#/definitions/versioned_database" }
- },
- "required": [
- "set",
- "protocol",
- "database"
- ],
- "additionalProperties": false
- },
-
- "connection_map": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_]*$": {
- "$ref": "toolchain#/definitions/identifier"
- }
- },
- "minProperties": 1,
- "uniqueItems": true,
- "additionalProperties": false
- },
-
- "block": {
- "type": "object",
- "properties": {
- "inputs": { "$ref": "#/definitions/connection_map" },
- "outputs": { "$ref": "#/definitions/connection_map" },
- "algorithm": { "$ref": "common#/definitions/reference" },
- "parameters": { "$ref": "#/definitions/parameter_set" },
- "queue": { "$ref": "#/definitions/queue" },
- "environment": { "$ref": "#/definitions/environment" },
- "nb_slots": { "$ref": "#/definitions/slots" }
- },
- "required": [
- "inputs",
- "outputs",
- "algorithm"
- ],
- "additionalProperties": false
- },
-
- "analyzer": {
- "type": "object",
- "properties": {
- "inputs": { "$ref": "#/definitions/connection_map" },
- "algorithm": { "$ref": "common#/definitions/reference" },
- "parameters": { "$ref": "#/definitions/parameter_set" },
- "queue": { "$ref": "#/definitions/queue" },
- "environment": { "$ref": "#/definitions/environment" },
- "nb_slots": { "$ref": "#/definitions/slots" }
- },
- "required": [
- "inputs",
- "algorithm"
- ],
- "additionalProperties": false
- },
-
- "parameter_set": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "$ref": "common#/definitions/value"
- }
- },
- "minProperties": 0,
- "uniqueItems": true,
- "additionalProperties": false
- }
-
- }
-
-}
diff --git a/conda/js/src/helpers/schema/index.js b/conda/js/src/helpers/schema/index.js
deleted file mode 100644
index 03e33d6e88fab73f6fbf1c9e8df41ada3346cbd3..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/index.js
+++ /dev/null
@@ -1,44 +0,0 @@
-import Ajv from 'ajv';
-
-import common from './common.json';
-import dataformat from './dataformat.json';
-import database from './database.json';
-import library from './library.json';
-import algorithm from './algorithm.json';
-import toolchain from './toolchain.json';
-import experiment from './experiment.json';
-import execution from './execution.json';
-import plotter from './plotter.json';
-import plotterparameter from './plotterparameter.json';
-import draft04 from 'ajv/lib/refs/json-schema-draft-04.json';
-
-const ajv = new Ajv({ allErrors: true, schemaId: 'id' });
-ajv.addMetaSchema(draft04);
-ajv.addSchema([common, dataformat, database, library, algorithm, toolchain, experiment, plotter, plotterparameter, execution]);
-
-export const VALIDATORS = {
- dataformat: ajv.compile(dataformat),
- database: ajv.compile(database),
- library: ajv.compile(library),
- algorithm: ajv.compile(algorithm),
- toolchain: ajv.compile(toolchain),
- experiment: ajv.compile(experiment),
- plotter: ajv.compile(plotter),
- plotterparameter: ajv.compile(plotterparameter),
- execution: ajv.compile(execution),
-};
-Object.freeze(VALIDATORS);
-
-export default function validate(validator, obj) {
- const isValid = validator(obj.contents || obj);
- const errs = validator.errors;
- /*
- if(!isValid) {
- console.error(`Object "${ obj.name || obj }" not valid!:`);
- console.log(obj);
- console.log(validator.errors);
- }
- */
-
- return isValid ? false : errs;
-}
diff --git a/conda/js/src/helpers/schema/library.json b/conda/js/src/helpers/schema/library.json
deleted file mode 100644
index 2a5f0021fd142a96e325f6ef8fa31faae4c2f3ed..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/library.json
+++ /dev/null
@@ -1,20 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "library",
- "title": "Library descriptor",
- "description": "This schema defines the properties of a library",
-
- "type": "object",
-
- "required": [
- "language"
- ],
-
- "properties": {
- "language": { "$ref": "common#/definitions/language" },
- "description": { "$ref": "common#/definitions/description" },
- "uses": { "$ref": "common#/definitions/uses" },
- "schema_version": { "$ref": "common#/definitions/version" }
- },
- "additionalProperties": false
-}
diff --git a/conda/js/src/helpers/schema/plotter.json b/conda/js/src/helpers/schema/plotter.json
deleted file mode 100644
index f5d32f2bd3fce1061d87a75e48a06e83a8858d84..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/plotter.json
+++ /dev/null
@@ -1,28 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "plotter",
- "title": "Plotting algorithm descriptor",
- "description": "This schema defines the properties of a plotting algorithm",
-
- "type": "object",
-
- "properties": {
- "language": { "$ref": "common#/definitions/language" },
- "description": { "$ref": "common#/definitions/description" },
- "parameters": { "$ref": "algorithm#/definitions/parameters" },
- "dataformat": {
- "type": "string",
- "pattern": "^plot/[a-zA-Z0-9_-]+/[0-9]+$"
- },
- "uses": { "$ref": "common#/definitions/uses" },
- "schema_version": { "$ref": "common#/definitions/version" }
- },
-
- "required": [
- "language",
- "parameters",
- "dataformat"
- ],
-
- "additionalProperties": false
-}
diff --git a/conda/js/src/helpers/schema/plotterparameter.json b/conda/js/src/helpers/schema/plotterparameter.json
deleted file mode 100644
index 59760635cd341736e004d2856265cacf5c7abc18..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/plotterparameter.json
+++ /dev/null
@@ -1,21 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "plotterparameter",
- "title": "Plotter configurator descriptor",
- "description": "This schema defines the properties of an instance of a plot configuration",
-
- "type": "object",
-
- "properties": {
- "description": {
- "type": "string"
- },
- "plotter": {
- "$ref": "common#/definitions/reference"
- },
- "data": {
- "$ref": "experiment#/definitions/parameter_set"
- }
- },
- "required": ["plotter"]
-}
diff --git a/conda/js/src/helpers/schema/toolchain.json b/conda/js/src/helpers/schema/toolchain.json
deleted file mode 100644
index 7c14cc86a2fc578097209679478937e1ba6a9dc5..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/schema/toolchain.json
+++ /dev/null
@@ -1,215 +0,0 @@
-{
- "$schema": "http://json-schema.org/draft-04/schema#",
- "id": "toolchain",
- "title": "Toolchain descriptor",
- "description": "This schema defines the properties of a toolchain",
-
- "type": "object",
-
- "properties": {
-
- "description": { "$ref": "common#/definitions/description" },
-
- "datasets": {
- "type": "array",
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/dataset" }
- },
-
- "blocks": {
- "type": "array",
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/block" }
- },
-
- "analyzers": {
- "type": "array",
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/analyzer" }
- },
-
- "connections": {
- "type": "array",
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/connection" }
- },
-
- "representation": {
-
- "type": "object",
-
- "properties": {
-
- "connections": {
- "$ref": "#/definitions/representation/connections"
- },
- "blocks": {
- "$ref": "#/definitions/representation/blocks"
- },
- "channel_colors": {
- "$ref": "#/definitions/representation/channel_colors"
- }
-
- },
-
- "required": [
- "connections",
- "blocks",
- "channel_colors"
- ],
-
- "additionalProperties": false
-
- },
-
- "schema_version": { "$ref": "common#/definitions/version" }
-
- },
-
- "required": [
- "datasets",
- "blocks",
- "analyzers",
- "connections",
- "representation"
- ],
-
- "additionalProperties": false,
-
- "definitions": {
-
- "identifier": {
- "type": "string",
- "pattern": "^[a-zA-Z_][a-zA-Z0-9_-]*$"
- },
-
- "dataset": {
- "type": "object",
- "properties": {
- "name": { "$ref": "database#/definitions/identifier" },
- "outputs": {
- "type": "array",
- "minItems": 1,
- "uniqueItems": true,
- "items": { "$ref": "database#/definitions/identifier" }
- }
- },
- "required": ["name", "outputs"],
- "additionalProperties": false
- },
-
- "block": {
- "type": "object",
- "properties": {
- "name": { "$ref": "#/definitions/identifier" },
- "synchronized_channel": {
- "$ref": "database#/definitions/identifier"
- },
- "inputs": {
- "type": "array",
- "minItems": 1,
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/identifier" }
- },
- "outputs": {
- "type": "array",
- "minItems": 1,
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/identifier" }
- }
- },
- "required": ["name", "synchronized_channel", "inputs", "outputs"],
- "additionalProperties": false
- },
-
- "analyzer": {
- "type": "object",
- "properties": {
- "name": { "$ref": "#/definitions/identifier" },
- "synchronized_channel": {
- "$ref": "database#/definitions/identifier"
- },
- "inputs": {
- "type": "array",
- "minItems": 1,
- "uniqueItems": true,
- "items": { "$ref": "#/definitions/identifier" }
- }
- },
- "required": ["name", "synchronized_channel", "inputs"],
- "additionalProperties": false
- },
-
- "endpoint": {
- "type": "string",
- "pattern": "^[a-zA-Z_][a-zA-Z0-9_-]*.[a-zA-Z_][a-zA-Z0-9_-]*$"
- },
-
- "connection": {
- "type": "object",
- "properties": {
- "from": { "$ref": "#/definitions/endpoint" },
- "to": { "$ref": "#/definitions/endpoint" },
- "channel": { "$ref": "#/definitions/identifier" }
- },
- "required": ["from", "to", "channel"],
- "additionalProperties": false,
- "definitions": {
- }
- },
-
- "representation": {
-
- "connections": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*.[a-zA-Z_][a-zA-Z0-9_-]*/[a-zA-Z_][a-zA-Z0-9_-]*.[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "type": "array",
- "items": {
- "type": "object",
- "properties": {
- "col": { "type": "integer" },
- "row": { "type": "integer" }
- },
- "required": [ "col", "row" ],
- "additionalProperties": false
- }
- }
- },
- "additionalProperties": false
- },
-
- "blocks": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "type": "object",
- "properties": {
- "col": { "type": "integer" },
- "row": { "type": "integer" },
- "width": { "type": "integer" },
- "height": { "type": "integer" }
- },
- "required": [ "col", "row", "width", "height" ],
- "additionalProperties": false
- }
- },
- "additionalProperties": false
- },
-
- "channel_colors": {
- "type": "object",
- "patternProperties": {
- "^[a-zA-Z_][a-zA-Z0-9_-]*$": {
- "type": "string",
- "pattern": "^#[0-9a-fA-F]{6}$"
- }
- },
- "additionalProperties": false
- }
-
- }
-
- }
-
-}
diff --git a/conda/js/src/helpers/search.worker.js b/conda/js/src/helpers/search.worker.js
deleted file mode 100644
index ac1fed2f0d2a99315d14ffa4ee8772e0f8cea805..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/search.worker.js
+++ /dev/null
@@ -1,41 +0,0 @@
-// @flow
-/*
- * Uses Fuse.js to provide a fast & async search provider as a SharedWorker
- */
-
-import Fuse from 'fuse.js';
-
-declare var self: DedicatedWorkerGlobalScope;
-
-let fuse;
-let searchData;
-
-const updateFuseInstance = ({ data, options }) => {
- searchData = data;
- fuse = new Fuse(searchData, options);
-};
-
-const search = str => {
- if(fuse && searchData)
- return fuse.search(str);
- else if(!searchData)
- throw new Error(`searchData is not instantiated!`);
- else if(!fuse)
- throw new Error(`fuse is not instantiated!`);
-};
-
-self.onmessage = (msg: any) => {
- const { type, payload } = msg.data;
- switch (type) {
- case 'dataChanged':
- updateFuseInstance(payload);
- break;
- case 'search':
- const result = search(payload);
- self.postMessage(result);
- break;
- default:
- console.error(`SearchWorker got undefined message: ${ type } with payload ${ payload }`);
- break;
- }
-};
diff --git a/conda/js/src/helpers/toolchainTypes.js b/conda/js/src/helpers/toolchainTypes.js
deleted file mode 100644
index 9e5c586f15b0c215b84cb971f29da1a6945f9a9c..0000000000000000000000000000000000000000
--- a/conda/js/src/helpers/toolchainTypes.js
+++ /dev/null
@@ -1,65 +0,0 @@
-// @flow
-export type ConnectionType = {|
- from: string,
- to: string,
- channel: string,
-|};
-
-export type NormalBlock = {|
- inputs: string[],
- outputs: string[],
- synchronized_channel: string,
- name: string,
-|};
-
-export type DatasetBlock = {|
- outputs: string[],
- name: string,
-|};
-
-export type AnalyzerBlock = {|
- inputs: string[],
- synchronized_channel: string,
- name: string,
-|};
-
-export type BlockType = NormalBlock | DatasetBlock | AnalyzerBlock;
-
-export type BlockSet = 'analyzers' | 'blocks' | 'datasets';
-
-export type BlockCoords = {|
- x: number,
- y: number,
- height: number,
- width: number,
-|};
-
-
-export type Group = {|
- name: string,
- blocks: string[],
- collapsed: boolean,
-|};
-
-export type LocationMapEntry = {|
- block: BlockCoords,
- inputs?: { [string]: BlockCoords },
- outputs?: { [string]: BlockCoords },
-|};
-
-export type LocationMap = {|
- [string]: LocationMapEntry,
-|};
-
-export type Contents = {|
- description: string,
- datasets: DatasetBlock[],
- blocks: NormalBlock[],
- analyzers: AnalyzerBlock[],
- connections: ConnectionType[],
- representation: {
- blocks: { [string]: BlockCoords },
- channel_colors: { [string]: string },
- connections: { [string]: any[] },
- }
-|};
diff --git a/conda/js/src/store/actionTypes.js b/conda/js/src/store/actionTypes.js
deleted file mode 100644
index 025b0004e8a98caa28bce12985400e2f0e65a2a7..0000000000000000000000000000000000000000
--- a/conda/js/src/store/actionTypes.js
+++ /dev/null
@@ -1,65 +0,0 @@
-// @flow
-// the action types (constants) are defined here
-// if you want to add one, youll need to add the constant string to the ActionType below
-// and also add a line for the constant
-export type ActionType = 'FETCH_ALL'
-| 'SAVE_DATABASE' | 'ADD_DATABASE' | 'DELETE_DATABASE' | 'UPDATE_DATABASE'
-| 'SAVE_LIBRARY' | 'ADD_LIBRARY' | 'DELETE_LIBRARY' | 'UPDATE_LIBRARY'
-| 'SAVE_DATAFORMAT' | 'ADD_DATAFORMAT' | 'DELETE_DATAFORMAT' | 'UPDATE_DATAFORMAT'
-| 'SAVE_ALGORITHM' | 'ADD_ALGORITHM' | 'DELETE_ALGORITHM' | 'UPDATE_ALGORITHM'
-| 'SAVE_TOOLCHAIN' | 'ADD_TOOLCHAIN' | 'DELETE_TOOLCHAIN' | 'UPDATE_TOOLCHAIN'
-| 'SAVE_EXPERIMENT' | 'ADD_EXPERIMENT' | 'DELETE_EXPERIMENT' | 'UPDATE_EXPERIMENT'
-| 'SAVE_PLOTTER' | 'ADD_PLOTTER' | 'DELETE_PLOTTER' | 'UPDATE_PLOTTER'
-| 'SAVE_PLOTTERPARAMETER' | 'ADD_PLOTTERPARAMETER' | 'DELETE_PLOTTERPARAMETER' | 'UPDATE_PLOTTERPARAMETER'
-| 'SAVE_SETTINGS' | 'UPDATE_SETTINGS'
-| 'SAVE_ENVIRONMENTS'
-| 'CLEAR_UNSAVED';
-
-export const FETCH_ALL: ActionType = 'FETCH_ALL';
-
-export const SAVE_DATABASE: ActionType = 'SAVE_DATABASE';
-export const ADD_DATABASE: ActionType = 'ADD_DATABASE';
-export const DELETE_DATABASE: ActionType = 'DELETE_DATABASE';
-export const UPDATE_DATABASE: ActionType = 'UPDATE_DATABASE';
-
-export const SAVE_LIBRARY: ActionType = 'SAVE_LIBRARY';
-export const ADD_LIBRARY: ActionType = 'ADD_LIBRARY';
-export const DELETE_LIBRARY: ActionType = 'DELETE_LIBRARY';
-export const UPDATE_LIBRARY: ActionType = 'UPDATE_LIBRARY';
-
-export const SAVE_DATAFORMAT: ActionType = 'SAVE_DATAFORMAT';
-export const ADD_DATAFORMAT: ActionType = 'ADD_DATAFORMAT';
-export const DELETE_DATAFORMAT: ActionType = 'DELETE_DATAFORMAT';
-export const UPDATE_DATAFORMAT: ActionType = 'UPDATE_DATAFORMAT';
-
-export const SAVE_ALGORITHM: ActionType = 'SAVE_ALGORITHM';
-export const ADD_ALGORITHM: ActionType = 'ADD_ALGORITHM';
-export const DELETE_ALGORITHM: ActionType = 'DELETE_ALGORITHM';
-export const UPDATE_ALGORITHM: ActionType = 'UPDATE_ALGORITHM';
-
-export const SAVE_TOOLCHAIN: ActionType = 'SAVE_TOOLCHAIN';
-export const ADD_TOOLCHAIN: ActionType = 'ADD_TOOLCHAIN';
-export const DELETE_TOOLCHAIN: ActionType = 'DELETE_TOOLCHAIN';
-export const UPDATE_TOOLCHAIN: ActionType = 'UPDATE_TOOLCHAIN';
-
-export const SAVE_EXPERIMENT: ActionType = 'SAVE_EXPERIMENT';
-export const ADD_EXPERIMENT: ActionType = 'ADD_EXPERIMENT';
-export const DELETE_EXPERIMENT: ActionType = 'DELETE_EXPERIMENT';
-export const UPDATE_EXPERIMENT: ActionType = 'UPDATE_EXPERIMENT';
-
-export const SAVE_PLOTTER: ActionType = 'SAVE_PLOTTER';
-export const ADD_PLOTTER: ActionType = 'ADD_PLOTTER';
-export const DELETE_PLOTTER: ActionType = 'DELETE_PLOTTER';
-export const UPDATE_PLOTTER: ActionType = 'UPDATE_PLOTTER';
-
-export const SAVE_PLOTTERPARAMETER: ActionType = 'SAVE_PLOTTERPARAMETER';
-export const ADD_PLOTTERPARAMETER: ActionType = 'ADD_PLOTTERPARAMETER';
-export const DELETE_PLOTTERPARAMETER: ActionType = 'DELETE_PLOTTERPARAMETER';
-export const UPDATE_PLOTTERPARAMETER: ActionType = 'UPDATE_PLOTTERPARAMETER';
-
-export const SAVE_ENVIRONMENTS: ActionType = 'SAVE_ENVIRONMENTS';
-
-export const SAVE_SETTINGS: ActionType = 'SAVE_SETTINGS';
-export const UPDATE_SETTINGS: ActionType = 'UPDATE_SETTINGS';
-
-export const CLEAR_UNSAVED: ActionType = 'CLEAR_UNSAVED';
diff --git a/conda/js/src/store/actions.js b/conda/js/src/store/actions.js
deleted file mode 100644
index c6cc7510af9e17a2e805d1a6b74f46af5fb6b4cd..0000000000000000000000000000000000000000
--- a/conda/js/src/store/actions.js
+++ /dev/null
@@ -1,180 +0,0 @@
-// @flow
-/* Actions for Redux
- * all the actions for redux are defined here
- * some actions are actually async action creators for async stuff (API calls)
- * most are pretty simple and tied to a specific BEAT entity
- * each entity has the same actions available, allowing lots of templating stuff
- * these actions specify a type, using the constants in the ActionTypes
-*/
-import type {
- ActionType,
-} from './actionTypes';
-
-import * as Types from './actionTypes.js';
-import type { Dispatch } from 'redux';
-import { genModuleApiFuncs } from '@helpers/api';
-import { BEAT_ENTITIES } from '@helpers/beat';
-
-import type { BeatEntity, BeatObject, BeatSettings, BeatEnvironment } from '@helpers/beat';
-
-export type Action = {|
- type: ActionType,
- payload: any,
- error?: boolean,
- meta?: mixed,
-|};
-
-export type ActionCreator = (any, any) => Action;
-
-export type ActionThunkCreator = (any) => (dispatch: Dispatch<*>) => Promise<*>;
-
-// helper to sort of flatten api response objects to arrays
-const objToArr = (data: any): any[] => {
- if(!data)
- throw new Error(`Invalid data "${ data }"`);
-
- if(Array.isArray(data))
- return data;
- return Object.entries(data)
- .map(([k, obj]) => objToArr(obj))
- .reduce((a: any[], objs: any[]) => [...a, ...objs], [])
- ;
-};
-
-export const fetchAllObjects: ActionThunkCreator = () => async (dispatch: Dispatch<*>) => {
- //console.log(`fetchAllObjects`);
- const getFuncs = [...BEAT_ENTITIES].map(e => genModuleApiFuncs(e).get);
- const jsons = await Promise.all(getFuncs.map(async (get): Promise<*> => get()));
- const arrs = jsons.map((j, i, js) => objToArr(j));
-
- //dispatch(settingsSave(arrs[8]));
-
- dispatch(databaseSave(arrs[0]));
- dispatch(librarySave(arrs[1]));
- dispatch(dataformatSave(arrs[2]));
- dispatch(algorithmSave(arrs[3]));
- dispatch(toolchainSave(arrs[4]));
- dispatch(experimentSave(arrs[5]));
- dispatch(plotterSave(arrs[6]));
- dispatch(plotterparameterSave(arrs[7]));
- dispatch(clearUnsaved());
-
- const settingsGet = genModuleApiFuncs('settings').get;
- const settingsJson = await settingsGet();
- dispatch(settingsSave(settingsJson));
-
- const envGet = genModuleApiFuncs('environments').get;
- const envJson = await envGet();
- dispatch(environmentsSave(envJson));
-};
-
-export const deleteObject = (entity: BeatEntity, obj: BeatObject): ActionThunkCreator => () => async (dispatch: Dispatch<*>) => {
- const del = genModuleApiFuncs(entity).delete;
- const res = await del(obj);
-
- switch(entity){
- case 'database':
- dispatch(databaseDelete(obj));
- break;
- case 'library':
- dispatch(libraryDelete(obj));
- break;
- case 'dataformat':
- dispatch(dataformatDelete(obj));
- break;
- case 'algorithm':
- dispatch(algorithmDelete(obj));
- break;
- case 'toolchain':
- dispatch(toolchainDelete(obj));
- break;
- case 'experiment':
- dispatch(experimentDelete(obj));
- case 'plotter':
- dispatch(plotterDelete(obj));
- case 'plotterparameter':
- dispatch(plotterparameterDelete(obj));
- break;
- }
-};
-
-export const createObject = (entity: BeatEntity, obj: BeatObject, copiedObjName?: string): ActionThunkCreator => () => async (dispatch: Dispatch<*>) => {
- const post = genModuleApiFuncs(entity).post;
- const payload = {
- obj,
- copiedObjName: copiedObjName || '',
- };
- const res = await post(payload);
-
- switch(entity){
- case 'database':
- dispatch(databaseAdd(obj));
- break;
- case 'library':
- dispatch(libraryAdd(obj));
- break;
- case 'dataformat':
- dispatch(dataformatAdd(obj));
- break;
- case 'algorithm':
- dispatch(algorithmAdd(obj));
- break;
- case 'toolchain':
- dispatch(toolchainAdd(obj));
- break;
- case 'experiment':
- dispatch(experimentAdd(obj));
- case 'plotter':
- dispatch(plotterAdd(obj));
- case 'plotterparameter':
- dispatch(plotterparameterAdd(obj));
- break;
- }
-};
-
-export const databaseSave: ActionCreator = (objs: BeatObject[]): Action => ({ type: Types.SAVE_DATABASE, payload: objs, });
-const databaseAdd: ActionCreator = (obj: BeatObject): Action => ({ type: Types.ADD_DATABASE, payload: obj, });
-const databaseDelete: ActionCreator = (obj: BeatObject): Action => ({ type: Types.DELETE_DATABASE, payload: obj, });
-export const databaseUpdate: ActionCreator = (oldName: string, obj: BeatObject): Action => ({ type: Types.UPDATE_DATABASE, payload: {oldName, obj}, });
-
-export const librarySave: ActionCreator = (objs: BeatObject[]): Action => ({ type: Types.SAVE_LIBRARY, payload: objs, });
-const libraryAdd: ActionCreator = (obj: BeatObject): Action => ({ type: Types.ADD_LIBRARY, payload: obj, });
-const libraryDelete: ActionCreator = (obj: BeatObject): Action => ({ type: Types.DELETE_LIBRARY, payload: obj, });
-export const libraryUpdate: ActionCreator = (oldName: string, obj: BeatObject): Action => ({ type: Types.UPDATE_LIBRARY, payload: {oldName, obj}, });
-
-export const dataformatSave: ActionCreator = (objs: BeatObject[]): Action => ({ type: Types.SAVE_DATAFORMAT, payload: objs, });
-const dataformatAdd: ActionCreator = (obj: BeatObject): Action => ({ type: Types.ADD_DATAFORMAT, payload: obj, });
-const dataformatDelete: ActionCreator = (obj: BeatObject): Action => ({ type: Types.DELETE_DATAFORMAT, payload: obj, });
-export const dataformatUpdate: ActionCreator = (oldName: string, obj: BeatObject): Action => ({ type: Types.UPDATE_DATAFORMAT, payload: {oldName, obj}, });
-
-export const algorithmSave: ActionCreator = (objs: BeatObject[]): Action => ({ type: Types.SAVE_ALGORITHM, payload: objs, });
-const algorithmAdd: ActionCreator = (obj: BeatObject): Action => ({ type: Types.ADD_ALGORITHM, payload: obj, });
-const algorithmDelete: ActionCreator = (obj: BeatObject): Action => ({ type: Types.DELETE_ALGORITHM, payload: obj, });
-export const algorithmUpdate: ActionCreator = (oldName: string, obj: BeatObject): Action => ({ type: Types.UPDATE_ALGORITHM, payload: {oldName, obj}, });
-
-export const toolchainSave: ActionCreator = (objs: BeatObject[]): Action => ({ type: Types.SAVE_TOOLCHAIN, payload: objs, });
-const toolchainAdd: ActionCreator = (obj: BeatObject): Action => ({ type: Types.ADD_TOOLCHAIN, payload: obj, });
-const toolchainDelete: ActionCreator = (obj: BeatObject): Action => ({ type: Types.DELETE_TOOLCHAIN, payload: obj, });
-export const toolchainUpdate: ActionCreator = (oldName: string, obj: BeatObject): Action => ({ type: Types.UPDATE_TOOLCHAIN, payload: {oldName, obj}, });
-
-export const experimentSave: ActionCreator = (objs: BeatObject[]): Action => ({ type: Types.SAVE_EXPERIMENT, payload: objs, });
-const experimentAdd: ActionCreator = (obj: BeatObject): Action => ({ type: Types.ADD_EXPERIMENT, payload: obj, });
-const experimentDelete: ActionCreator = (obj: BeatObject): Action => ({ type: Types.DELETE_EXPERIMENT, payload: obj, });
-export const experimentUpdate: ActionCreator = (oldName: string, obj: BeatObject): Action => ({ type: Types.UPDATE_EXPERIMENT, payload: {oldName, obj}, });
-
-export const plotterSave: ActionCreator = (objs: BeatObject[]): Action => ({ type: Types.SAVE_PLOTTER, payload: objs, });
-const plotterAdd: ActionCreator = (obj: BeatObject): Action => ({ type: Types.ADD_PLOTTER, payload: obj, });
-const plotterDelete: ActionCreator = (obj: BeatObject): Action => ({ type: Types.DELETE_PLOTTER, payload: obj, });
-export const plotterUpdate: ActionCreator = (oldName: string, obj: BeatObject): Action => ({ type: Types.UPDATE_PLOTTER, payload: {oldName, obj}, });
-
-export const plotterparameterSave: ActionCreator = (objs: BeatObject[]): Action => ({ type: Types.SAVE_PLOTTERPARAMETER, payload: objs, });
-const plotterparameterAdd: ActionCreator = (obj: BeatObject): Action => ({ type: Types.ADD_PLOTTERPARAMETER, payload: obj, });
-const plotterparameterDelete: ActionCreator = (obj: BeatObject): Action => ({ type: Types.DELETE_PLOTTERPARAMETER, payload: obj, });
-export const plotterparameterUpdate: ActionCreator = (oldName: string, obj: BeatObject): Action => ({ type: Types.UPDATE_PLOTTERPARAMETER, payload: {oldName, obj}, });
-
-export const environmentsSave: ActionCreator = (objs: BeatEnvironment[]): Action => ({ type: Types.SAVE_ENVIRONMENTS, payload: objs, });
-
-export const settingsSave: ActionCreator = (obj: BeatSettings): Action => ({ type: Types.SAVE_SETTINGS, payload: obj, });
-export const settingsUpdate: ActionCreator = (obj: BeatSettings): Action => ({ type: Types.UPDATE_SETTINGS, payload: obj, });
-
-export const clearUnsaved: ActionCreator = (): Action => ({ type: Types.CLEAR_UNSAVED, payload: null, });
diff --git a/conda/js/src/store/index.js b/conda/js/src/store/index.js
deleted file mode 100644
index 78296f7110aac7a5800ee13c57322fb8293b412e..0000000000000000000000000000000000000000
--- a/conda/js/src/store/index.js
+++ /dev/null
@@ -1,9 +0,0 @@
-// @flow
-import createStore from './store';
-import { fetchAllObjects } from './actions.js';
-
-const store = createStore();
-
-export default store;
-
-store.dispatch(fetchAllObjects());
diff --git a/conda/js/src/store/reducers.js b/conda/js/src/store/reducers.js
deleted file mode 100644
index 9e8ca439c9a8861c9debe69458e29e559df1598b..0000000000000000000000000000000000000000
--- a/conda/js/src/store/reducers.js
+++ /dev/null
@@ -1,129 +0,0 @@
-// @flow
-/* Reducers for Redux
- * all the reducers are here.
- * since most actions are similar (all entities have the same basic actions available) there's alot of templating that happens.
-*/
-import { combineReducers } from 'redux';
-
-import type { Action } from './actions.js';
-
-import type { BeatObject, BeatSettings, BeatEnvironment } from '@helpers/beat.js';
-
-export type State = {|
- +database: BeatObject[],
- +library: BeatObject[],
- +dataformat: BeatObject[],
- +algorithm: BeatObject[],
- +toolchain: BeatObject[],
- +experiment: BeatObject[],
- +plotter: BeatObject[],
- +plotterparameter: BeatObject[],
- +settings: BeatSettings,
- +environments: BeatEnvironment[],
- +unsaved: boolean,
-|};
-
-export type Reducer = (state: State, action: Action) => State;
-
-const initialState: State = {
- database: [],
- library: [],
- dataformat: [],
- algorithm: [],
- toolchain: [],
- experiment: [],
- plotter: [],
- plotterparameter: [],
- settings: {
- prefix: '',
- },
- environments: [],
- unsaved: false,
-};
-
-const saveFunc = (state: BeatObject[], objs: BeatObject[]): BeatObject[] => [...objs].sort((a, b) => a.name > b.name ? 1 : -1);
-const addFunc = (state: BeatObject[], obj: BeatObject): BeatObject[] => [obj, ...state];
-const deleteFunc = (state: BeatObject[], obj: BeatObject): BeatObject[] => state.filter(o => o.name !== obj.name);
-const updateFunc = (state: BeatObject[], { oldName, obj }): BeatObject[] => state.map(o => o.name === oldName ? obj : o);
-
-const entityFunc = (state: BeatObject[], actionType: string, payload: any): BeatObject[] => {
- let func;
- switch(true){
- case (/^SAVE_/.test(actionType)):
- func = saveFunc;
- break;
- case (/^ADD_/.test(actionType)):
- func = addFunc;
- break;
- case (/^DELETE_/.test(actionType)):
- func = deleteFunc;
- break;
- case (/^UPDATE_/.test(actionType)):
- func = updateFunc;
- break;
- default:
- throw new Error(`Invalid actionType "${ actionType }"`);
- }
-
- return func(state, payload);
-};
-
-const database = (state: BeatObject[] = [], action: Action) => action.type.endsWith('DATABASE') ? entityFunc(state, action.type, action.payload) : state;
-const library = (state: BeatObject[] = [], action: Action) => action.type.endsWith('LIBRARY') ? entityFunc(state, action.type, action.payload) : state;
-const dataformat = (state: BeatObject[] = [], action: Action) => action.type.endsWith('DATAFORMAT') ? entityFunc(state, action.type, action.payload) : state;
-const algorithm = (state: BeatObject[] = [], action: Action) => action.type.endsWith('ALGORITHM') ? entityFunc(state, action.type, action.payload) : state;
-const toolchain = (state: BeatObject[] = [], action: Action) => action.type.endsWith('TOOLCHAIN') ? entityFunc(state, action.type, action.payload) : state;
-const experiment = (state: BeatObject[] = [], action: Action) => action.type.endsWith('EXPERIMENT') ? entityFunc(state, action.type, action.payload) : state;
-const plotter = (state: BeatObject[] = [], action: Action) => action.type.endsWith('PLOTTER') ? entityFunc(state, action.type, action.payload) : state;
-const plotterparameter = (state: BeatObject[] = [], action: Action) => action.type.endsWith('PLOTTERPARAMETER') ? entityFunc(state, action.type, action.payload) : state;
-const settings = (state: BeatSettings = {prefix: ''}, action: Action) => {
- if(!action.type.endsWith('SETTINGS'))
- return state;
- const {type, payload} = action;
- switch(type){
- case 'UPDATE_SETTINGS':
- return {
- ...state,
- ...payload,
- };
- case 'SAVE_SETTINGS':
- return {
- ...payload
- };
- default:
- throw new Error(`Invalid actionType "${ type }"`);
- }
-};
-const environments = (state: BeatEnvironment[] = [], action: Action) => {
- if(!action.type.endsWith('ENVIRONMENTS'))
- return state;
- const {type, payload} = action;
- switch(type){
- case 'SAVE_ENVIRONMENTS':
- return payload;
- default:
- throw new Error(`Invalid actionType "${ type }"`);
- }
-};
-const unsaved = (state: boolean, action: Action) => {
- if(action.type === 'CLEAR_UNSAVED')
- return false;
- else if(!action.type.startsWith('SAVE_')){
- return true;
- }
- return state;
-};
-
-export default combineReducers({
- database,
- library,
- dataformat,
- algorithm,
- toolchain,
- experiment,
- plotter,
- plotterparameter,
- settings,
- environments,
- unsaved,
-});
diff --git a/conda/js/src/store/selectors.js b/conda/js/src/store/selectors.js
deleted file mode 100644
index 7277cbb1a7e9183e772dc0f6292aec4ac69916d0..0000000000000000000000000000000000000000
--- a/conda/js/src/store/selectors.js
+++ /dev/null
@@ -1,102 +0,0 @@
-// @flow
-/* State selectors for our Redux store via Reselect
- * basically a bunch of memoized shortcuts to certain state/derived state
-*/
-import { createSelector } from 'reselect';
-import type { State } from './reducers.js';
-import { getTcFromExpName } from '@helpers/beat';
-
-import { getValidDatabaseObj } from '@helpers/beat';
-import { getValidDataformatObj } from '@helpers/beat';
-import { getValidLibraryObj } from '@helpers/beat';
-import { getValidAlgorithmObj } from '@helpers/beat';
-import { getValidToolchainObj } from '@helpers/beat';
-import { getValidExperimentObj } from '@helpers/beat';
-import { getValidPlotterObj } from '@helpers/beat';
-import { getValidPlotterparameterObj } from '@helpers/beat';
-
-const getObjs = {
- database: getValidDatabaseObj,
- dataformat: getValidDataformatObj,
- library: getValidLibraryObj,
- algorithm: getValidAlgorithmObj,
- toolchain: getValidToolchainObj,
- experiment: getValidExperimentObj,
- plotter: getValidPlotterObj,
- plotterparameter: getValidPlotterparameterObj,
-};
-
-export const databaseGet = (state: State) => state.database.map(o => getObjs['database'](o));
-export const dataformatGet = (state: State) => state.dataformat.map(o => getObjs['dataformat'](o));
-export const libraryGet = (state: State) => state.library.map(o => getObjs['library'](o));
-export const algorithmGet = (state: State) => state.algorithm.map(o => getObjs['algorithm'](o));
-export const toolchainGet = (state: State) => state.toolchain.map(o => getObjs['toolchain'](o));
-export const experimentGet = (state: State) => createSelector(
- state => state.experiment,
- algorithmGet,
- toolchainGet,
- (exps, algs, tcs) => exps.map(o => {
- const tcName = getTcFromExpName(o.name);
- const tc = tcs.find(tc => tc.name === tcName);
- if(!tc)
- throw new Error(`Could not find toolchain for experiment "${ o.name }`);
-
- return getObjs['experiment'](o, tc, algs);
- })
-)(state);
-export const plotterGet = (state: State) => state.plotter.map(o => getObjs['plotter'](o));
-export const plotterparameterGet = (state: State) => state.plotterparameter.map(o => getObjs['plotterparameter'](o));
-export const settingsGet = (state: State) => state.settings;
-export const environmentsGet = (state: State) => state.environments;
-export const unsavedGet = (state: State) => state.unsaved;
-
-export type FlattenedDatabaseEntry = {|
- database: string,
- protocol: string,
- protocolTemplate: string,
- set: string,
- setTemplate: string,
- outputs: {
- [string]: string,
- },
-|};
-
-export const databaseProtocols: ((state: State) => any[]) = createSelector(
- databaseGet,
- (dbs) => dbs.map((db, i) =>
- db.contents.protocols ? db.contents.protocols.map(p =>
- ({
- ...p,
- database: db.name,
- })
- ) : []
- ).reduce((a, ps) => [...a, ...ps], [])
-);
-
-export const flattenedDatabases: ((state: State) => FlattenedDatabaseEntry[]) = createSelector(
- databaseGet,
- (dbs) => dbs.map((db, i) =>
- db.contents.protocols ? db.contents.protocols.map(p =>
- p.sets.map(s =>
- ({
- database: dbs[i].name,
- protocol: p.name,
- protocolTemplate: p.template,
- set: s.name,
- setTemplate: s.template,
- outputs: s.outputs,
- })
- )
- ).reduce((a, ss) => [...a, ...ss], []) : []
- ).reduce((a, ss) => [...a, ...ss], [])
-);
-
-export const normalBlocks = createSelector(
- algorithmGet,
- (alg) => alg.filter(alg => alg.contents.results === undefined)
-);
-
-export const analyzerBlocks = createSelector(
- algorithmGet,
- (alg) => alg.filter(alg => alg.contents.results !== undefined)
-);
diff --git a/conda/js/src/store/store.js b/conda/js/src/store/store.js
deleted file mode 100644
index 3c4fc9bde082f91b37b2cb7c378c9e2114032dbb..0000000000000000000000000000000000000000
--- a/conda/js/src/store/store.js
+++ /dev/null
@@ -1,32 +0,0 @@
-// @flow
-// builds the store and fetches the objects
-import { createStore, applyMiddleware, compose } from 'redux';
-import reducer from './reducers';
-import type { State } from './reducers';
-import thunk from 'redux-thunk';
-
-const composeEnhancers = window.__REDUX_DEVTOOLS_EXTENSION_COMPOSE__ || compose;
-
-const createStoreFunc = (preloadedState?: State) => {
- return preloadedState ?
- createStore(
- reducer,
- preloadedState,
- composeEnhancers(
- applyMiddleware(
- thunk,
- ),
- ),
- )
- :
- createStore(
- reducer,
- composeEnhancers(
- applyMiddleware(
- thunk,
- ),
- ),
- );
-};
-
-export default createStoreFunc;
diff --git a/conda/js/test/index.js b/conda/js/test/index.js
deleted file mode 100644
index d68aa5e71a3e670b161673d196519bb959d3be53..0000000000000000000000000000000000000000
--- a/conda/js/test/index.js
+++ /dev/null
@@ -1,32 +0,0 @@
-import { configure } from 'enzyme';
-import Adapter from 'enzyme-adapter-react-16';
-import chai from 'chai';
-import chaiEnzyme from 'chai-enzyme';
-configure({ adapter: new Adapter() });
-chai.use(chaiEnzyme());
-import 'bootstrap/dist/css/bootstrap.min.css';
-
-function importAll (r) {
- r.keys().forEach(r);
-}
-
-export const spies = [];
-afterEach(function masterAfterEach() {
- while(spies.length > 0){
- const spy = spies.pop();
- if(spy && spy.restore)
- spy.restore();
- }
-});
-
-// require all test files using special Webpack feature
-// https://webpack.js.org/guides/dependency-management/#require-context
-const componentTestsContext = require.context('../src/components', true, /\.spec.js(x)?$/);
-const helperTestsContext = require.context('../src/helpers', true, /\.spec.js(x)?$/);
-const storeTestsContext = require.context('../src/store', true, /\.spec.js(x)?$/);
-const e2eTestsContext = require.context('.', true, /\.spec.js(x)?$/);
-
-importAll(componentTestsContext);
-importAll(helperTestsContext);
-importAll(storeTestsContext);
-importAll(e2eTestsContext);
diff --git a/conda/js/test/selenium_test.js b/conda/js/test/selenium_test.js
deleted file mode 100644
index 31a49d7b3e404f6d7812bc72e843ca4e6dd60a9b..0000000000000000000000000000000000000000
--- a/conda/js/test/selenium_test.js
+++ /dev/null
@@ -1,17 +0,0 @@
-const {Builder, By, Key, until} = require('selenium-webdriver');
-const firefox = require('selenium-webdriver/firefox');
-
-const options = new firefox.Options();
-options.addArguments('-headless');
-
-(async function example() {
- let driver = await new Builder().forBrowser('firefox').setFirefoxOptions(options).build();
- try {
- await driver.get('http://www.google.com/ncr');
- await driver.findElement(By.name('q')).sendKeys('webdriver', Key.RETURN);
- await driver.wait(until.titleIs('webdriver - Google Search'), 10000);
- console.log('it worked!');
- } finally {
- await driver.quit();
- }
-})();
diff --git a/conda/js/test/selenium_tutorial_test.js b/conda/js/test/selenium_tutorial_test.js
deleted file mode 100644
index df6170deda63248d967412cb5c10c9a0a659bc0a..0000000000000000000000000000000000000000
--- a/conda/js/test/selenium_tutorial_test.js
+++ /dev/null
@@ -1,380 +0,0 @@
-// must have the rest server running with at least the contents of the tutorial prefix
-const {Builder, By, Key, until} = require('selenium-webdriver');
-const firefox = require('selenium-webdriver/firefox');
-
-// window size we're testing with
-const winX = 1920, winY = 1080;
-const options = new firefox.Options();
-// sometimes, selenium will hang forever in the middle of the test if the test is ran headlessly
-// if you encounter this issue, comment out this headless flag
-// (it doesn't seem to ever hang when running non-headlessly)
-// the test shouldnt take more than a minute-ish either way
-options.addArguments('-headless');
-options.addArguments(`--window-size=${ winX },${ winY }`);
-
-(async function example() {
- let driver = await new Builder().forBrowser('firefox').setFirefoxOptions(options).build();
- await driver.manage().window().setRect({x: 0, y: 0, width: winX, height: winY});
- try {
- await driver.get('http://localhost:9101/');
-
- /**************************************************************
- * MEANS EXP
- */
-
- // navigate to exp list
- await driver.findElement(By.linkText('experiments')).click();
- //.sendKeys('webdriver', Key.RETURN);
- await driver.wait(until.elementLocated(By.css('input[placeholder="Search experiments..."]'), 2000));
-
- // click the clone button next to test/test/iris/1/iris
- let eLink = await driver.findElement(By.linkText('test/test/iris/1/iris'));
- await eLink.findElement(By.xpath('../..')).findElement(By.css('button.btn-outline-success')).click();
- await driver.wait(until.elementLocated(By.css('.modal')), 2000);
-
- // make new exp
- let eUser = await driver.findElement(By.css('input[placeholder="Experiment user..."]'));
- await eUser.clear();
- await eUser.sendKeys('selenium');
- let eName = driver.findElement(By.css('input[placeholder="Experiment name..."]'));
- await eName.clear();
- await eName.sendKeys('means');
- await driver.sleep(1000);
- await driver.findElement(By.css('.modal button.btn-primary')).click();
- await driver.wait(until.elementLocated(By.linkText('selenium/test/iris/1/means')), 2000);
- await driver.sleep(1000);
-
- // go to new exp
- await driver.findElement(By.linkText('selenium/test/iris/1/means')).click();
- await driver.wait(until.elementLocated(By.css('div.experimentEditor')), 2000);
-
- // click on training_alg block
- await driver.findElement(By.css('rect#block_training_alg')).click();
- await driver.wait(until.elementLocated(By.css('div.block_training_alg')), 2000);
-
- // set the algorithm to the new one
- await driver.findElement(By.css('select.custom-select')).click();
- await driver.findElement(By.css('select.custom-select option[value="test/means_training/1"]')).click();
-
- // do same for testing_alg block
- await driver.findElement(By.css('rect#block_testing_alg')).click();
- await driver.wait(until.elementLocated(By.css('div.block_testing_alg')), 2000);
- await driver.findElement(By.css('select.custom-select')).click();
- await driver.findElement(By.css('select.custom-select option[value="test/means_testing/1"]')).click();
-
- // make sure the exp is still valid
- await driver.wait(until.elementLocated(By.css('.badge-success')), 2000);
-
- // save exp
- await driver.findElement(By.css('div.experimentEditor > div.d-flex > button.btn-outline-secondary')).click();
- await driver.sleep(1000);
-
- /**************************************************************
- * CLEANUP
- */
-
- // go back and delete exp
- await driver.findElement(By.linkText('experiments')).click();
- await driver.wait(until.elementLocated(By.css('input[placeholder="Search experiments..."]'), 2000));
- eLink = await driver.findElement(By.linkText('selenium/test/iris/1/means'));
- await eLink.findElement(By.xpath('../..')).findElement(By.css('button.btn-outline-danger')).click();
- await driver.sleep(1000);
- await driver.findElement(By.css('.modal button.btn-danger')).click();
- await driver.sleep(1000);
-
- /**************************************************************
- * ADVANCED IRIS TOOLCHAIN
- */
-
- // navigate to tc list
- await driver.findElement(By.linkText('toolchains')).click();
- await driver.wait(until.elementLocated(By.css('input[placeholder="Search toolchains..."]'), 2000));
-
- // click the clone button next to test/iris/1
- let tLink = await driver.findElement(By.linkText('test/iris/1'));
- await tLink.findElement(By.xpath('../..')).findElement(By.css('button.btn-outline-success + button.btn-outline-success')).click();
- await driver.wait(until.elementLocated(By.css('.modal')), 2000);
-
- // make new tc
- const tUser = await driver.findElement(By.css('input[placeholder="Toolchain user..."]'));
- await tUser.clear();
- await tUser.sendKeys('selenium');
- const tName = driver.findElement(By.css('input[placeholder="New toolchain name..."]'));
- await tName.clear();
- await tName.sendKeys('iris_advanced');
- await driver.sleep(1000);
- await driver.findElement(By.css('.modal button.btn-primary')).click();
- await driver.wait(until.elementLocated(By.linkText('selenium/iris_advanced/1')), 2000);
- await driver.sleep(1000);
-
- // go to new tc
- await driver.findElement(By.linkText('selenium/iris_advanced/1')).click();
- await driver.wait(until.elementLocated(By.css('div.toolchainEditor')), 2000);
-
- // delete conn between training_data.measurements & training_alg.measurements
- let rcEl = await driver.findElement(By.css('#\\#training_data-measurements-training_alg-measurements'));
- await driver.actions().contextClick(rcEl).perform();
- await driver.sleep(1000);
- await driver.findElement(By.css('nav.react-contextmenu--visible > div')).click();
-
- // delete conn between testing_data.measurements & testing_alg.measurements
- rcEl = await driver.findElement(By.css('#\\#testing_data-measurements-testing_alg-measurements'));
- await driver.actions().contextClick(rcEl).perform();
- await driver.sleep(1000);
- await driver.findElement(By.css('nav.react-contextmenu--visible > div')).click();
-
- // add training preprocessor block way below the rest of the toolchain
- let originEl = await driver.findElement(By.css('#block_testing_data'));
- await driver.actions().move({x: 100, y: 100, origin: originEl}).pause(500).contextClick().perform();
- await driver.sleep(1000);
- await driver.findElement(By.css('nav.react-contextmenu--visible > div:first-child')).click();
-
- // edit training preprocessor
- await driver.findElement(By.css('#block_block')).click();
- await driver.sleep(1000);
- // name
- let tbName = await driver.findElement(By.css('#tcModalInitFocus'));
- tbName.clear();
- tbName.sendKeys('pre_training');
- // input
- await driver.findElement(By.css('.modal-body .btn-secondary')).click();
- let tbiName = await driver.findElement(By.css('.modal-body > form > div.row input'));
- await tbiName.clear();
- await tbiName.sendKeys('measurements');
- // output
- await driver.findElement(By.css('.modal-body .col-sm-6 + .col-sm-6 .btn-secondary')).click();
- let tboName = await driver.findElement(By.css('.modal-body > form > div.row .col-sm-6 + .col-sm-6 input'));
- await tboName.clear();
- await tboName.sendKeys('measurements');
- await driver.sleep(1000);
- //close
- await driver.findElement(By.css('.modal button.close')).click();
- await driver.sleep(1000);
-
- // copy the block
- rcEl = await driver.findElement(By.css('#block_pre_training'));
- await driver.actions().contextClick(rcEl).perform();
- await driver.sleep(1000);
- await driver.findElement(By.css('nav.react-contextmenu--visible > div + div')).click();
-
- // paste testing preprocessor block way below the rest of the toolchain
- originEl = await driver.findElement(By.css('#block_pre_training'));
- await driver.actions().move({x: 150, origin: originEl}).pause(500).contextClick().perform();
- await driver.sleep(1000);
- await driver.findElement(By.css('nav.react-contextmenu--visible > div:first-child')).click();
-
- // unselect pasted block
- await driver.actions().move({y: 200, origin: originEl}).pause(500).click().pause(500).perform();
-
- // edit the block name
- await driver.findElement(By.css('#block_pre_training0')).click();
- await driver.sleep(1000);
- tbName = await driver.findElement(By.css('#tcModalInitFocus'));
- await tbName.clear();
- await tbName.sendKeys('pre_testing');
- await driver.sleep(1000);
- //close
- await driver.findElement(By.css('.modal button.close')).click();
- await driver.sleep(1000);
-
- // connect pre_training to rest of tc
- // data to pre
- let fromBox = await driver.findElement(By.css('rect#training_data-output-measurements'));
- let toBox = await driver.findElement(By.css('rect#pre_training-input-measurements'));
- await driver.actions().dragAndDrop(fromBox, toBox).pause(200).perform();
- // pre to alg
- fromBox = await driver.findElement(By.css('rect#pre_training-output-measurements'));
- toBox = await driver.findElement(By.css('rect#training_alg-input-measurements'));
- await driver.actions().dragAndDrop(fromBox, toBox).pause(200).perform();
-
- // connect pre_testing to rest of tc
- // data to pre
- fromBox = await driver.findElement(By.css('rect#testing_data-output-measurements'));
- toBox = await driver.findElement(By.css('rect#pre_testing-input-measurements'));
- await driver.actions().dragAndDrop(fromBox, toBox).pause(500).perform();
- // pre to alg
- fromBox = await driver.findElement(By.css('rect#pre_testing-output-measurements'));
- toBox = await driver.findElement(By.css('rect#testing_alg-input-measurements'));
- await driver.actions().dragAndDrop(fromBox, toBox).pause(500).perform();
-
- // fix the channel on pre_training
- await driver.findElement(By.css('#block_pre_training')).click();
- await driver.sleep(1000);
- await driver.findElement(By.css('.modal-body select.form-control')).click();
- await driver.findElement(By.css('.modal-body option[value="training_data"]')).click();
- await driver.sleep(500);
- await driver.findElement(By.css('.modal button.close')).click();
- await driver.sleep(1000);
-
- // layout the tc
- await driver.findElement(By.xpath('//button[contains(.,"Layout")]')).click();
- // needs to communicate w graphviz, give it some time
- await driver.sleep(5000);
-
- // make sure the tc is still valid
- await driver.wait(until.elementLocated(By.css('.badge-success')), 2000);
-
- // save
- await driver.findElement(By.css('div.toolchainEditor > div.d-flex > button.btn-outline-secondary')).click();
- await driver.sleep(1000);
-
- /**************************************************************
- * CLEANUP
- */
-
- /**************************************************************
- * ADVANCED IRIS PREPROCESSOR ALGORITHM
- */
-
- // navigate to alg list
- await driver.findElement(By.linkText('algorithms')).click();
- await driver.wait(until.elementLocated(By.css('input[placeholder="Search algorithms..."]'), 2000));
-
- // click the new button
- await driver.findElement(By.css('.dropdown + div > .btn-outline-success')).click();
- await driver.wait(until.elementLocated(By.css('.modal')), 2000);
-
- // make new alg
- const aUser = await driver.findElement(By.css('input[placeholder="Algorithm user..."]'));
- await aUser.clear();
- await aUser.sendKeys('selenium');
- const aName = driver.findElement(By.css('input[placeholder="New algorithm name..."]'));
- await aName.clear();
- await aName.sendKeys('iris_preprocessor');
- await driver.sleep(1000);
- await driver.findElement(By.css('.modal button.btn-primary')).click();
- await driver.wait(until.elementLocated(By.linkText('selenium/iris_preprocessor/1')), 2000);
- await driver.sleep(1000);
-
- // go to new alg
- await driver.findElement(By.linkText('selenium/iris_preprocessor/1')).click();
- await driver.wait(until.elementLocated(By.css('ul.nav-fill.nav.nav-tabs')), 2000);
-
- // add an input & output
- await driver.findElement(By.css('#newInputBtn')).click();
- await driver.findElement(By.css('#newOutputBtn')).click();
-
- // change input & output name to "measurements"
- let aiDiv = await driver.findElement(By.css('#newInputBtn')).findElement(By.xpath('..')).findElement(By.css('div:first-child'));
- let aoDiv = await driver.findElement(By.css('#newOutputBtn')).findElement(By.xpath('..')).findElement(By.css('div:first-child'));
- let aiName = await aiDiv.findElement(By.css('input'));
- await aiName.clear();
- await aiName.sendKeys('measurements');
- let aoName = await aoDiv.findElement(By.css('input'));
- await aoName.clear();
- await aoName.sendKeys('measurements');
-
- // select type system/array_1d_floats/1
- await aiDiv.findElement(By.css('select.custom-select')).click();
- await aiDiv.findElement(By.css('select.custom-select option[value="system/array_1d_floats/1"]')).click();
- await aoDiv.findElement(By.css('select.custom-select')).click();
- await aoDiv.findElement(By.css('select.custom-select option[value="system/array_1d_floats/1"]')).click();
- await driver.sleep(500);
-
- // save
- await driver.findElement(By.css('.tab-pane.active > div > div.d-flex > button.btn-outline-secondary')).click();
- await driver.sleep(1000);
-
- /**************************************************************
- * ADVANCED IRIS EXPERIMENT
- */
-
- // navigate to exp list
- await driver.findElement(By.linkText('experiments')).click();
- //.sendKeys('webdriver', Key.RETURN);
- await driver.wait(until.elementLocated(By.css('input[placeholder="Search experiments..."]'), 2000));
-
- // click the new button
- await driver.findElement(By.css('.dropdown + div > .btn-outline-success')).click();
- await driver.wait(until.elementLocated(By.css('.modal')), 2000);
-
- // make new exp
- eUser = await driver.findElement(By.css('input[placeholder="Experiment user..."]'));
- await eUser.clear();
- await eUser.sendKeys('selenium');
- let eTc = await driver.findElement(By.css('.modal select'));
- await eTc.click();
- await eTc.findElement(By.css('select option[value="selenium/iris_advanced/1"]')).click();
- eName = driver.findElement(By.css('input[placeholder="Experiment name..."]'));
- await eName.clear();
- await eName.sendKeys('iris');
- await driver.sleep(1000);
- await driver.findElement(By.css('.modal button.btn-primary')).click();
- await driver.wait(until.elementLocated(By.linkText('selenium/selenium/iris_advanced/1/iris')), 2000);
- await driver.sleep(1000);
-
- // go to new exp
- await driver.findElement(By.linkText('selenium/selenium/iris_advanced/1/iris')).click();
- await driver.wait(until.elementLocated(By.css('div.experimentEditor')), 2000);
-
- // assign dataset protocol
- await driver.findElement(By.css('.datasets select')).click();
- await driver.findElement(By.css(`.datasets select option[value='{"testing_data":{"database":"iris/1","protocol":"Main","set":"training"},"training_data":{"database":"iris/1","protocol":"Main","set":"testing"}}']`)).click();
-
- // pre_training block
- await driver.findElement(By.css('rect#block_pre_training')).click();
- await driver.wait(until.elementLocated(By.css('div.block_pre_training')), 2000);
- await driver.findElement(By.css('select.custom-select')).click();
- await driver.findElement(By.css('select.custom-select option[value="selenium/iris_preprocessor/1"]')).click();
-
- // pre_testing block
- await driver.findElement(By.css('rect#block_pre_testing')).click();
- await driver.wait(until.elementLocated(By.css('div.block_pre_testing')), 2000);
- await driver.findElement(By.css('select.custom-select')).click();
- await driver.findElement(By.css('select.custom-select option[value="selenium/iris_preprocessor/1"]')).click();
-
- // training_alg block
- await driver.findElement(By.css('rect#block_training_alg')).click();
- await driver.wait(until.elementLocated(By.css('div.block_training_alg')), 2000);
- await driver.findElement(By.css('select.custom-select')).click();
- await driver.findElement(By.css('select.custom-select option[value="test/iris_training/1"]')).click();
-
- // testing_alg block
- await driver.findElement(By.css('rect#block_testing_alg')).click();
- await driver.wait(until.elementLocated(By.css('div.block_testing_alg')), 2000);
- await driver.findElement(By.css('select.custom-select')).click();
- await driver.findElement(By.css('select.custom-select option[value="test/iris_testing/1"]')).click();
-
- // analyzer block
- await driver.findElement(By.css('rect#block_analyzer')).click();
- await driver.wait(until.elementLocated(By.css('div.block_analyzer')), 2000);
- await driver.findElement(By.css('select.custom-select')).click();
- await driver.findElement(By.css('select.custom-select option[value="test/iris_analyzer/1"]')).click();
-
- // make sure the exp is still valid
- await driver.wait(until.elementLocated(By.css('.badge-success')), 2000);
-
- // save exp
- await driver.findElement(By.css('div.experimentEditor > div.d-flex > button.btn-outline-secondary')).click();
- await driver.sleep(1000);
-
- /**************************************************************
- * CLEANUP
- */
-
- // go back and delete toolchain (which also deletes the associated experiment)
- await driver.findElement(By.linkText('toolchains')).click();
- await driver.wait(until.elementLocated(By.css('input[placeholder="Search toolchains..."]'), 2000));
- tLink = await driver.findElement(By.linkText('selenium/iris_advanced/1'));
- await tLink.findElement(By.xpath('../..')).findElement(By.css('button.btn-outline-danger')).click();
- await driver.sleep(1000);
- await driver.findElement(By.css('.modal button.btn-danger')).click();
- await driver.sleep(1000);
-
- // go back and delete algorithm
- await driver.findElement(By.linkText('algorithms')).click();
- await driver.wait(until.elementLocated(By.css('input[placeholder="Search algorithms..."]'), 2000));
- tLink = await driver.findElement(By.linkText('selenium/iris_preprocessor/1'));
- await tLink.findElement(By.xpath('../..')).findElement(By.css('button.btn-outline-danger')).click();
- await driver.sleep(1000);
- await driver.findElement(By.css('.modal button.btn-danger')).click();
- await driver.sleep(1000);
-
- console.log('selenium tests finished successfully!');
- } catch(e) {
- console.log('selenium tests failed!');
- console.error(e);
- } finally {
- await driver.quit();
- }
-})();
diff --git a/conda/js/test/test_algs.json b/conda/js/test/test_algs.json
deleted file mode 100644
index 3a41206a4fbb3e3b4a6a0e15a5af6c9493f3e135..0000000000000000000000000000000000000000
--- a/conda/js/test/test_algs.json
+++ /dev/null
@@ -1,1290 +0,0 @@
-[
- {
- "name": "test/iris_preprocessor/1",
- "contents": {
- "parameters": {},
- "uses": {},
- "groups": [
- {
- "inputs": {
- "measurements": {
- "type": "system/array_1d_floats/1"
- }
- },
- "name": "group",
- "outputs": {
- "measurements": {
- "type": "system/array_1d_floats/1"
- }
- }
- }
- ],
- "description": "Rounds each measurement in an Iris dataset sample to the nearest integer",
- "language": "python",
- "splittable": false
- }
- },
- {
- "name": "test/iris_testing/1",
- "contents": {
- "parameters": {},
- "uses": {},
- "groups": [
- {
- "inputs": {
- "measurements": {
- "type": "system/array_1d_floats/1"
- }
- },
- "name": "group",
- "outputs": {
- "scores": {
- "type": "system/float/1"
- }
- }
- },
- {
- "inputs": {
- "lda_machine": {
- "type": "tutorial/linear_machine/1"
- }
- },
- "name": "group0"
- }
- ],
- "description": "",
- "language": "python",
- "splittable": false
- }
- },
- {
- "name": "test/iris_training/1",
- "contents": {
- "parameters": {},
- "uses": {},
- "groups": [
- {
- "inputs": {
- "measurements": {
- "type": "system/array_1d_floats/1"
- },
- "species": {
- "type": "system/text/1"
- }
- },
- "name": "group",
- "outputs": {
- "lda_machine": {
- "type": "tutorial/linear_machine/1"
- }
- }
- }
- ],
- "description": "",
- "language": "python",
- "splittable": false
- }
- },
- {
- "name": "test/linear_machine_projection/1",
- "contents": {
- "parameters": {},
- "uses": {},
- "groups": [
- {
- "inputs": {
- "id": {
- "type": "system/uint64/1"
- },
- "image": {
- "type": "system/array_2d_uint8/1"
- }
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- "name": "user/linear_machines_scoring/1",
- "contents": {
- "groups": [
- {
- "inputs": {
- "probe_projections": {
- "type": "system/array_2d_floats/1"
- },
- "comparison_ids": {
- "type": "system/array_1d_uint64/1"
- },
- "probe_id": {
- "type": "system/uint64/1"
- },
- "probe_client_id": {
- "type": "system/uint64/1"
- }
- },
- "name": "probes",
- "outputs": {
- "scores": {
- "type": "user/probe_scores/1"
- }
- }
- },
- {
- "inputs": {
- "template_client_id": {
- "type": "system/uint64/1"
- },
- "template_id": {
- "type": "system/uint64/1"
- },
- "template_projections": {
- "type": "system/array_2d_floats/1"
- }
- },
- "name": "templates"
- }
- ],
- "splittable": true,
- "description": "Minimum Euclidean distance comparison against a template matrix",
- "language": "python"
- }
- },
- {
- "name": "user/linear_machine_x2_projection/1",
- "contents": {
- "groups": [
- {
- "inputs": {
- "image": {
- "type": "system/array_2d_floats/1"
- },
- "id": {
- "type": "system/uint64/1"
- }
- },
- "name": "main",
- "outputs": {
- "projections": {
- "type": "system/array_2d_floats/1"
- }
- }
- },
- {
- "inputs": {
- "subspace_lda": {
- "type": "user/linear_machine/1"
- },
- "subspace_pca": {
- "type": "user/linear_machine/1"
- }
- }
- }
- ],
- "splittable": true,
- "description": "Accumulate images and apply two linear transformations",
- "language": "python"
- }
- },
- {
- "name": "user/pca_lda/1",
- "contents": {
- "groups": [
- {
- "inputs": {
- "image": {
- "type": "system/array_2d_floats/1"
- },
- "client_id": {
- "type": "system/uint64/1"
- }
- },
- "outputs": {
- "subspace_lda": {
- "type": "user/linear_machine/1"
- },
- "subspace_pca": {
- "type": "user/linear_machine/1"
- }
- }
- }
- ],
- "parameters": {
- "number-of-pca-components": {
- "default": "5",
- "type": "uint32",
- "description": "the number of dimensions to retain after applying PCA"
- },
- "number-of-lda-components": {
- "default": "2",
- "type": "uint32",
- "description": "the number of dimensions to retain after applying LDA"
- }
- },
- "splittable": false,
- "description": "Principal Component Analysis (PCA) + Linear Discrimanant Analysis (LDA)",
- "language": "python"
- }
- }
-]
diff --git a/conda/js/test/test_dbs.json b/conda/js/test/test_dbs.json
deleted file mode 100644
index eb5d1a78d81fa681116aa0dd44e2ded8f6a8c25d..0000000000000000000000000000000000000000
--- a/conda/js/test/test_dbs.json
+++ /dev/null
@@ -1,2511 +0,0 @@
-[
- {
- "name": "iris/1",
- "contents": {
- "description": "",
- "root_folder": "/not/needed",
- "protocols": [
- {
- "name": "Main",
- "sets": [
- {
- "parameters": {},
- "name": "training",
- "outputs": {
- "measurements": "system/array_1d_floats/1",
- "species": "system/text/1"
- },
- "template": "iris",
- "view": "Training"
- },
- {
- "parameters": {},
- "name": "testing",
- "outputs": {
- "measurements": "system/array_1d_floats/1",
- "species": "system/text/1"
- },
- "template": "iris",
- "view": "Testing"
- }
- ],
- "template": "iris"
- }
- ]
- }
- },
- {
- "name": "atnt/3",
- "contents": {
- "root_folder": "/remote/dataset/att_faces",
- "description": "The AT&T Database of Faces",
- "protocols": [
- {
- "name": "idiap",
- "template": "simple_face_recognition",
- "sets": [
- {
- "outputs": {
- "image": "system/array_2d_uint8/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1"
- },
- "name": "train",
- "template": "train",
- "view": "Train"
- },
- {
- "outputs": {
- "image": "system/array_2d_uint8/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "name": "templates",
- "template": "templates",
- "view": "Templates"
- },
- {
- "outputs": {
- "probe_id": "system/uint64/1",
- "image": "system/array_2d_uint8/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "name": "probes",
- "template": "probes",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "idiap_test_eyepos",
- "template": "advanced_face_recognition",
- "sets": [
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1"
- },
- "name": "train",
- "template": "train",
- "view": "TrainEyePositions"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "TemplatesEyePositions",
- "name": "dev_templates",
- "parameters": {
- "group": "dev"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "ProbesEyePositions",
- "name": "dev_probes",
- "parameters": {
- "group": "dev"
- },
- "template": "probes"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "TemplatesEyePositions",
- "name": "test_templates",
- "parameters": {
- "group": "eval"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "ProbesEyePositions",
- "name": "test_probes",
- "parameters": {
- "group": "eval"
- },
- "template": "probes"
- }
- ]
- }
- ]
- }
- },
- {
- "name": "avspoof/2",
- "contents": {
- "description": "The AVspoof Database",
- "root_folder": "/remote/dataset/AVSpoof",
- "protocols": [
- {
- "name": "smalltest_verify_train",
- "template": "verify_trainset_speech",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "smalltest",
- "purpose": "enroll"
- },
- "name": "train_templates",
- "template": "templates",
- "view": "RecognitionTemplates"
- },
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "smalltest",
- "purpose": "probe"
- },
- "name": "train_probes",
- "template": "probes",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "smalltest_verify_train_spoof",
- "template": "verify_trainset_speech_spoof",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "smalltest",
- "purpose": "attack"
- },
- "name": "train_attacks",
- "template": "attacks",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "smalltest_verification",
- "template": "advanced_speaker_recognition",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "smalltest"
- },
- "name": "train",
- "template": "train",
- "view": "RecognitionTraining"
- },
- {
- "outputs": {
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- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1"
- },
- "parameters": {
- "group": "devel",
- "protocol": "smalltest",
- "purpose": "enroll"
- },
- "name": "dev_templates",
- "template": "templates",
- "view": "RecognitionTemplates"
- },
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
- "group": "devel",
- "protocol": "smalltest",
- "purpose": "probe"
- },
- "name": "dev_probes",
- "template": "probes",
- "view": "Probes"
- },
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1"
- },
- "parameters": {
- "group": "test",
- "protocol": "smalltest",
- "purpose": "enroll"
- },
- "name": "test_templates",
- "template": "templates",
- "view": "RecognitionTemplates"
- },
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
- "group": "test",
- "protocol": "smalltest",
- "purpose": "probe"
- },
- "name": "test_probes",
- "template": "probes",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "smalltest_verification_spoof",
- "template": "speaker_recognition_spoof",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
- "group": "devel",
- "protocol": "smalltest",
- "purpose": "attack"
- },
- "name": "dev_attacks",
- "template": "attacks",
- "view": "Probes"
- },
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
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- "protocol": "smalltest",
- "purpose": "attack"
- },
- "name": "test_attacks",
- "template": "attacks",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "grandtest_verify_train",
- "template": "verify_trainset_speech",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "grandtest",
- "purpose": "enroll"
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- "name": "train_templates",
- "template": "templates",
- "view": "RecognitionTemplates"
- },
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
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- "protocol": "grandtest",
- "purpose": "probe"
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- "name": "train_probes",
- "template": "probes",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "grandtest_verify_train_spoof",
- "template": "verify_trainset_speech_spoof",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
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- "purpose": "attack"
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- "name": "train_attacks",
- "template": "attacks",
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- ]
- },
- {
- "name": "grandtest_verification",
- "template": "advanced_speaker_recognition",
- "sets": [
- {
- "name": "train",
- "template": "train",
- "view": "RecognitionTraining",
- "parameters": {
- "protocol": "grandtest",
- "group": "train"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "dev_templates",
- "template": "templates",
- "view": "RecognitionTemplates",
- "parameters": {
- "protocol": "grandtest",
- "purpose": "enroll",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "dev_probes",
- "template": "probes",
- "view": "Probes",
- "parameters": {
- "protocol": "grandtest",
- "purpose": "probe",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_templates",
- "template": "templates",
- "view": "RecognitionTemplates",
- "parameters": {
- "protocol": "grandtest",
- "purpose": "enroll",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_probes",
- "template": "probes",
- "view": "Probes",
- "parameters": {
- "protocol": "grandtest",
- "purpose": "probe",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- }
- ]
- },
- {
- "name": "grandtest_verification_spoof",
- "template": "speaker_recognition_spoof",
- "sets": [
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- "name": "dev_attacks",
- "template": "attacks",
- "view": "Probes",
- "parameters": {
- "protocol": "grandtest",
- "purpose": "attack",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_attacks",
- "template": "attacks",
- "view": "Probes",
- "parameters": {
- "protocol": "grandtest",
- "purpose": "attack",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- }
- ]
- },
- {
- "name": "physicalaccess_verify_train",
- "template": "verify_trainset_speech",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "physical_access",
- "purpose": "enroll"
- },
- "name": "train_templates",
- "template": "templates",
- "view": "RecognitionTemplates"
- },
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
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- "protocol": "physical_access",
- "purpose": "probe"
- },
- "name": "train_probes",
- "template": "probes",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "physicalaccess_verify_train_spoof",
- "template": "verify_trainset_speech_spoof",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
- "group": "train",
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- "purpose": "attack"
- },
- "name": "train_attacks",
- "template": "attacks",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "physicalaccess_verification",
- "template": "advanced_speaker_recognition",
- "sets": [
- {
- "name": "train",
- "template": "train",
- "view": "RecognitionTraining",
- "parameters": {
- "protocol": "physical_access",
- "group": "train"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "dev_templates",
- "template": "templates",
- "view": "RecognitionTemplates",
- "parameters": {
- "protocol": "physical_access",
- "purpose": "enroll",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "dev_probes",
- "template": "probes",
- "view": "Probes",
- "parameters": {
- "protocol": "physical_access",
- "purpose": "probe",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_templates",
- "template": "templates",
- "view": "RecognitionTemplates",
- "parameters": {
- "protocol": "physical_access",
- "purpose": "enroll",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_probes",
- "template": "probes",
- "view": "Probes",
- "parameters": {
- "protocol": "physical_access",
- "purpose": "probe",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- }
- ]
- },
- {
- "name": "physicalaccess_verification_spoof",
- "template": "speaker_recognition_spoof",
- "sets": [
- {
- "name": "dev_attacks",
- "template": "attacks",
- "view": "Probes",
- "parameters": {
- "protocol": "physical_access",
- "purpose": "attack",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_attacks",
- "template": "attacks",
- "view": "Probes",
- "parameters": {
- "protocol": "physical_access",
- "purpose": "attack",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- }
- ]
- },
- {
- "name": "logicalaccess_verify_train",
- "template": "verify_trainset_speech",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "logical_access",
- "purpose": "enroll"
- },
- "name": "train_templates",
- "template": "templates",
- "view": "RecognitionTemplates"
- },
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "logical_access",
- "purpose": "probe"
- },
- "name": "train_probes",
- "template": "probes",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "logicalaccess_verify_train_spoof",
- "template": "verify_trainset_speech_spoof",
- "sets": [
- {
- "outputs": {
- "speech": "system/array_1d_floats/1",
- "client_id": "system/text/1",
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "template_ids": "system/array_1d_text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "logical_access",
- "purpose": "attack"
- },
- "name": "train_attacks",
- "template": "attacks",
- "view": "Probes"
- }
- ]
- },
- {
- "name": "logicalaccess_verification",
- "template": "advanced_speaker_recognition",
- "sets": [
- {
- "name": "train",
- "template": "train",
- "view": "RecognitionTraining",
- "parameters": {
- "protocol": "logical_access",
- "group": "train"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "dev_templates",
- "template": "templates",
- "view": "RecognitionTemplates",
- "parameters": {
- "protocol": "logical_access",
- "purpose": "enroll",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "dev_probes",
- "template": "probes",
- "view": "Probes",
- "parameters": {
- "protocol": "logical_access",
- "purpose": "probe",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_templates",
- "template": "templates",
- "view": "RecognitionTemplates",
- "parameters": {
- "protocol": "logical_access",
- "purpose": "enroll",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "template_id": "system/text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_probes",
- "template": "probes",
- "view": "Probes",
- "parameters": {
- "protocol": "logical_access",
- "purpose": "probe",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "probe_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- }
- ]
- },
- {
- "name": "logicalaccess_verification_spoof",
- "template": "speaker_recognition_spoof",
- "sets": [
- {
- "name": "dev_attacks",
- "template": "attacks",
- "view": "Probes",
- "parameters": {
- "protocol": "logical_access",
- "purpose": "attack",
- "group": "devel"
- },
- "outputs": {
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- },
- {
- "name": "test_attacks",
- "template": "attacks",
- "view": "Probes",
- "parameters": {
- "protocol": "logical_access",
- "purpose": "attack",
- "group": "test"
- },
- "outputs": {
- "file_id": "system/text/1",
- "attack_id": "system/text/1",
- "client_id": "system/text/1",
- "template_ids": "system/array_1d_text/1",
- "speech": "system/array_1d_floats/1"
- }
- }
- ]
- },
- {
- "name": "smalltest_antispoofing",
- "template": "simple_speech_antispoofing",
- "sets": [
- {
- "outputs": {
- "attack_type": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "group": "train",
- "protocol": "smalltest"
- },
- "name": "train",
- "template": "train",
- "view": "SimpleAntispoofing"
- },
- {
- "outputs": {
- "attack_type": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "group": "devel",
- "protocol": "smalltest"
- },
- "name": "dev_probes",
- "template": "probes",
- "view": "SimpleAntispoofing"
- },
- {
- "outputs": {
- "attack_type": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "group": "test",
- "protocol": "smalltest"
- },
- "name": "eval_probes",
- "template": "probes",
- "view": "SimpleAntispoofing"
- }
- ]
- },
- {
- "name": "grandtest_antispoofing",
- "template": "simple_speech_antispoofing",
- "sets": [
- {
- "name": "train",
- "template": "train",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "grandtest",
- "group": "train"
- }
- },
- {
- "name": "dev_probes",
- "template": "probes",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "grandtest",
- "group": "devel"
- }
- },
- {
- "name": "eval_probes",
- "template": "probes",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "grandtest",
- "group": "test"
- }
- }
- ]
- },
- {
- "name": "physicalaccess_antispoofing",
- "template": "simple_speech_antispoofing",
- "sets": [
- {
- "name": "train",
- "template": "train",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "physical_access",
- "group": "train"
- }
- },
- {
- "name": "dev_probes",
- "template": "probes",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "physical_access",
- "group": "devel"
- }
- },
- {
- "name": "eval_probes",
- "template": "probes",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "physical_access",
- "group": "test"
- }
- }
- ]
- },
- {
- "name": "logicalaccess_antispoofing",
- "template": "simple_speech_antispoofing",
- "sets": [
- {
- "name": "train",
- "template": "train",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "logical_access",
- "group": "train"
- }
- },
- {
- "name": "dev_probes",
- "template": "probes",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "logical_access",
- "group": "devel"
- }
- },
- {
- "name": "eval_probes",
- "template": "probes",
- "view": "SimpleAntispoofing",
- "outputs": {
- "file_id": "system/text/1",
- "client_id": "system/text/1",
- "speech": "system/array_1d_floats/1",
- "attack_type": "system/text/1",
- "class": "system/text/1"
- },
- "parameters": {
- "protocol": "logical_access",
- "group": "test"
- }
- }
- ]
- }
- ]
- }
- },
- {
- "name": "banca/2",
- "contents": {
- "root_folder": "/remote/dataset/banca/english/images/images",
- "description": "The BANCA Database of Faces",
- "protocols": [
- {
- "name": "P",
- "template": "advanced_face_recognition",
- "sets": [
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1"
- },
- "view": "Train",
- "name": "train",
- "parameters": {
- "protocol": "P"
- },
- "template": "train"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "dev_templates",
- "parameters": {
- "protocol": "P",
- "group": "dev"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "dev_probes",
- "parameters": {
- "protocol": "P",
- "group": "dev"
- },
- "template": "probes"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "test_templates",
- "parameters": {
- "protocol": "P",
- "group": "eval"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "test_probes",
- "parameters": {
- "protocol": "P",
- "group": "eval"
- },
- "template": "probes"
- }
- ]
- },
- {
- "name": "G",
- "template": "advanced_face_recognition",
- "sets": [
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1"
- },
- "view": "Train",
- "name": "train",
- "parameters": {
- "protocol": "G"
- },
- "template": "train"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "dev_templates",
- "parameters": {
- "protocol": "G",
- "group": "dev"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "dev_probes",
- "parameters": {
- "protocol": "G",
- "group": "dev"
- },
- "template": "probes"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "test_templates",
- "parameters": {
- "protocol": "G",
- "group": "eval"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "test_probes",
- "parameters": {
- "protocol": "G",
- "group": "eval"
- },
- "template": "probes"
- }
- ]
- },
- {
- "name": "Mc",
- "template": "advanced_face_recognition",
- "sets": [
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1"
- },
- "view": "Train",
- "name": "train",
- "parameters": {
- "protocol": "Mc"
- },
- "template": "train"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "dev_templates",
- "parameters": {
- "protocol": "Mc",
- "group": "dev"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "dev_probes",
- "parameters": {
- "protocol": "Mc",
- "group": "dev"
- },
- "template": "probes"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "test_templates",
- "parameters": {
- "protocol": "Mc",
- "group": "eval"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "test_probes",
- "parameters": {
- "protocol": "Mc",
- "group": "eval"
- },
- "template": "probes"
- }
- ]
- },
- {
- "name": "Md",
- "template": "advanced_face_recognition",
- "sets": [
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1"
- },
- "view": "Train",
- "name": "train",
- "parameters": {
- "protocol": "Md"
- },
- "template": "train"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "dev_templates",
- "parameters": {
- "protocol": "Md",
- "group": "dev"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "dev_probes",
- "parameters": {
- "protocol": "Md",
- "group": "dev"
- },
- "template": "probes"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "test_templates",
- "parameters": {
- "protocol": "Md",
- "group": "eval"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "test_probes",
- "parameters": {
- "protocol": "Md",
- "group": "eval"
- },
- "template": "probes"
- }
- ]
- },
- {
- "name": "Ma",
- "template": "advanced_face_recognition",
- "sets": [
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1"
- },
- "view": "Train",
- "name": "train",
- "parameters": {
- "protocol": "Ma"
- },
- "template": "train"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "dev_templates",
- "parameters": {
- "protocol": "Ma",
- "group": "dev"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
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- "template_ids": "system/array_1d_uint64/1"
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- "group": "dev"
- },
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- {
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- "eye_centers": "system/eye_positions/1",
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- {
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- {
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- {
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- {
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- {
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- {
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- {
- "outputs": {
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- }
- },
- {
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- {
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- {
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- {
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- {
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- {
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- {
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- {
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- {
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- {
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- {
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- {
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- {
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- {
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- ]
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- },
- {
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- {
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- {
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- },
- {
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- {
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- {
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- },
- {
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- {
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- {
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- {
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- "probe_id": "system/uint64/1",
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- {
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- {
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- {
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- "template": "train"
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- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "dev_templates",
- "parameters": {
- "protocol": "darkened-lp1",
- "group": "dev"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "dev_probes",
- "parameters": {
- "protocol": "darkened-lp1",
- "group": "dev"
- },
- "template": "probes"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "test_templates",
- "parameters": {
- "protocol": "darkened-lp1",
- "group": "eval"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "test_probes",
- "parameters": {
- "protocol": "darkened-lp1",
- "group": "eval"
- },
- "template": "probes"
- }
- ]
- },
- {
- "name": "darkened-lp2",
- "template": "advanced_face_recognition",
- "sets": [
- {
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- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1"
- },
- "view": "Train",
- "name": "train",
- "parameters": {
- "protocol": "darkened-lp2"
- },
- "template": "train"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "dev_templates",
- "parameters": {
- "protocol": "darkened-lp2",
- "group": "dev"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "dev_probes",
- "parameters": {
- "protocol": "darkened-lp2",
- "group": "dev"
- },
- "template": "probes"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "eye_centers": "system/eye_positions/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "template_id": "system/uint64/1"
- },
- "view": "Templates",
- "name": "test_templates",
- "parameters": {
- "protocol": "darkened-lp2",
- "group": "eval"
- },
- "template": "templates"
- },
- {
- "outputs": {
- "image": "system/array_3d_uint8/1",
- "probe_id": "system/uint64/1",
- "file_id": "system/uint64/1",
- "client_id": "system/uint64/1",
- "eye_centers": "system/eye_positions/1",
- "template_ids": "system/array_1d_uint64/1"
- },
- "view": "Probes",
- "name": "test_probes",
- "parameters": {
- "protocol": "darkened-lp2",
- "group": "eval"
- },
- "template": "probes"
- }
- ]
- }
- ]
- }
- }
-]
diff --git a/conda/js/test/test_dfs.json b/conda/js/test/test_dfs.json
deleted file mode 100644
index 7b3fe3bb5f65a8a2e80c718f5f0966d65b31f224..0000000000000000000000000000000000000000
--- a/conda/js/test/test_dfs.json
+++ /dev/null
@@ -1,427 +0,0 @@
-[
- {
- "name": "aythamimm/keystroke_model/6",
- "contents": {
- "nationality_average": [
- 0,
- "float64"
- ],
- "#description": "Basic format containing a one-dimensional array of float values",
- "email_average": [
- 0,
- "float64"
- ],
- "family_name_std": [
- 0,
- "float64"
- ],
- "family_name_average": [
- 0,
- "float64"
- ],
- "id_number_std": [
- 0,
- "float64"
- ],
- "given_name_std": [
- 0,
- "float64"
- ],
- "email_std": [
- 0,
- "float64"
- ],
- "id_number_average": [
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- "float64"
- ],
- "nationality_std": [
- 0,
- "float64"
- ],
- "given_name_average": [
- 0,
- "float64"
- ]
- }
- },
- {
- "name": "elie_khoury/string_probe_scores/1",
- "contents": {
- "client_identity": "string",
- "scores": [
- 0,
- {
- "template_identity": "string",
- "score": "float64"
- }
- ],
- "#description": "Score for verification"
- }
- },
- {
- "name": "plot/bar/1",
- "contents": {
- "#description": "Array of bar plots",
- "data": [
- 0,
- {
- "label": "string",
- "x": [
- 0,
- "float64"
- ],
- "y": [
- 0,
- "float64"
- ]
- }
- ]
- }
- },
- {
- "name": "plot/isoroc/1",
- "contents": {
- "#description": "A set of ROC plots as described by ISO/IEC 19795-1:2006(E)",
- "data": [
- 0,
- {
- "label": "string",
- "number_of_positives": "uint64",
- "number_of_negatives": "uint64",
- "false_positives": [
- 0,
- "float64"
- ],
- "false_negatives": [
- 0,
- "float64"
- ]
- }
- ]
- }
- },
- {
- "name": "plot/scatter/1",
- "contents": {
- "#description": "A set of 2-D scatter plots with X/Y and a label",
- "data": [
- 0,
- {
- "y": [
- 0,
- "float64"
- ],
- "x": [
- 0,
- "float64"
- ],
- "label": "string"
- }
- ]
- }
- },
- {
- "name": "system/array_1d_floats/1",
- "contents": {
- "#description": "Basic format containing a one-dimensional array of float values",
- "value": [
- 0,
- "float64"
- ]
- }
- },
- {
- "name": "system/array_1d_text/1",
- "contents": {
- "text": [
- 0,
- "string"
- ]
- }
- },
- {
- "name": "system/array_1d_uint64/1",
- "contents": {
- "#description": "Basic format containing a one-dimensional array of unsigned integer (64 bits) values",
- "value": [
- 0,
- "uint64"
- ]
- }
- },
- {
- "name": "system/array_2d_floats/1",
- "contents": {
- "#description": "Basic format containing a two-dimensional array of float values",
- "value": [
- 0,
- 0,
- "float64"
- ]
- }
- },
- {
- "name": "system/array_2d_uint8/1",
- "contents": {
- "#description": "Two-dimensional array of 8 unsigned integer values",
- "value": [
- 0,
- 0,
- "uint8"
- ]
- }
- },
- {
- "name": "system/array_3d_uint8/1",
- "contents": {
- "value": [
- 0,
- 0,
- 0,
- "uint8"
- ]
- }
- },
- {
- "name": "system/coordinates/1",
- "contents": {
- "#description": "Contains the coordinates of a pixel",
- "y": "int32",
- "x": "int32"
- }
- },
- {
- "name": "system/eye_positions/1",
- "contents": {
- "#description": "The position of the eyes of a person in an image",
- "right": "system/coordinates/1",
- "left": "system/coordinates/1"
- }
- },
- {
- "name": "system/integer/1",
- "contents": {
- "#description": "Single (32 bits) integer value",
- "value": "int32"
- }
- },
- {
- "name": "system/kboc16_keystroke/1",
- "contents": {
- "#description": "Raw KBOC16 keystroke data",
- "timestamps": [
- 0,
- "int32"
- ],
- "key_events": [
- 0,
- "string"
- ]
- }
- },
- {
- "name": "system/text/1",
- "contents": {
- "#description": "Basic format containing a text",
- "text": "string"
- }
- },
- {
- "name": "system/uint64/1",
- "contents": {
- "#description": "Basic format containing only a single unsigned integer (64 bits) value",
- "value": "uint64"
- }
- },
- {
- "name": "tutorial/atvs_keystroke/1",
- "contents": {
- "#description": "Raw ATVS keystroke data",
- "holdtime": {
- "given_name": [
- 0,
- "int32"
- ],
- "family_name": [
- 0,
- "int32"
- ],
- "email": [
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- "int32"
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- "id_number": [
- 0,
- "int32"
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- "pplatency": {
- "given_name": [
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- "int32"
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- "family_name": [
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- "int32"
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- "email": [
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- },
- {
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- "contents": {
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- "float64"
- ],
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- ],
- "weights": [
- 0,
- 0,
- "float64"
- ],
- "biases": [
- 0,
- "float64"
- ],
- "#description": "Linear Projection container"
- }
- },
- {
- "name": "tutorial/probe_scores/1",
- "contents": {
- "client_identity": "uint64",
- "scores": [
- 0,
- {
- "template_identity": "uint64",
- "score": "float64"
- }
- ],
- "#description": "Container that stores the scores of a probe"
- }
- },
- {
- "name": "user/linear_machine/1",
- "contents": {
- "input_divide": [
- 0,
- "float64"
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- "float64"
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- "float64"
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- "biases": [
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- "float64"
- ]
- }
- },
- {
- "name": "user/probe_scores/1",
- "contents": {
- "client_identity": "uint64",
- "#description": "Score for verification",
- "scores": [
- 0,
- {
- "template_identity": "uint64",
- "score": "float64"
- }
- ]
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-]
diff --git a/conda/js/test/test_exps.json b/conda/js/test/test_exps.json
deleted file mode 100644
index 3a9cf6fa96cc3e76ad13091788d1b0442d9156e4..0000000000000000000000000000000000000000
--- a/conda/js/test/test_exps.json
+++ /dev/null
@@ -1,787 +0,0 @@
-[
- {
- "name": "test/test/iris_advanced/1/iris",
- "contents": {
- "description": "",
- "analyzers": {
- "analyzer": {
- "algorithm": "test/iris_analyzer/1",
- "inputs": {
- "scores": "scores",
- "species": "species"
- },
- "parameters": {}
- }
- },
- "blocks": {
- "pre_testing": {
- "algorithm": "test/iris_preprocessor/1",
- "inputs": {
- "measurements": "measurements"
- },
- "outputs": {
- "measurements": "measurements"
- },
- "parameters": {}
- },
- "pre_training": {
- "algorithm": "test/iris_preprocessor/1",
- "inputs": {
- "measurements": "measurements"
- },
- "outputs": {
- "measurements": "measurements"
- },
- "parameters": {}
- },
- "testing_alg": {
- "algorithm": "test/iris_testing/1",
- "inputs": {
- "lda_machine": "lda_machine",
- "measurements": "measurements"
- },
- "outputs": {
- "scores": "scores"
- },
- "parameters": {}
- },
- "training_alg": {
- "algorithm": "test/iris_training/1",
- "inputs": {
- "measurements": "measurements",
- "species": "species"
- },
- "outputs": {
- "lda_machine": "lda_machine"
- },
- "parameters": {}
- }
- },
- "datasets": {
- "testing_data": {
- "database": "iris/1",
- "protocol": "Main",
- "set": "training"
- },
- "training_data": {
- "database": "iris/1",
- "protocol": "Main",
- "set": "testing"
- }
- },
- "globals": {
- "queue": "Default",
- "environment": {
- "name": "Scientific Python 2.7",
- "version": "0.0.4"
- }
- }
- }
- },
- {
- "name": "tutorial/tutorial/eigenface/1/atnt-eigenfaces-7-comps",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "scores": "scores"
- },
- "algorithm": "tutorial/postperf_iso/1"
- }
- },
- "datasets": {
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- "set": "templates",
- "protocol": "idiap",
- "database": "atnt/3"
- },
- "train": {
- "set": "train",
- "protocol": "idiap",
- "database": "atnt/3"
- },
- "probes": {
- "set": "probes",
- "protocol": "idiap",
- "database": "atnt/3"
- }
- },
- "blocks": {
- "scoring": {
- "inputs": {
- "probe_projections": "probe_builder_projections",
- "comparison_ids": "probes_template_ids",
- "probe_id": "probes_probe_id",
- "template_id": "templates_template_id",
- "probe_client_id": "probes_client_id",
- "template_client_id": "templates_client_id",
- "template_projections": "template_builder_projections"
- },
- "algorithm": "tutorial/linear_machines_scoring/4",
- "outputs": {
- "scores": "scores"
- }
- },
- "linear_machine_training": {
- "inputs": {
- "image": "image"
- },
- "algorithm": "tutorial/pca/2",
- "outputs": {
- "subspace": "subspace"
- }
- },
- "template_builder": {
- "inputs": {
- "image": "image",
- "subspace": "subspace",
- "id": "template_id"
- },
- "algorithm": "tutorial/linear_machine_projection/4",
- "outputs": {
- "projections": "projections"
- }
- },
- "probe_builder": {
- "inputs": {
- "image": "image",
- "subspace": "subspace",
- "id": "probe_id"
- },
- "algorithm": "tutorial/linear_machine_projection/4",
- "outputs": {
- "projections": "projections"
- }
- }
- },
- "globals": {
- "queue": "Default",
- "environment": {
- "version": "0.0.4",
- "name": "Scientific Python 2.7"
- },
- "tutorial/pca/2": {
- "number-of-components": 7
- }
- }
- }
- },
- {
- "name": "user/user/double/1/double_error",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_analyzer/1"
- }
- },
- "datasets": {
- "set": {
- "set": "set",
- "protocol": "protocol",
- "database": "simple/1"
- }
- },
- "blocks": {
- "echo1": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo/1",
- "outputs": {
- "out_data": "out"
- }
- },
- "echo2": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_error/1",
- "outputs": {
- "out_data": "out"
- }
- }
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- "globals": {
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- "name": "Python 2.7"
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- }
- }
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- {
- "name": "user/user/double/1/double",
- "contents": {
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- },
- "algorithm": "user/integers_echo_analyzer/1"
- }
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- "protocol": "protocol",
- "database": "simple/1"
- }
- },
- "blocks": {
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- },
- "algorithm": "user/integers_echo/1",
- "outputs": {
- "out_data": "out"
- }
- },
- "echo2": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo/1",
- "outputs": {
- "out_data": "out"
- }
- }
- },
- "globals": {
- "queue": "queue",
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- "version": "1.2.0",
- "name": "Python 2.7"
- }
- }
- }
- },
- {
- "name": "user/user/fisherface/1/atnt",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "scores_dev": "scoring_dev_scores",
- "scores_test": "scoring_test_scores"
- },
- "algorithm": "user/eerhter_postperf/1"
- }
- },
- "datasets": {
- "dev_probes": {
- "set": "dev_probes",
- "protocol": "idiap_test_eyepos",
- "database": "atnt/3"
- },
- "test_templates": {
- "set": "test_templates",
- "protocol": "idiap_test_eyepos",
- "database": "atnt/3"
- },
- "train": {
- "set": "train",
- "protocol": "idiap_test_eyepos",
- "database": "atnt/3"
- },
- "dev_templates": {
- "set": "dev_templates",
- "protocol": "idiap_test_eyepos",
- "database": "atnt/3"
- },
- "test_probes": {
- "set": "test_probes",
- "protocol": "idiap_test_eyepos",
- "database": "atnt/3"
- }
- },
- "blocks": {
- "template_builder_test": {
- "inputs": {
- "image": "image_gray",
- "subspace_lda": "subspace_lda",
- "id": "template_id",
- "subspace_pca": "subspace_pca"
- },
- "algorithm": "user/linear_machine_x2_projection/1",
- "outputs": {
- "projections": "projections"
- }
- },
- "linear_machine_training": {
- "inputs": {
- "image": "image_gray",
- "client_id": "client_id"
- },
- "algorithm": "user/pca_lda/1",
- "outputs": {
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- "subspace_pca": "subspace_pca"
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- "id": "template_id",
- "subspace_pca": "subspace_pca"
- },
- "algorithm": "user/linear_machine_x2_projection/1",
- "outputs": {
- "projections": "projections"
- }
- },
- "cropping_rgb_probe_test": {
- "inputs": {
- "image": "image",
- "eye_centers": "eye_centers"
- },
- "algorithm": "user/cropping_rgb/1",
- "outputs": {
- "cropped_image": "image_gray"
- }
- },
- "cropping_rgb_ubm": {
- "inputs": {
- "image": "image",
- "eye_centers": "eye_centers"
- },
- "algorithm": "user/cropping_rgb/1",
- "outputs": {
- "cropped_image": "image_gray"
- }
- },
- "cropping_rgb_template_dev": {
- "inputs": {
- "image": "image",
- "eye_centers": "eye_centers"
- },
- "algorithm": "user/cropping_rgb/1",
- "outputs": {
- "cropped_image": "image_gray"
- }
- },
- "probe_builder_test": {
- "inputs": {
- "image": "image_gray",
- "subspace_lda": "subspace_lda",
- "id": "probe_id",
- "subspace_pca": "subspace_pca"
- },
- "algorithm": "user/linear_machine_x2_projection/1",
- "outputs": {
- "projections": "projections"
- }
- },
- "cropping_rgb_template_test": {
- "inputs": {
- "image": "image",
- "eye_centers": "eye_centers"
- },
- "algorithm": "user/cropping_rgb/1",
- "outputs": {
- "cropped_image": "image_gray"
- }
- },
- "cropping_rgb_probe_dev": {
- "inputs": {
- "image": "image",
- "eye_centers": "eye_centers"
- },
- "algorithm": "user/cropping_rgb/1",
- "outputs": {
- "cropped_image": "image_gray"
- }
- },
- "scoring_dev": {
- "inputs": {
- "probe_projections": "probe_builder_dev_projections",
- "comparison_ids": "dev_probes_template_ids",
- "probe_id": "dev_probes_probe_id",
- "template_id": "dev_templates_template_id",
- "probe_client_id": "dev_probes_client_id",
- "template_client_id": "dev_templates_client_id",
- "template_projections": "template_builder_dev_projections"
- },
- "algorithm": "user/linear_machines_scoring/1",
- "outputs": {
- "scores": "scores"
- }
- },
- "scoring_test": {
- "inputs": {
- "probe_projections": "probe_builder_test_projections",
- "comparison_ids": "test_probes_template_ids",
- "probe_id": "test_probes_probe_id",
- "template_id": "test_templates_template_id",
- "probe_client_id": "test_probes_client_id",
- "template_client_id": "test_templates_client_id",
- "template_projections": "template_builder_test_projections"
- },
- "algorithm": "user/linear_machines_scoring/1",
- "outputs": {
- "scores": "scores"
- }
- },
- "probe_builder_dev": {
- "inputs": {
- "image": "image_gray",
- "subspace_lda": "subspace_lda",
- "id": "probe_id",
- "subspace_pca": "subspace_pca"
- },
- "algorithm": "user/linear_machine_x2_projection/1",
- "outputs": {
- "projections": "projections"
- }
- }
- },
- "globals": {
- "queue": "queue",
- "environment": {
- "version": "1.2.0",
- "name": "Python 2.7"
- },
- "user/pca_lda/1": {
- "number-of-pca-components": 5,
- "number-of-lda-components": 2
- },
- "user/cropping_rgb/1": {
- "left-eye-x": 48,
- "left-eye-y": 16,
- "crop-height": 80,
- "crop-width": 64,
- "right-eye-x": 15,
- "right-eye-y": 16
- }
- }
- }
- },
- {
- "name": "user/user/single/1/single_add2",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_analyzer/1"
- }
- },
- "datasets": {
- "set": {
- "set": "set",
- "protocol": "protocol",
- "database": "simple/1"
- }
- },
- "blocks": {
- "echo": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_add/1",
- "outputs": {
- "out_data": "out"
- }
- }
- },
- "globals": {
- "queue": "queue",
- "environment": {
- "version": "1.2.0",
- "name": "Python 2.7"
- },
- "user/integers_add/1": {
- "offset": 2
- }
- }
- }
- },
- {
- "name": "user/user/single/1/single_add",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_analyzer/1"
- }
- },
- "datasets": {
- "set": {
- "set": "set",
- "protocol": "protocol",
- "database": "simple/1"
- }
- },
- "blocks": {
- "echo": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_add/1",
- "outputs": {
- "out_data": "out"
- }
- }
- },
- "globals": {
- "queue": "queue",
- "environment": {
- "version": "1.2.0",
- "name": "Python 2.7"
- },
- "user/integers_add/1": {
- "offset": 2
- }
- }
- }
- },
- {
- "name": "user/user/single/1/single",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_analyzer/1"
- }
- },
- "datasets": {
- "set": {
- "set": "set",
- "protocol": "protocol",
- "database": "simple/1"
- }
- },
- "blocks": {
- "echo": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo/1",
- "outputs": {
- "out_data": "out"
- }
- }
- },
- "globals": {
- "queue": "queue",
- "environment": {
- "version": "1.2.0",
- "name": "Python 2.7"
- }
- }
- }
- },
- {
- "name": "user/user/single/1/single_large",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_mean_analyzer/1",
- "parameters": {}
- }
- },
- "datasets": {
- "set": {
- "set": "set",
- "protocol": "protocol2",
- "database": "simple/1"
- }
- },
- "blocks": {
- "echo": {
- "inputs": {
- "in_data": "in"
- },
- "nb_slots": 2,
- "algorithm": "user/integers_echo/1",
- "parameters": {},
- "outputs": {
- "out_data": "out"
- }
- }
- },
- "globals": {
- "queue": "queue",
- "environment": {
- "version": "1.2.0",
- "name": "Python 2.7"
- }
- }
- }
- },
- {
- "name": "user/user/single/1/single_sleep",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_analyzer/1"
- }
- },
- "datasets": {
- "set": {
- "set": "set",
- "protocol": "protocol",
- "database": "simple/1"
- }
- },
- "blocks": {
- "echo": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_sleep/1",
- "outputs": {
- "out_data": "out"
- }
- }
- },
- "globals": {
- "queue": "queue",
- "environment": {
- "version": "1.2.0",
- "name": "Python 2.7"
- }
- }
- }
- },
- {
- "name": "user/user/triangle/1/triangle",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_analyzer/1"
- }
- },
- "datasets": {
- "set": {
- "set": "set",
- "protocol": "protocol",
- "database": "simple/1"
- },
- "set2": {
- "set": "set2",
- "protocol": "protocol",
- "database": "simple/1"
- }
- },
- "blocks": {
- "echo1": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo/1",
- "outputs": {
- "out_data": "out"
- }
- },
- "echo2": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo/1",
- "outputs": {
- "out_data": "out"
- }
- },
- "echo3": {
- "inputs": {
- "in_data2": "in2",
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_ignore/1",
- "outputs": {
- "out_data": "out"
- }
- }
- },
- "globals": {
- "queue": "queue",
- "environment": {
- "version": "1.2.0",
- "name": "Python 2.7"
- }
- }
- }
- },
- {
- "name": "user/user/triangle/1/triangle_sleep",
- "contents": {
- "analyzers": {
- "analysis": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_analyzer/1"
- }
- },
- "datasets": {
- "set": {
- "set": "set",
- "protocol": "protocol",
- "database": "simple/1"
- },
- "set2": {
- "set": "set2",
- "protocol": "protocol",
- "database": "simple/1"
- }
- },
- "blocks": {
- "echo1": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_sleep/1",
- "outputs": {
- "out_data": "out"
- }
- },
- "echo2": {
- "inputs": {
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_sleep/1",
- "outputs": {
- "out_data": "out"
- }
- },
- "echo3": {
- "inputs": {
- "in_data2": "in2",
- "in_data": "in"
- },
- "algorithm": "user/integers_echo_ignore/1",
- "outputs": {
- "out_data": "out"
- }
- }
- },
- "globals": {
- "queue": "queue",
- "environment": {
- "version": "1.2.0",
- "name": "Python 2.7"
- }
- }
- }
- }
-]
diff --git a/conda/js/test/test_libs.json b/conda/js/test/test_libs.json
deleted file mode 100644
index 33d74de33a543aaa411a36736c9bc317da96a903..0000000000000000000000000000000000000000
--- a/conda/js/test/test_libs.json
+++ /dev/null
@@ -1,18 +0,0 @@
-[
- {
- "name": "user/anotherlib/1",
- "contents": {
- "uses": {},
- "language": "python"
- }
- },
- {
- "name": "user/thelib/1",
- "contents": {
- "uses": {
- "lib": "user/anotherlib/1"
- },
- "language": "python"
- }
- }
-]
diff --git a/conda/js/test/test_plotterparameters.json b/conda/js/test/test_plotterparameters.json
deleted file mode 100644
index 70b6841841c27718893a13c6bfb39cb2e66cfd3f..0000000000000000000000000000000000000000
--- a/conda/js/test/test_plotterparameters.json
+++ /dev/null
@@ -1,42 +0,0 @@
-[
- {
- "name": "plot/bar/1",
- "contents": {
- "description": "Default parameters for bar plots",
- "plotter": "plot/bar/1",
- "data": {
- "title-fontsize": 12,
- "bar-norm": true,
- "axis-fontsize": 10,
- "height": 600,
- "width": 800,
- "grid": true,
- "bar-alpha": 0.75,
- "legend-fontsize": 8,
- "legend-loc": "best",
- "dpi": 120
- }
- }
- },
- {
- "name": "plot/isoroc/1",
- "contents": {
- "description": "Default parameters for an ISO/ROC curve",
- "plotter": "plot/isoroc/1",
- "data": {
- "ylim-bottom": 0,
- "title-fontsize": 12,
- "axis-fontsize": 10,
- "height": 600,
- "width": 800,
- "grid": true,
- "ylim-top": 100,
- "xlim-right": 100,
- "legend-fontsize": 8,
- "legend-loc": "best",
- "xlim-left": 0,
- "dpi": 120
- }
- }
- }
-]
diff --git a/conda/js/test/test_plotters.json b/conda/js/test/test_plotters.json
deleted file mode 100644
index e77da6e8f7cb37d84b4a0c6fa9bc30bc1a8c4f7a..0000000000000000000000000000000000000000
--- a/conda/js/test/test_plotters.json
+++ /dev/null
@@ -1,341 +0,0 @@
-[
- {
- "name": "plot/bar/1",
- "contents": {
- "description": "Basic bar plotter for simple histograms",
- "language": "python",
- "parameters": {
- "axis-fontsize": {
- "default": 10,
- "description": "Controls the axis font size (labels and values)",
- "type": "uint16"
- },
- "bar-alpha": {
- "default": 0.75,
- "description": "Value for the alpha effect in the bar plot",
- "type": "float64"
- },
- "bar-norm": {
- "default": true,
- "description": "If set to true will normalize the distribution between 0-1",
- "type": "bool"
- },
- "bar_attributes": {
- "default": "",
- "description": "Bar attributes passed directly to Matplotlib",
- "type": "string"
- },
- "content_type": {
- "choice": [
- "image/png",
- "image/jpeg",
- "application/pdf"
- ],
- "default": "image/png",
- "description": "The type of image returned",
- "type": "string"
- },
- "dpi": {
- "default": 60,
- "description": "Dots-per-inch in raster image formats",
- "type": "uint16"
- },
- "grid": {
- "default": false,
- "description": "If we should draw grid lines or not for the plot",
- "type": "bool"
- },
- "height": {
- "default": 300,
- "description": "Height of the resulting image in pixels",
- "type": "uint16"
- },
- "legend": {
- "default": "",
- "description": "Short description of the data, to be added to the plot",
- "type": "string"
- },
- "legend-bbox-to-anchor": {
- "default": "1.0&1.0",
- "description": "Specify any arbitrary location for the legend ",
- "type": "string"
- },
- "legend-fontsize": {
- "default": 12,
- "description": "Controls the font size of the legend",
- "type": "uint16"
- },
- "legend-loc": {
- "default": "best",
- "description": "The location of the legend",
- "type": "string"
- },
- "title": {
- "default": "Bar plot",
- "description": "The title for this plot",
- "type": "string"
- },
- "title-fontsize": {
- "default": 10,
- "description": "Controls the title font size",
- "type": "uint16"
- },
- "width": {
- "default": 400,
- "description": "Width of the resulting image in pixels",
- "type": "uint16"
- },
- "xaxis_multiplier": {
- "default": 1,
- "description": "The multiplication factor for the X-axis (horizontal)",
- "type": "float64"
- },
- "xlabel": {
- "default": "",
- "description": "The label of the X-axis (horizontal)",
- "type": "string"
- },
- "yaxis_log": {
- "default": false,
- "description": "If Y-axis (vertical) should be in log-scale",
- "type": "bool"
- },
- "yaxis_multiplier": {
- "default": 1,
- "description": "The multiplication factor for the Y-axis (vertical)",
- "type": "float64"
- },
- "ylabel": {
- "default": "",
- "description": "The label of the Y-axis (vertical)",
- "type": "string"
- }
- },
- "dataformat": "plot/bar/1",
- "uses": {
- "baselib": "plot/baselib/1"
- }
- }
- },
- {
- "name": "plot/isoroc/1",
- "contents": {
- "description": "ROC/DET plotter following the ISO/IEC 19795-1:2006(E) standard",
- "language": "python",
- "parameters": {
- "axis-fontsize": {
- "default": 10,
- "description": "Controls the axis font size (labels and values)",
- "type": "uint16"
- },
- "content_type": {
- "choice": [
- "image/png",
- "image/jpeg",
- "application/pdf"
- ],
- "default": "image/png",
- "description": "The type of image returned",
- "type": "string"
- },
- "det": {
- "default": false,
- "description": "If set, plot a DET curve instead of a ROC",
- "type": "bool"
- },
- "dpi": {
- "default": 60,
- "description": "Dots-per-inch in raster image formats",
- "type": "uint16"
- },
- "grid": {
- "default": true,
- "description": "If we should draw grid lines or not for the plot",
- "type": "bool"
- },
- "height": {
- "default": 300,
- "description": "Height of the resulting image in pixels",
- "type": "uint16"
- },
- "legend": {
- "default": "",
- "description": "Short description of the data, to be added to the plot",
- "type": "string"
- },
- "legend-fontsize": {
- "default": 12,
- "description": "Controls the font size of the legend",
- "type": "uint16"
- },
- "legend-loc": {
- "default": "best",
- "description": "The location of the legend",
- "type": "string"
- },
- "line_attributes": {
- "default": "",
- "description": "Scatter/Line attributes passed directly to Matplotlib",
- "type": "string"
- },
- "title": {
- "default": "ISO/IEC 19795-1:2006(E) ROC",
- "description": "The title for this plot",
- "type": "string"
- },
- "title-fontsize": {
- "default": 10,
- "description": "Controls the title font size",
- "type": "uint16"
- },
- "width": {
- "default": 400,
- "description": "Width of the resulting image in pixels",
- "type": "uint16"
- },
- "xaxis_log": {
- "default": false,
- "description": "If X-axis (horizontal) should be in log-scale",
- "type": "bool"
- },
- "xaxis_multiplier": {
- "default": "100.0",
- "description": "The multiplication factor for the X-axis (horizontal)",
- "type": "float64"
- },
- "xlabel": {
- "default": "False Positives (False Match Rate), in %",
- "description": "The label of the X-axis (horizontal)",
- "type": "string"
- },
- "xlim-left": {
- "default": "0.0",
- "description": "",
- "type": "float64"
- },
- "xlim-right": {
- "default": "100.0",
- "description": "",
- "type": "float64"
- },
- "yaxis_log": {
- "default": false,
- "description": "If Y-axis (vertical) should be in log-scale",
- "type": "bool"
- },
- "yaxis_multiplier": {
- "default": "100.0",
- "description": "The multiplication factor for the Y-axis (vertical)",
- "type": "float64"
- },
- "ylabel": {
- "default": "True Positives (1 - False Non-Match Rate), in %",
- "description": "The label of the Y-axis (vertical)",
- "type": "string"
- },
- "ylim-bottom": {
- "default": "0.0",
- "description": "",
- "type": "float64"
- },
- "ylim-top": {
- "default": "100.0",
- "description": "",
- "type": "float64"
- }
- },
- "dataformat": "plot/isoroc/1",
- "uses": {
- "baselib": "plot/baselib/1"
- }
- }
- },
- {
- "name": "plot/scatter/1",
- "contents": {
- "description": "Basic scatter plotter for simple lines",
- "language": "python",
- "parameters": {
- "content_type": {
- "choice": [
- "image/png",
- "image/jpeg",
- "application/pdf"
- ],
- "default": "image/png",
- "description": "The type of image returned",
- "type": "string"
- },
- "dpi": {
- "default": 60,
- "description": "Dots-per-inch in raster image formats",
- "type": "uint16"
- },
- "grid": {
- "default": false,
- "description": "If we should draw grid lines or not for the plot",
- "type": "bool"
- },
- "height": {
- "default": 300,
- "description": "Height of the resulting image in pixels",
- "type": "uint16"
- },
- "legend": {
- "default": "",
- "description": "Short description of the data, to be added to the plot",
- "type": "string"
- },
- "line_attributes": {
- "default": "",
- "description": "Scatter/Line attributes passed directly to Matplotlib",
- "type": "string"
- },
- "title": {
- "default": "Scatter plot",
- "description": "The title for this plot",
- "type": "string"
- },
- "width": {
- "default": 400,
- "description": "Width of the resulting image in pixels",
- "type": "uint16"
- },
- "xaxis_log": {
- "default": false,
- "description": "If X-axis (horizontal) should be in log-scale",
- "type": "bool"
- },
- "xaxis_multiplier": {
- "default": "1.0",
- "description": "The multiplication factor for the X-axis (horizontal)",
- "type": "float64"
- },
- "xlabel": {
- "default": "X",
- "description": "The label of the X-axis (horizontal)",
- "type": "string"
- },
- "yaxis_log": {
- "default": false,
- "description": "If Y-axis (vertical) should be in log-scale",
- "type": "bool"
- },
- "yaxis_multiplier": {
- "default": "1.0",
- "description": "The multiplication factor for the Y-axis (vertical)",
- "type": "float64"
- },
- "ylabel": {
- "default": "Y",
- "description": "The label of the Y-axis (vertical)",
- "type": "string"
- }
- },
- "dataformat": "plot/scatter/1",
- "uses": {
- "baselib": "plot/baselib/1"
- }
- }
- }
-]
diff --git a/conda/js/test/test_tcs.json b/conda/js/test/test_tcs.json
deleted file mode 100644
index 4ccebb7c004a23035c569c97fa17822ba5ea45f6..0000000000000000000000000000000000000000
--- a/conda/js/test/test_tcs.json
+++ /dev/null
@@ -1,2934 +0,0 @@
-[
- {
- "name": "test/iris_advanced/1",
- "contents": {
- "analyzers": [
- {
- "inputs": [
- "scores",
- "species"
- ],
- "name": "analyzer",
- "synchronized_channel": "testing_data"
- }
- ],
- "blocks": [
- {
- "inputs": [
- "measurements",
- "species"
- ],
- "name": "training_alg",
- "outputs": [
- "lda_machine"
- ],
- "synchronized_channel": "training_data"
- },
- {
- "inputs": [
- "lda_machine",
- "measurements"
- ],
- "name": "testing_alg",
- "outputs": [
- "scores"
- ],
- "synchronized_channel": "testing_data"
- },
- {
- "inputs": [
- "measurements"
- ],
- "name": "pre_training",
- "outputs": [
- "measurements"
- ],
- "synchronized_channel": "training_data"
- },
- {
- "inputs": [
- "measurements"
- ],
- "name": "pre_testing",
- "outputs": [
- "measurements"
- ],
- "synchronized_channel": "testing_data"
- }
- ],
- "connections": [
- {
- "channel": "testing_data",
- "from": "testing_alg.scores",
- "to": "analyzer.scores"
- },
- {
- "channel": "training_data",
- "from": "training_alg.lda_machine",
- "to": "testing_alg.lda_machine"
- },
- {
- "channel": "testing_data",
- "from": "testing_data.species",
- "to": "analyzer.species"
- },
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- "row": 49
- }
- ],
- "dev_templates.template_id/scoring_dev.dev_templates_template_id": [
- {
- "col": 6,
- "row": 14
- },
- {
- "col": 7,
- "row": 14
- },
- {
- "col": 17,
- "row": 14
- },
- {
- "col": 17,
- "row": 27
- },
- {
- "col": 68,
- "row": 27
- },
- {
- "col": 69,
- "row": 27
- }
- ],
- "cropping_rgb_probe_dev.image_gray/probe_builder_dev.image_gray": [
- {
- "col": 50,
- "row": 19
- },
- {
- "col": 51,
- "row": 19
- },
- {
- "col": 52,
- "row": 19
- },
- {
- "col": 52,
- "row": 21
- },
- {
- "col": 57,
- "row": 21
- },
- {
- "col": 58,
- "row": 21
- }
- ],
- "linear_machine_training.subspace_pca/template_builder_test.subspace_pca": [
- {
- "col": 28,
- "row": 4
- },
- {
- "col": 29,
- "row": 4
- },
- {
- "col": 37,
- "row": 4
- },
- {
- "col": 37,
- "row": 37
- },
- {
- "col": 38,
- "row": 37
- },
- {
- "col": 39,
- "row": 37
- }
- ],
- "dev_probes.template_ids/scoring_dev.dev_probes_template_ids": [
- {
- "col": 6,
- "row": 24
- },
- {
- "col": 7,
- "row": 24
- },
- {
- "col": 21,
- "row": 24
- },
- {
- "col": 21,
- "row": 32
- },
- {
- "col": 68,
- "row": 32
- },
- {
- "col": 69,
- "row": 32
- }
- ],
- "cropping_rgb_template_dev.image_gray/template_builder_dev.image_gray": [
- {
- "col": 26,
- "row": 11
- },
- {
- "col": 27,
- "row": 11
- },
- {
- "col": 43,
- "row": 11
- },
- {
- "col": 44,
- "row": 11
- }
- ]
- },
- "blocks": {
- "template_builder_test": {
- "width": 6,
- "row": 33,
- "col": 39,
- "height": 6
- },
- "scoring_test": {
- "width": 6,
- "row": 38,
- "col": 69,
- "height": 9
- },
- "dev_templates": {
- "width": 5,
- "row": 11,
- "col": 1,
- "height": 6
- },
- "linear_machine_training": {
- "width": 6,
- "row": 2,
- "col": 22,
- "height": 4
- },
- "template_builder_dev": {
- "width": 6,
- "row": 9,
- "col": 44,
- "height": 6
- },
- "dev_probes": {
- "width": 5,
- "row": 19,
- "col": 1,
- "height": 7
- },
- "analysis": {
- "width": 6,
- "row": 34,
- "col": 81,
- "height": 4
- },
- "test_probes": {
- "width": 5,
- "row": 36,
- "col": 1,
- "height": 7
- },
- "cropping_rgb_ubm": {
- "width": 6,
- "row": 2,
- "col": 12,
- "height": 4
- },
- "train": {
- "width": 5,
- "row": 4,
- "col": 1,
- "height": 5
- },
- "cropping_rgb_probe_test": {
- "width": 6,
- "row": 47,
- "col": 19,
- "height": 4
- },
- "probe_builder_test": {
- "width": 6,
- "row": 47,
- "col": 48,
- "height": 6
- },
- "cropping_rgb_template_test": {
- "width": 6,
- "row": 33,
- "col": 18,
- "height": 4
- },
- "cropping_rgb_probe_dev": {
- "width": 6,
- "row": 17,
- "col": 44,
- "height": 4
- },
- "scoring_dev": {
- "width": 6,
- "row": 24,
- "col": 69,
- "height": 9
- },
- "test_templates": {
- "width": 5,
- "row": 28,
- "col": 1,
- "height": 6
- },
- "cropping_rgb_template_dev": {
- "width": 6,
- "row": 9,
- "col": 20,
- "height": 4
- },
- "probe_builder_dev": {
- "width": 6,
- "row": 19,
- "col": 58,
- "height": 6
- }
- },
- "channel_colors": {
- "dev_probes": "#ff0000",
- "test_templates": "#9900ff",
- "train": "#0000FF",
- "dev_templates": "#00ff00",
- "test_probes": "#7F6000"
- }
- }
- }
- },
- {
- "name": "user/single/1",
- "contents": {
- "datasets": [
- {
- "outputs": [
- "out"
- ],
- "name": "set"
- }
- ],
- "blocks": [
- {
- "inputs": [
- "in"
- ],
- "synchronized_channel": "set",
- "name": "echo",
- "outputs": [
- "out"
- ]
- }
- ],
- "description": "Single integer echoing on a single channel",
- "analyzers": [
- {
- "inputs": [
- "in"
- ],
- "synchronized_channel": "set",
- "name": "analysis"
- }
- ],
- "connections": [
- {
- "to": "echo.in",
- "from": "set.out",
- "channel": "set"
- },
- {
- "to": "analysis.in",
- "from": "echo.out",
- "channel": "set"
- }
- ],
- "representation": {
- "connections": {
- "echo.out/analysis.in": [
- {
- "col": 12,
- "row": 2
- },
- {
- "col": 13,
- "row": 2
- },
- {
- "col": 13,
- "row": 2
- },
- {
- "col": 14,
- "row": 2
- }
- ],
- "set.out/echo.in": [
- {
- "col": 4,
- "row": 2
- },
- {
- "col": 5,
- "row": 2
- },
- {
- "col": 5,
- "row": 2
- },
- {
- "col": 6,
- "row": 2
- }
- ]
- },
- "blocks": {
- "set": {
- "width": 5,
- "row": 0,
- "col": -1,
- "height": 3
- },
- "analysis": {
- "width": 6,
- "row": 0,
- "col": 14,
- "height": 3
- },
- "echo": {
- "width": 6,
- "row": 0,
- "col": 6,
- "height": 3
- }
- },
- "channel_colors": {
- "set": "#0000FF"
- }
- }
- }
- },
- {
- "name": "user/triangle/1",
- "contents": {
- "datasets": [
- {
- "outputs": [
- "out"
- ],
- "name": "set"
- },
- {
- "outputs": [
- "out"
- ],
- "name": "set2"
- }
- ],
- "blocks": [
- {
- "inputs": [
- "in"
- ],
- "synchronized_channel": "set",
- "name": "echo1",
- "outputs": [
- "out"
- ]
- },
- {
- "inputs": [
- "in"
- ],
- "synchronized_channel": "set2",
- "name": "echo2",
- "outputs": [
- "out"
- ]
- },
- {
- "inputs": [
- "in",
- "in2"
- ],
- "synchronized_channel": "set",
- "name": "echo3",
- "outputs": [
- "out"
- ]
- }
- ],
- "description": "A single intersection of two de-synchronized channels",
- "analyzers": [
- {
- "inputs": [
- "in"
- ],
- "synchronized_channel": "set",
- "name": "analysis"
- }
- ],
- "connections": [
- {
- "to": "echo1.in",
- "from": "set.out",
- "channel": "set"
- },
- {
- "to": "echo2.in",
- "from": "set2.out",
- "channel": "set2"
- },
- {
- "to": "echo3.in",
- "from": "echo1.out",
- "channel": "set"
- },
- {
- "to": "echo3.in2",
- "from": "echo2.out",
- "channel": "set2"
- },
- {
- "to": "analysis.in",
- "from": "echo3.out",
- "channel": "set"
- }
- ],
- "representation": {
- "connections": {
- "set.out/echo1.in": [
- {
- "col": 4,
- "row": 2
- },
- {
- "col": 5,
- "row": 2
- },
- {
- "col": 5,
- "row": 2
- },
- {
- "col": 6,
- "row": 2
- }
- ],
- "set2.out/echo2.in": [
- {
- "col": 4,
- "row": 7
- },
- {
- "col": 5,
- "row": 7
- },
- {
- "col": 5,
- "row": 7
- },
- {
- "col": 6,
- "row": 7
- }
- ],
- "echo1.out/echo3.in": [
- {
- "col": 12,
- "row": 2
- },
- {
- "col": 13,
- "row": 2
- },
- {
- "col": 14,
- "row": 2
- },
- {
- "col": 14,
- "row": 4
- },
- {
- "col": 15,
- "row": 4
- },
- {
- "col": 16,
- "row": 4
- }
- ],
- "echo2.out/echo3.in2": [
- {
- "col": 12,
- "row": 7
- },
- {
- "col": 13,
- "row": 7
- },
- {
- "col": 14,
- "row": 7
- },
- {
- "col": 14,
- "row": 5
- },
- {
- "col": 15,
- "row": 5
- },
- {
- "col": 16,
- "row": 5
- }
- ],
- "echo3.out/analysis.in": [
- {
- "col": 22,
- "row": 4
- },
- {
- "col": 23,
- "row": 4
- },
- {
- "col": 24,
- "row": 4
- },
- {
- "col": 25,
- "row": 4
- }
- ]
- },
- "blocks": {
- "set": {
- "width": 5,
- "row": 0,
- "col": -1,
- "height": 3
- },
- "set2": {
- "width": 5,
- "row": 5,
- "col": -1,
- "height": 3
- },
- "analysis": {
- "width": 6,
- "row": 2,
- "col": 25,
- "height": 3
- },
- "echo1": {
- "width": 6,
- "row": 0,
- "col": 6,
- "height": 3
- },
- "echo2": {
- "width": 6,
- "row": 5,
- "col": 6,
- "height": 3
- },
- "echo3": {
- "width": 6,
- "row": 2,
- "col": 16,
- "height": 4
- }
- },
- "channel_colors": {
- "set": "#0000FF",
- "set2": "#6AA84F"
- }
- }
- }
- }
-]
diff --git a/conda/js/webpack.config.js b/conda/js/webpack.config.js
deleted file mode 100644
index 391ad8e8d7eae8773a4ae4f38463bb410b48d7cd..0000000000000000000000000000000000000000
--- a/conda/js/webpack.config.js
+++ /dev/null
@@ -1,159 +0,0 @@
-/* eslint-disable */
-const { resolve } = require('path');
-var webpack = require('webpack')
-const VisualizerPlugin = require('webpack-visualizer-plugin');
-const HtmlWebpackPlugin = require('html-webpack-plugin');
-const TerserPlugin = require('terser-webpack-plugin')
-
-const dist = resolve(__dirname, '../../beat/editor/js');
-
-const isExternal = (module) => module.context && module.context.indexOf('node_modules') === -1;
-
-module.exports = {
- entry: {
- main: [
- 'react-hot-loader/patch',
- // all our code starts here
- './main.jsx',
- ]
- },
- mode: 'development',
- devtool: 'inline-source-map',
- output: {
- // use [name] for sanity checks & debugging
- filename: '[name].js',
- // output in './dist/'
- path: dist,
- publicPath: '/',
- globalObject: 'this',
- },
- module: {
- rules: [
- // load our js files with babel-loader
- {
- test: /\.js(x)?$/,
- loader: 'babel-loader',
- // js deps shouldnt need any loaders
- exclude: /node_modules/
- },
- // web/shared worker files
- {
- test: /\.worker\.js$/,
- use: [
- 'worker-loader',
- 'babel-loader',
- ]
- },
- // load css with:
- {
- test: /\.css$/,
- use: [
- // style-loader -> pulls in the file initially
- 'style-loader',
- // css-loader -> handles css
- 'css-loader',
- // postcss-loader -> postprocess css (like babel for css)
- 'postcss-loader'
- ],
- exclude: /node_modules/,
- },
- {
- test: /\.css$/,
- use: [
- // style-loader -> pulls in the file initially
- 'style-loader',
- // css-loader -> handles css
- 'css-loader',
- ],
- include: /node_modules/,
- },
- // files should be handled by file-loader
- {
- test: /\.(png|jpeg(2)?|gif)(\?[a-z0-9]+)?$/,
- loader: 'file-loader'
- },
- // fonts should be handled by file-loader but with special output format
- {
- test: /\.(ttf|otf|eot|woff(2)?)(\?[a-z0-9]+)?$/,
- loader: 'file-loader?name=fonts/[name].[ext]?[hash]'
- },
- // special loader for svg
- {
- test: /\.(svg)(\?[a-z0-9]+)?$/,
- loader: 'svg-inline-loader'
- }
- ]
- },
- resolve: {
- extensions: [
- '.js', '.jsx'
- ],
- alias: {
- // icons
- /*
- 'icon': resolve(__dirname, './node_modules/feather-icons/dist/icons'),
- */
- '@store': resolve(__dirname, './src/store'),
- '@helpers': resolve(__dirname, './src/helpers'),
- '@test': resolve(__dirname, './test'),
- }
- },
- devServer: {
- },
- plugins: [
- //uses the index.ejs template to generate dynamic html pages based on hashes
- new HtmlWebpackPlugin({
- alwaysWriteToDisk: true,
- template: 'index.html'
- }),
-
-
- /*******************
- * POST-PROCESSING *
- *******************/
-
- //generate a little viz for insight into bundle contents/sizes
- new VisualizerPlugin()
- ]
-}
-
-if(process.env.NODE_ENV === 'debug'){
- // setup the devserver
- module.exports.devServer = {
- // use the history api if necessary
- historyApiFallback: true,
-
- // serve the content in the output path
- contentBase: dist,
-
- port: 9101
- }
-}
-
-if(process.env.NODE_ENV === 'test'){
- // when testing with karma, almost all plugins are useless
- module.exports.plugins = [
- new webpack.NamedModulesPlugin()
- ];
- // make sure to use fancy sourcemaps
- module.devtool = 'inline-source-map'
-}
-
-// PROD
-// TODO: pull out into different webpack config
-if (process.env.NODE_ENV === 'production') {
- module.mode = 'production';
- module.exports.output.publicPath = './';
- module.exports.plugins = [
- // make sure the env is the string 'production'
- new webpack.DefinePlugin({
- 'process.env': {
- // need the nested quotes!
- NODE_ENV: '"production"'
- }
- }),
- ].concat(module.exports.plugins);
- module.exports.optimization = {
- minimizer: [new TerserPlugin()]
- };
-}