From 0498cf31ff4cf957ed9d758d2d08daad9938ebd4 Mon Sep 17 00:00:00 2001
From: Andre Anjos <andre.dos.anjos@gmail.com>
Date: Mon, 30 Apr 2018 11:39:09 +0200
Subject: [PATCH] Support for new conda-based CI/CD pipelines
---
.gitignore | 31 ++
.gitlab-ci.yml | 182 ++++++++++++
MANIFEST.in | 5 +
README.rst | 65 +++++
beat/__init__.py | 30 ++
.../editor/__init__.py | 0
.../editor/scripts/__init__.py | 0
server.py => beat/editor/scripts/server.py | 30 +-
templates.py => beat/editor/templates.py | 0
.../editor/templates}/algorithm.jinja2 | 0
.../editor/templates}/database.jinja2 | 0
.../editor/templates}/library.jinja2 | 0
buildout.cfg | 8 +
conda/meta.yaml | 65 +++++
DEV.md => doc/DEV.md | 0
README.md => doc/README.md | 0
doc/api.rst | 10 +
doc/conf.py | 265 ++++++++++++++++++
doc/img/favicon.ico | Bin 0 -> 27438 bytes
doc/img/logo.png | Bin 0 -> 13399 bytes
doc/index.rst | 43 +++
licenses.md => doc/licenses.md | 0
doc/nitpick-exceptions.txt | 10 +
.babelrc => js/.babelrc | 0
.eslintrc.js => js/.eslintrc.js | 0
.flowconfig => js/.flowconfig | 0
.nvmrc => js/.nvmrc | 0
.postcssrc => js/.postcssrc | 0
.stylelintrc => js/.stylelintrc | 0
.tern-project => js/.tern-project | 0
index.html => js/index.html | 0
karma.conf.js => js/karma.conf.js | 0
main.css => js/main.css | 0
main.jsx => js/main.jsx | 0
package-lock.json => js/package-lock.json | 0
package.json => js/package.json | 0
{src => js/src}/components/App.jsx | 0
{src => js/src}/components/CacheInput.jsx | 0
.../src}/components/CacheInput.spec.jsx | 0
{src => js/src}/components/DeleteInputBtn.jsx | 0
.../src}/components/DeleteInputBtn.spec.jsx | 0
{src => js/src}/components/EntityDetail.jsx | 0
{src => js/src}/components/EntityHome.jsx | 0
{src => js/src}/components/EntityList.jsx | 0
.../EntityTemplateGenerationButton.jsx | 0
{src => js/src}/components/HomeContent.jsx | 0
{src => js/src}/components/InfoTooltip.jsx | 0
{src => js/src}/components/MainContent.jsx | 0
{src => js/src}/components/MainNav.jsx | 0
{src => js/src}/components/NewEntityModal.jsx | 0
.../src}/components/ParameterConsume.jsx | 0
.../src}/components/ParameterCreate.jsx | 0
{src => js/src}/components/SearchBar.jsx | 0
{src => js/src}/components/Settings.jsx | 0
{src => js/src}/components/TypedField.jsx | 0
.../src}/components/ValidSchemaBadge.jsx | 0
.../src}/components/ValidSchemaBadge.spec.jsx | 0
.../components/algorithm/AlgorithmEditor.jsx | 0
.../algorithm/AlgorithmEditor.spec.jsx | 0
{src => js/src}/components/algorithm/index.js | 0
.../components/database/DatabaseEditor.css | 0
.../components/database/DatabaseEditor.jsx | 0
.../database/DatabaseEditor.spec.jsx | 0
{src => js/src}/components/database/index.js | 0
.../dataformat/DataformatEditor.jsx | 0
.../dataformat/DataformatEditor.spec.jsx | 0
.../src}/components/dataformat/index.js | 0
.../experiment/ExperimentEditor.css | 0
.../experiment/ExperimentEditor.jsx | 0
.../experiment/ExperimentEditor.spec.jsx | 0
.../src}/components/experiment/index.js | 0
.../src}/components/library/LibraryEditor.jsx | 0
.../components/library/LibraryEditor.spec.jsx | 0
{src => js/src}/components/library/index.js | 0
.../src}/components/plotter/PlotterEditor.jsx | 0
.../components/plotter/PlotterEditor.spec.jsx | 0
{src => js/src}/components/plotter/index.js | 0
.../PlotterParameterEditor.jsx | 0
.../PlotterParameterEditor.spec.jsx | 0
.../src}/components/plotterparameter/index.js | 0
.../components/toolchain/GraphicalEditor.css | 0
.../components/toolchain/GraphicalEditor.jsx | 0
.../toolchain/GraphicalEditorHelpModal.jsx | 0
.../toolchain/InsertObjectModal.jsx | 0
.../components/toolchain/RenameGroupModal.jsx | 0
.../components/toolchain/ToolchainBlock.jsx | 0
.../toolchain/ToolchainConnection.jsx | 0
.../toolchain/ToolchainConnection.spec.jsx | 0
.../components/toolchain/ToolchainEditor.css | 0
.../components/toolchain/ToolchainEditor.jsx | 0
.../toolchain/ToolchainEditor.spec.jsx | 0
.../components/toolchain/ToolchainModal.jsx | 0
{src => js/src}/components/toolchain/index.js | 0
{src => js/src}/components/toolchain/types.js | 0
{src => js/src}/helpers/api.js | 0
{src => js/src}/helpers/beat.js | 0
{src => js/src}/helpers/index.js | 0
{src => js/src}/helpers/schema/algorithm.json | 0
{src => js/src}/helpers/schema/common.json | 0
{src => js/src}/helpers/schema/database.json | 0
.../src}/helpers/schema/dataformat.json | 0
{src => js/src}/helpers/schema/execution.json | 0
.../src}/helpers/schema/experiment.json | 0
{src => js/src}/helpers/schema/index.js | 0
{src => js/src}/helpers/schema/library.json | 0
{src => js/src}/helpers/schema/plotter.json | 0
.../src}/helpers/schema/plotterparameter.json | 0
{src => js/src}/helpers/schema/toolchain.json | 0
{src => js/src}/helpers/search.worker.js | 0
{src => js/src}/store/actionTypes.js | 0
{src => js/src}/store/actions.js | 0
{src => js/src}/store/index.js | 0
{src => js/src}/store/reducers.js | 0
{src => js/src}/store/selectors.js | 0
{test => js/test}/index.js | 0
{test => js/test}/test_algs.json | 0
{test => js/test}/test_dbs.json | 0
{test => js/test}/test_dfs.json | 0
{test => js/test}/test_exps.json | 0
{test => js/test}/test_libs.json | 0
{test => js/test}/test_tcs.json | 0
webpack.config.js => js/webpack.config.js | 0
requirements.txt | 6 +
setup.py | 68 +++++
version.txt | 1 +
125 files changed, 805 insertions(+), 14 deletions(-)
create mode 100644 .gitlab-ci.yml
create mode 100644 MANIFEST.in
create mode 100644 README.rst
create mode 100644 beat/__init__.py
rename src/components/plotter/PlotterEditor.spec.jsx => beat/editor/__init__.py (100%)
rename src/components/plotterparameter/PlotterParameterEditor.spec.jsx => beat/editor/scripts/__init__.py (100%)
rename server.py => beat/editor/scripts/server.py (97%)
rename templates.py => beat/editor/templates.py (100%)
rename {templates => beat/editor/templates}/algorithm.jinja2 (100%)
rename {templates => beat/editor/templates}/database.jinja2 (100%)
rename {templates => beat/editor/templates}/library.jinja2 (100%)
create mode 100644 buildout.cfg
create mode 100644 conda/meta.yaml
rename DEV.md => doc/DEV.md (100%)
rename README.md => doc/README.md (100%)
create mode 100644 doc/api.rst
create mode 100644 doc/conf.py
create mode 100644 doc/img/favicon.ico
create mode 100644 doc/img/logo.png
create mode 100644 doc/index.rst
rename licenses.md => doc/licenses.md (100%)
create mode 100644 doc/nitpick-exceptions.txt
rename .babelrc => js/.babelrc (100%)
rename .eslintrc.js => js/.eslintrc.js (100%)
rename .flowconfig => js/.flowconfig (100%)
rename .nvmrc => js/.nvmrc (100%)
rename .postcssrc => js/.postcssrc (100%)
rename .stylelintrc => js/.stylelintrc (100%)
rename .tern-project => js/.tern-project (100%)
rename index.html => js/index.html (100%)
rename karma.conf.js => js/karma.conf.js (100%)
rename main.css => js/main.css (100%)
rename main.jsx => js/main.jsx (100%)
rename package-lock.json => js/package-lock.json (100%)
rename package.json => js/package.json (100%)
rename {src => js/src}/components/App.jsx (100%)
rename {src => js/src}/components/CacheInput.jsx (100%)
rename {src => js/src}/components/CacheInput.spec.jsx (100%)
rename {src => js/src}/components/DeleteInputBtn.jsx (100%)
rename {src => js/src}/components/DeleteInputBtn.spec.jsx (100%)
rename {src => js/src}/components/EntityDetail.jsx (100%)
rename {src => js/src}/components/EntityHome.jsx (100%)
rename {src => js/src}/components/EntityList.jsx (100%)
rename {src => js/src}/components/EntityTemplateGenerationButton.jsx (100%)
rename {src => js/src}/components/HomeContent.jsx (100%)
rename {src => js/src}/components/InfoTooltip.jsx (100%)
rename {src => js/src}/components/MainContent.jsx (100%)
rename {src => js/src}/components/MainNav.jsx (100%)
rename {src => js/src}/components/NewEntityModal.jsx (100%)
rename {src => js/src}/components/ParameterConsume.jsx (100%)
rename {src => js/src}/components/ParameterCreate.jsx (100%)
rename {src => js/src}/components/SearchBar.jsx (100%)
rename {src => js/src}/components/Settings.jsx (100%)
rename {src => js/src}/components/TypedField.jsx (100%)
rename {src => js/src}/components/ValidSchemaBadge.jsx (100%)
rename {src => js/src}/components/ValidSchemaBadge.spec.jsx (100%)
rename {src => js/src}/components/algorithm/AlgorithmEditor.jsx (100%)
rename {src => js/src}/components/algorithm/AlgorithmEditor.spec.jsx (100%)
rename {src => js/src}/components/algorithm/index.js (100%)
rename {src => js/src}/components/database/DatabaseEditor.css (100%)
rename {src => js/src}/components/database/DatabaseEditor.jsx (100%)
rename {src => js/src}/components/database/DatabaseEditor.spec.jsx (100%)
rename {src => js/src}/components/database/index.js (100%)
rename {src => js/src}/components/dataformat/DataformatEditor.jsx (100%)
rename {src => js/src}/components/dataformat/DataformatEditor.spec.jsx (100%)
rename {src => js/src}/components/dataformat/index.js (100%)
rename {src => js/src}/components/experiment/ExperimentEditor.css (100%)
rename {src => js/src}/components/experiment/ExperimentEditor.jsx (100%)
rename {src => js/src}/components/experiment/ExperimentEditor.spec.jsx (100%)
rename {src => js/src}/components/experiment/index.js (100%)
rename {src => js/src}/components/library/LibraryEditor.jsx (100%)
rename {src => js/src}/components/library/LibraryEditor.spec.jsx (100%)
rename {src => js/src}/components/library/index.js (100%)
rename {src => js/src}/components/plotter/PlotterEditor.jsx (100%)
create mode 100644 js/src/components/plotter/PlotterEditor.spec.jsx
rename {src => js/src}/components/plotter/index.js (100%)
rename {src => js/src}/components/plotterparameter/PlotterParameterEditor.jsx (100%)
create mode 100644 js/src/components/plotterparameter/PlotterParameterEditor.spec.jsx
rename {src => js/src}/components/plotterparameter/index.js (100%)
rename {src => js/src}/components/toolchain/GraphicalEditor.css (100%)
rename {src => js/src}/components/toolchain/GraphicalEditor.jsx (100%)
rename {src => js/src}/components/toolchain/GraphicalEditorHelpModal.jsx (100%)
rename {src => js/src}/components/toolchain/InsertObjectModal.jsx (100%)
rename {src => js/src}/components/toolchain/RenameGroupModal.jsx (100%)
rename {src => js/src}/components/toolchain/ToolchainBlock.jsx (100%)
rename {src => js/src}/components/toolchain/ToolchainConnection.jsx (100%)
rename {src => js/src}/components/toolchain/ToolchainConnection.spec.jsx (100%)
rename {src => js/src}/components/toolchain/ToolchainEditor.css (100%)
rename {src => js/src}/components/toolchain/ToolchainEditor.jsx (100%)
rename {src => js/src}/components/toolchain/ToolchainEditor.spec.jsx (100%)
rename {src => js/src}/components/toolchain/ToolchainModal.jsx (100%)
rename {src => js/src}/components/toolchain/index.js (100%)
rename {src => js/src}/components/toolchain/types.js (100%)
rename {src => js/src}/helpers/api.js (100%)
rename {src => js/src}/helpers/beat.js (100%)
rename {src => js/src}/helpers/index.js (100%)
rename {src => js/src}/helpers/schema/algorithm.json (100%)
rename {src => js/src}/helpers/schema/common.json (100%)
rename {src => js/src}/helpers/schema/database.json (100%)
rename {src => js/src}/helpers/schema/dataformat.json (100%)
rename {src => js/src}/helpers/schema/execution.json (100%)
rename {src => js/src}/helpers/schema/experiment.json (100%)
rename {src => js/src}/helpers/schema/index.js (100%)
rename {src => js/src}/helpers/schema/library.json (100%)
rename {src => js/src}/helpers/schema/plotter.json (100%)
rename {src => js/src}/helpers/schema/plotterparameter.json (100%)
rename {src => js/src}/helpers/schema/toolchain.json (100%)
rename {src => js/src}/helpers/search.worker.js (100%)
rename {src => js/src}/store/actionTypes.js (100%)
rename {src => js/src}/store/actions.js (100%)
rename {src => js/src}/store/index.js (100%)
rename {src => js/src}/store/reducers.js (100%)
rename {src => js/src}/store/selectors.js (100%)
rename {test => js/test}/index.js (100%)
rename {test => js/test}/test_algs.json (100%)
rename {test => js/test}/test_dbs.json (100%)
rename {test => js/test}/test_dfs.json (100%)
rename {test => js/test}/test_exps.json (100%)
rename {test => js/test}/test_libs.json (100%)
rename {test => js/test}/test_tcs.json (100%)
rename webpack.config.js => js/webpack.config.js (100%)
create mode 100644 requirements.txt
create mode 100644 setup.py
create mode 100644 version.txt
diff --git a/.gitignore b/.gitignore
index 52570f50..3dc68b56 100644
--- a/.gitignore
+++ b/.gitignore
@@ -78,3 +78,34 @@ user_conf.json
# pycache
__pycache__
+
+*~
+*.swp
+*.pyc
+*.so
+bin
+eggs
+parts
+.installed.cfg
+.mr.developer.cfg
+*.egg-info
+develop-eggs
+sphinx
+doc/api
+src
+dist
+.nfs*
+.gdb_history
+build
+*.egg
+opsnr.stt
+.coverage
+.DS_Store
+html/
+record.txt
+_ci/
+miniconda.sh
+miniconda/
+miniconda.cached/
+conda/recipe_append.yaml
+conda-bld/
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
new file mode 100644
index 00000000..3d9a7e77
--- /dev/null
+++ b/.gitlab-ci.yml
@@ -0,0 +1,182 @@
+# This build file uses template features from YAML so it is generic enough for
+# any Bob project. Don't modify it unless you know what you're doing.
+
+# Definition of global variables (all stages)
+variables:
+ CONDA_ROOT: "${CI_PROJECT_DIR}/miniconda"
+
+
+# Definition of our build pipeline order
+stages:
+ - build
+ - docker
+ - deploy
+ - pypi
+
+
+# Build targets
+.build_template: &build_job
+ stage: build
+ before_script:
+ - mkdir _ci
+ - curl --silent "https://gitlab.idiap.ch/bob/bob.admin/raw/master/gitlab/install.sh" > _ci/install.sh
+ - chmod 755 _ci/install.sh
+ - ./_ci/install.sh _ci master #installs ci support scripts
+ - ./_ci/before_build.sh
+ script:
+ - ./_ci/build.sh
+ after_script:
+ - ./_ci/after_build.sh
+ cache: &build_caches
+ paths:
+ - miniconda.sh
+ - ${CONDA_ROOT}/pkgs/*.tar.bz2
+ - ${CONDA_ROOT}/pkgs/urls.txt
+
+
+.build_linux_template: &linux_build_job
+ <<: *build_job
+ tags:
+ - docker
+ image: continuumio/conda-concourse-ci
+ artifacts:
+ expire_in: 1 week
+ paths:
+ - _ci/
+ - ${CONDA_ROOT}/conda-bld/linux-64/*.tar.bz2
+ cache:
+ <<: *build_caches
+ key: "linux-cache"
+
+
+.build_macosx_template: &macosx_build_job
+ <<: *build_job
+ tags:
+ - macosx
+ artifacts:
+ expire_in: 1 week
+ paths:
+ - _ci/
+ - ${CONDA_ROOT}/conda-bld/osx-64/*.tar.bz2
+ cache:
+ <<: *build_caches
+ key: "macosx-cache"
+
+
+# Docker host based testing (must be run inside dind or docker-enabled host)
+.docker_test_linux_template: &linux_docker_job
+ stage: docker
+ before_script:
+ # safe keep artifacts as before_build.sh will erase those...
+ - mv ${CONDA_ROOT}/conda-bld .
+ - ./_ci/install.sh _ci master #updates ci support scripts
+ - ./_ci/before_build.sh
+ - mv conda-bld ${CONDA_ROOT}
+ - ./scripts/before_test.sh
+ script:
+ - export BEAT_DOCKER_TESTS=true
+ - BOB_TEST_ONLY=true ./_ci/build.sh
+ after_script:
+ - ./_ci/after_build.sh
+
+
+build_linux_27:
+ <<: *linux_build_job
+ variables:
+ PYTHON_VERSION: "2.7"
+
+
+build_linux_36:
+ <<: *linux_build_job
+ variables:
+ PYTHON_VERSION: "3.6"
+ BUILD_EGG: "true"
+ artifacts:
+ expire_in: 1 week
+ paths:
+ - _ci/
+ - dist/*.zip
+ - sphinx
+ - ${CONDA_ROOT}/conda-bld/linux-64/*.tar.bz2
+
+
+build_macosx_27:
+ <<: *macosx_build_job
+ variables:
+ PYTHON_VERSION: "2.7"
+
+
+build_macosx_36:
+ <<: *macosx_build_job
+ variables:
+ PYTHON_VERSION: "3.6"
+
+
+# Docker host based testing
+docker_linux_27:
+ <<: *linux_docker_job
+ variables:
+ PYTHON_VERSION: "2.7"
+ dependencies:
+ - build_linux_27
+ tags:
+ - docker-build
+
+
+docker_linux_36:
+ <<: *linux_docker_job
+ variables:
+ PYTHON_VERSION: "3.6"
+ dependencies:
+ - build_linux_36
+ tags:
+ - docker-build
+
+
+# Deploy targets
+.deploy_template: &deploy_job
+ stage: deploy
+ before_script:
+ - ./_ci/install.sh _ci master #updates ci support scripts
+ script:
+ - ./_ci/deploy.sh
+ dependencies:
+ - build_linux_27
+ - build_linux_36
+ - build_macosx_27
+ - build_macosx_36
+ tags:
+ - deployer
+
+
+deploy_beta:
+ <<: *deploy_job
+ environment: beta
+ only:
+ - master
+
+
+deploy_stable:
+ <<: *deploy_job
+ environment: stable
+ only:
+ - /^v\d+\.\d+\.\d+([abc]\d*)?$/ # PEP-440 compliant version (tags)
+ except:
+ - branches
+
+
+pypi:
+ stage: pypi
+ environment: pypi
+ only:
+ - /^v\d+\.\d+\.\d+([abc]\d*)?$/ # PEP-440 compliant version (tags)
+ except:
+ - branches
+ before_script:
+ - ./_ci/install.sh _ci master #updates ci support scripts
+ script:
+ - ./_ci/pypi.sh
+ dependencies:
+ - build_linux_36
+ tags:
+ - deployer
diff --git a/MANIFEST.in b/MANIFEST.in
new file mode 100644
index 00000000..3fc2f289
--- /dev/null
+++ b/MANIFEST.in
@@ -0,0 +1,5 @@
+include LICENSE.AGPL README.rst version.txt requirements.txt buildout.cfg
+recursive-include scripts *.sh
+recursive-include doc conf.py *.rst *.png *.ico
+recursive-include beat/editor/templates *.jinja2
+recursive-include beat/editor/js *
diff --git a/README.rst b/README.rst
new file mode 100644
index 00000000..a0cced31
--- /dev/null
+++ b/README.rst
@@ -0,0 +1,65 @@
+.. vim: set fileencoding=utf-8 :
+
+.. Copyright (c) 2016 Idiap Research Institute, http://www.idiap.ch/ ..
+.. Contact: beat.support@idiap.ch ..
+.. ..
+.. This file is part of the beat.editor module of the BEAT platform. ..
+.. ..
+.. Commercial License Usage ..
+.. Licensees holding valid commercial BEAT licenses may use this file in ..
+.. accordance with the terms contained in a written agreement between you ..
+.. and Idiap. For further information contact tto@idiap.ch ..
+.. ..
+.. Alternatively, this file may be used under the terms of the GNU Affero ..
+.. Public License version 3 as published by the Free Software and appearing ..
+.. in the file LICENSE.AGPL included in the packaging of this file. ..
+.. The BEAT platform is distributed in the hope that it will be useful, but ..
+.. WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY ..
+.. or FITNESS FOR A PARTICULAR PURPOSE. ..
+.. ..
+.. You should have received a copy of the GNU Affero Public License along ..
+.. with the BEAT platform. If not, see http://www.gnu.org/licenses/. ..
+
+.. image:: https://img.shields.io/badge/docs-stable-yellow.svg
+ :target: https://www.idiap.ch/software/beat/docs/beat/beat.editor/stable/index.html
+.. image:: https://img.shields.io/badge/docs-latest-orange.svg
+ :target: https://www.idiap.ch/software/beat/docs/beat/beat.editor/master/index.html
+.. image:: https://gitlab.idiap.ch/beat/beat.editor/badges/master/build.svg
+ :target: https://gitlab.idiap.ch/beat/beat.editor/commits/master
+.. image:: https://gitlab.idiap.ch/beat/beat.editor/badges/master/coverage.svg
+ :target: https://gitlab.idiap.ch/beat/beat.editor/commits/master
+.. image:: https://img.shields.io/badge/gitlab-project-0000c0.svg
+ :target: https://gitlab.idiap.ch/beat/beat.editor
+.. image:: https://img.shields.io/pypi/v/beat.editor.svg
+ :target: https://pypi.python.org/pypi/beat.editor
+
+
+===============================
+ Local editor for BEAT objects
+===============================
+
+This package part of BEAT_, an open-source evaluation platform for data science
+algorithms and workflows. It contains the source code for a local editor for
+BEAT objects.
+
+
+Installation
+------------
+
+Complete BEAT's `installation`_ instructions. Then, to install this package,
+run::
+
+ $ conda install beat.editor
+
+
+Contact
+-------
+
+For questions or reporting issues to this software package, contact our
+development `mailing list`_.
+
+
+.. Place your references here:
+.. _beat: https://www.idiap.ch/software/beat
+.. _installation: https://www.idiap.ch/software/beat/install
+.. _mailing list: https://www.idiap.ch/software/beat/discuss
diff --git a/beat/__init__.py b/beat/__init__.py
new file mode 100644
index 00000000..71f2674e
--- /dev/null
+++ b/beat/__init__.py
@@ -0,0 +1,30 @@
+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+
+###############################################################################
+# #
+# Copyright (c) 2016 Idiap Research Institute, http://www.idiap.ch/ #
+# Contact: beat.support@idiap.ch #
+# #
+# This file is part of the beat.editor module of the BEAT platform. #
+# #
+# Commercial License Usage #
+# Licensees holding valid commercial BEAT licenses may use this file in #
+# accordance with the terms contained in a written agreement between you #
+# and Idiap. For further information contact tto@idiap.ch #
+# #
+# Alternatively, this file may be used under the terms of the GNU Affero #
+# Public License version 3 as published by the Free Software and appearing #
+# in the file LICENSE.AGPL included in the packaging of this file. #
+# The BEAT platform is distributed in the hope that it will be useful, but #
+# WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY #
+# or FITNESS FOR A PARTICULAR PURPOSE. #
+# #
+# You should have received a copy of the GNU Affero Public License along #
+# with the BEAT platform. If not, see http://www.gnu.org/licenses/. #
+# #
+###############################################################################
+
+# see https://docs.python.org/3/library/pkgutil.html
+from pkgutil import extend_path
+__path__ = extend_path(__path__, __name__)
diff --git a/src/components/plotter/PlotterEditor.spec.jsx b/beat/editor/__init__.py
similarity index 100%
rename from src/components/plotter/PlotterEditor.spec.jsx
rename to beat/editor/__init__.py
diff --git a/src/components/plotterparameter/PlotterParameterEditor.spec.jsx b/beat/editor/scripts/__init__.py
similarity index 100%
rename from src/components/plotterparameter/PlotterParameterEditor.spec.jsx
rename to beat/editor/scripts/__init__.py
diff --git a/server.py b/beat/editor/scripts/server.py
similarity index 97%
rename from server.py
rename to beat/editor/scripts/server.py
index e79cf915..03aa816b 100644
--- a/server.py
+++ b/beat/editor/scripts/server.py
@@ -16,11 +16,8 @@ import simplejson
from flask import Flask, request
from flask_restful import Resource, Api
from flask_cors import CORS
-import templates
-app = Flask(__name__)
-api = Api(app)
-CORS(app)
+from .. import templates
def get_user_conf():
"""Reads & returns the user configuration in a dict"""
@@ -444,14 +441,19 @@ def gen_beat_endpoint(entity):
return BeatEndpoint
-api.add_resource(Home, '/')
-api.add_resource(Settings, '/settings')
-api.add_resource(Layout, '/layout')
-api.add_resource(Templates, '/templates')
-api.add_resource(Environments, '/environments')
-for entity in BeatEntity:
- val = entity.value
- api.add_resource(gen_beat_endpoint(entity), '/' + val)
+def main():
-if __name__ == '__main__':
- app.run(debug=True)
+ app = Flask(__name__)
+ api = Api(app)
+ CORS(app)
+
+ api.add_resource(Home, '/')
+ api.add_resource(Settings, '/settings')
+ api.add_resource(Layout, '/layout')
+ api.add_resource(Templates, '/templates')
+ api.add_resource(Environments, '/environments')
+ for entity in BeatEntity:
+ val = entity.value
+ api.add_resource(gen_beat_endpoint(entity), '/' + val)
+
+ app.run(debug=True)
diff --git a/templates.py b/beat/editor/templates.py
similarity index 100%
rename from templates.py
rename to beat/editor/templates.py
diff --git a/templates/algorithm.jinja2 b/beat/editor/templates/algorithm.jinja2
similarity index 100%
rename from templates/algorithm.jinja2
rename to beat/editor/templates/algorithm.jinja2
diff --git a/templates/database.jinja2 b/beat/editor/templates/database.jinja2
similarity index 100%
rename from templates/database.jinja2
rename to beat/editor/templates/database.jinja2
diff --git a/templates/library.jinja2 b/beat/editor/templates/library.jinja2
similarity index 100%
rename from templates/library.jinja2
rename to beat/editor/templates/library.jinja2
diff --git a/buildout.cfg b/buildout.cfg
new file mode 100644
index 00000000..5dd40ea1
--- /dev/null
+++ b/buildout.cfg
@@ -0,0 +1,8 @@
+[buildout]
+parts = scripts
+eggs = beat.editor
+develop = .
+newest = false
+
+[scripts]
+recipe = bob.buildout:scripts
diff --git a/conda/meta.yaml b/conda/meta.yaml
new file mode 100644
index 00000000..3a97fb5e
--- /dev/null
+++ b/conda/meta.yaml
@@ -0,0 +1,65 @@
+{% set name = 'beat.editor' %}
+{% set project_dir = environ.get('RECIPE_DIR') + '/..' %}
+
+package:
+ name: {{ name }}
+ version: {{ environ.get('BOB_PACKAGE_VERSION', '0.0.1') }}
+
+build:
+ entry_points:
+ - beatedit = beat.editor.scripts.server:main
+ number: {{ environ.get('BOB_BUILD_NUMBER', 0) }}
+ run_exports:
+ - {{ pin_subpackage(name) }}
+ script:
+ - cd {{ project_dir }}
+ {% if environ.get('BUILD_EGG') %}
+ - python setup.py sdist --formats=zip
+ {% endif %}
+ - python setup.py install --single-version-externally-managed --record record.txt
+
+requirements:
+ host:
+ - python {{ python }}
+ - setuptools {{ setuptools }}
+ - nodejs {{ nodejs }}
+ run:
+ - python
+ - setuptools
+ - simplejson
+ - jinja2
+ - flask
+ - flask-cors
+ - flask-restful
+ - enum34 # [py<34]
+
+test:
+ source_files:
+ - js
+
+ requires:
+ - bob-devel {{ bob_devel }}.*
+ - beat-devel {{ beat_devel }}.*
+ - bob.extension
+ - nose
+ - coverage
+ - sphinx
+ - sphinx_rtd_theme
+ - nodejs
+
+ imports:
+ - {{ name }}
+
+ commands:
+ - beatedit --help
+ - nosetests --with-coverage --cover-package={{ name }} -sv {{ name }}
+ - sphinx-build -aEW {{ project_dir }}/doc {{ project_dir }}/sphinx
+ - sphinx-build -aEb doctest {{ project_dir }}/doc sphinx
+ - conda inspect linkages -p $PREFIX {{ name }} # [not win]
+ - conda inspect objects -p $PREFIX {{ name }} # [osx]
+
+about:
+ home: https://www.idiap.ch/software/beat/
+ license: AGPLv3
+ summary: Local editor for BEAT objects
+ license_family: AGPL
diff --git a/DEV.md b/doc/DEV.md
similarity index 100%
rename from DEV.md
rename to doc/DEV.md
diff --git a/README.md b/doc/README.md
similarity index 100%
rename from README.md
rename to doc/README.md
diff --git a/doc/api.rst b/doc/api.rst
new file mode 100644
index 00000000..a5028650
--- /dev/null
+++ b/doc/api.rst
@@ -0,0 +1,10 @@
+
+=====
+ API
+=====
+
+This section includes information for using the Python API of
+``beat.editor``.
+
+.. automodule:: beat.editor
+
diff --git a/doc/conf.py b/doc/conf.py
new file mode 100644
index 00000000..b2edea37
--- /dev/null
+++ b/doc/conf.py
@@ -0,0 +1,265 @@
+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+
+import os
+import sys
+import glob
+import pkg_resources
+
+
+# -- General configuration -----------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+needs_sphinx = '1.3'
+
+# Add any Sphinx extension module names here, as strings. They can be extensions
+# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = [
+ 'sphinx.ext.todo',
+ 'sphinx.ext.coverage',
+ 'sphinx.ext.ifconfig',
+ 'sphinx.ext.autodoc',
+ 'sphinx.ext.autosummary',
+ 'sphinx.ext.doctest',
+ 'sphinx.ext.graphviz',
+ 'sphinx.ext.intersphinx',
+ 'sphinx.ext.napoleon',
+ 'sphinx.ext.viewcode',
+ 'sphinx.ext.mathjax',
+ #'matplotlib.sphinxext.plot_directive'
+ ]
+
+# Be picky about warnings
+nitpicky = True
+
+# Ignores stuff we can't easily resolve on other project's sphinx manuals
+nitpick_ignore = []
+
+# Allows the user to override warnings from a separate file
+if os.path.exists('nitpick-exceptions.txt'):
+ for line in open('nitpick-exceptions.txt'):
+ if line.strip() == "" or line.startswith("#"):
+ continue
+ dtype, target = line.split(None, 1)
+ target = target.strip()
+ try: # python 2.x
+ target = unicode(target)
+ except NameError:
+ pass
+ nitpick_ignore.append((dtype, target))
+
+# Always includes todos
+todo_include_todos = True
+
+# Generates auto-summary automatically
+autosummary_generate = True
+
+# Create numbers on figures with captions
+numfig = True
+
+# If we are on OSX, the 'dvipng' path maybe different
+dvipng_osx = '/opt/local/libexec/texlive/binaries/dvipng'
+if os.path.exists(dvipng_osx): pngmath_dvipng = dvipng_osx
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix of source filenames.
+source_suffix = '.rst'
+
+# The encoding of source files.
+#source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'beat.backend.python'
+import time
+copyright = u'%s, Idiap Research Institute' % time.strftime('%Y')
+
+# Grab the setup entry
+distribution = pkg_resources.require(project)[0]
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = distribution.version
+# The full version, including alpha/beta/rc tags.
+release = distribution.version
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+#today = ''
+# Else, today_fmt is used as the format for a strftime call.
+#today_fmt = '%B %d, %Y'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ['links.rst']
+
+# The reST default role (used for this markup: `text`) to use for all documents.
+#default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+#add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+#add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+#show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# A list of ignored prefixes for module index sorting.
+#modindex_common_prefix = []
+
+# Some variables which are useful for generated material
+project_variable = project.replace('.', '_')
+short_description = u'Biometrics Evaluation and Testing Platform (Python backend)'
+owner = [u'Idiap Research Institute']
+
+
+# -- Options for HTML output ---------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages. See the documentation for
+# a list of builtin themes.
+import sphinx_rtd_theme
+html_theme = 'sphinx_rtd_theme'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further. For a list of options available for each theme, see the
+# documentation.
+#html_theme_options = {}
+
+# Add any paths that contain custom themes here, relative to this directory.
+html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
+
+# The name for this set of Sphinx documents. If None, it defaults to
+# "<project> v<release> documentation".
+#html_title = None
+
+# A shorter title for the navigation bar. Default is the same as html_title.
+#html_short_title = project_variable
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+html_logo = 'img/logo.png'
+
+# The name of an image file (within the static path) to use as favicon of the
+# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+html_favicon = 'img/favicon.ico'
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+#html_static_path = ['_static']
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
+# using the given strftime format.
+#html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+#html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+#html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+#html_additional_pages = {}
+
+# If false, no module index is generated.
+#html_domain_indices = True
+
+# If false, no index is generated.
+#html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+#html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+#html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
+#html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
+#html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it. The value of this option must be the
+# base URL from which the finished HTML is served.
+#html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+#html_file_suffix = None
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = project_variable + u'_doc'
+
+
+# -- Post configuration --------------------------------------------------------
+
+# Included after all input documents
+rst_epilog = """
+.. |project| replace:: BEAT
+.. |version| replace:: %s
+.. |current-year| date:: %%Y
+""" % (version,)
+
+# Default processing flags for sphinx
+autoclass_content = 'class'
+autodoc_member_order = 'bysource'
+autodoc_default_flags = [
+ 'members',
+ 'undoc-members',
+ 'show-inheritance',
+ ]
+
+# For inter-documentation mapping:
+from bob.extension.utils import link_documentation, load_requirements
+sphinx_requirements = "extra-intersphinx.txt"
+if os.path.exists(sphinx_requirements):
+ intersphinx_mapping = link_documentation(
+ additional_packages=['python','numpy'] + \
+ load_requirements(sphinx_requirements)
+ )
+else:
+ intersphinx_mapping = link_documentation()
+
+# Adds simplejson, pyzmq links
+intersphinx_mapping['http://simplejson.readthedocs.io/en/stable/'] = None
+intersphinx_mapping['http://pyzmq.readthedocs.io/en/stable/'] = None
+
+# We want to remove all private (i.e. _. or __.__) members
+# that are not in the list of accepted functions
+accepted_private_functions = ['__array__']
+
+def member_function_test(app, what, name, obj, skip, options):
+ # test if we have a private function
+ if len(name) > 1 and name[0] == '_':
+ # test if this private function should be allowed
+ if name not in accepted_private_functions:
+ # omit privat functions that are not in the list of accepted private functions
+ return skip
+ else:
+ # test if the method is documented
+ if not hasattr(obj, '__doc__') or not obj.__doc__:
+ return skip
+ return False
+
+def setup(app):
+ app.connect('autodoc-skip-member', member_function_test)
diff --git a/doc/img/favicon.ico b/doc/img/favicon.ico
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diff --git a/doc/index.rst b/doc/index.rst
new file mode 100644
index 00000000..8688cbc8
--- /dev/null
+++ b/doc/index.rst
@@ -0,0 +1,43 @@
+.. vim: set fileencoding=utf-8 :
+
+.. Copyright (c) 2016 Idiap Research Institute, http://www.idiap.ch/ ..
+.. Contact: beat.support@idiap.ch ..
+.. ..
+.. This file is part of the beat.editor module of the BEAT platform. ..
+.. ..
+.. Commercial License Usage ..
+.. Licensees holding valid commercial BEAT licenses may use this file in ..
+.. accordance with the terms contained in a written agreement between you ..
+.. and Idiap. For further information contact tto@idiap.ch ..
+.. ..
+.. Alternatively, this file may be used under the terms of the GNU Affero ..
+.. Public License version 3 as published by the Free Software and appearing ..
+.. in the file LICENSE.AGPL included in the packaging of this file. ..
+.. The BEAT platform is distributed in the hope that it will be useful, but ..
+.. WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY ..
+.. or FITNESS FOR A PARTICULAR PURPOSE. ..
+.. ..
+.. You should have received a copy of the GNU Affero Public License along ..
+.. with the BEAT platform. If not, see http://www.gnu.org/licenses/. ..
+
+
+===============================
+ Local editor for BEAT objects
+===============================
+
+.. todo::
+
+ Write user guide
+
+
+.. toctree::
+
+ api
+
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
diff --git a/licenses.md b/doc/licenses.md
similarity index 100%
rename from licenses.md
rename to doc/licenses.md
diff --git a/doc/nitpick-exceptions.txt b/doc/nitpick-exceptions.txt
new file mode 100644
index 00000000..2f250370
--- /dev/null
+++ b/doc/nitpick-exceptions.txt
@@ -0,0 +1,10 @@
+# Not available in Python 2.7, but ok in Python 3.x
+py:exc TypeError
+py:exc RuntimeError
+py:exc ValueError
+py:exc KeyError
+py:class tuple
+py:class list
+
+# Issue on the simplejson documentation
+py:class simplejson.encoder.JSONEncoder
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diff --git a/src/components/library/LibraryEditor.jsx b/js/src/components/library/LibraryEditor.jsx
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diff --git a/src/components/toolchain/GraphicalEditor.css b/js/src/components/toolchain/GraphicalEditor.css
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diff --git a/src/components/toolchain/InsertObjectModal.jsx b/js/src/components/toolchain/InsertObjectModal.jsx
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diff --git a/src/components/toolchain/RenameGroupModal.jsx b/js/src/components/toolchain/RenameGroupModal.jsx
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diff --git a/src/components/toolchain/ToolchainBlock.jsx b/js/src/components/toolchain/ToolchainBlock.jsx
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diff --git a/src/components/toolchain/ToolchainConnection.jsx b/js/src/components/toolchain/ToolchainConnection.jsx
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diff --git a/src/components/toolchain/types.js b/js/src/components/toolchain/types.js
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diff --git a/src/helpers/api.js b/js/src/helpers/api.js
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diff --git a/src/helpers/beat.js b/js/src/helpers/beat.js
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diff --git a/src/helpers/schema/execution.json b/js/src/helpers/schema/execution.json
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diff --git a/src/helpers/schema/library.json b/js/src/helpers/schema/library.json
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diff --git a/src/helpers/search.worker.js b/js/src/helpers/search.worker.js
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diff --git a/src/store/actionTypes.js b/js/src/store/actionTypes.js
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diff --git a/test/index.js b/js/test/index.js
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diff --git a/test/test_dbs.json b/js/test/test_dbs.json
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diff --git a/test/test_exps.json b/js/test/test_exps.json
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diff --git a/test/test_libs.json b/js/test/test_libs.json
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diff --git a/test/test_tcs.json b/js/test/test_tcs.json
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diff --git a/webpack.config.js b/js/webpack.config.js
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diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 00000000..b705bb93
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,6 @@
+setuptools
+simplejson
+jinja2
+flask
+flask-cors
+flask-restful
diff --git a/setup.py b/setup.py
new file mode 100644
index 00000000..9eb52f76
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,68 @@
+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+
+###############################################################################
+# #
+# Copyright (c) 2016 Idiap Research Institute, http://www.idiap.ch/ #
+# Contact: beat.support@idiap.ch #
+# #
+# This file is part of the beat.editor module of the BEAT platform. #
+# #
+# Commercial License Usage #
+# Licensees holding valid commercial BEAT licenses may use this file in #
+# accordance with the terms contained in a written agreement between you #
+# and Idiap. For further information contact tto@idiap.ch #
+# #
+# Alternatively, this file may be used under the terms of the GNU Affero #
+# Public License version 3 as published by the Free Software and appearing #
+# in the file LICENSE.AGPL included in the packaging of this file. #
+# The BEAT platform is distributed in the hope that it will be useful, but #
+# WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY #
+# or FITNESS FOR A PARTICULAR PURPOSE. #
+# #
+# You should have received a copy of the GNU Affero Public License along #
+# with the BEAT platform. If not, see http://www.gnu.org/licenses/. #
+# #
+###############################################################################
+
+
+from setuptools import setup, find_packages
+
+def load_requirements(f):
+ retval = [str(k.strip()) for k in open(f, 'rt')]
+ return [k for k in retval if k and k[0] not in ('#', '-')]
+
+# The only thing we do in this file is to call the setup() function with all
+# parameters that define our package.
+setup(
+
+ name='beat.editor',
+ version=open("version.txt").read().rstrip(),
+ description='Local editor for BEAT objects',
+ url='https://gitlab.idiap.ch/beat/beat.editor',
+ license='AGPLv3',
+ author='Idiap Research Institute',
+ author_email='beat.support@idiap.ch',
+ long_description=open('README.rst').read(),
+
+ packages=find_packages(),
+ include_package_data=True,
+ zip_safe=False,
+ install_requires=load_requirements('requirements.txt'),
+ entry_points={
+ 'console_scripts': [
+ 'beatedit = beat.editor.scripts.server:main',
+ ],
+ },
+
+ classifiers = [
+ 'Framework :: BEAT',
+ 'Development Status :: 5 - Production/Stable',
+ 'Intended Audience :: Developers',
+ 'License :: OSI Approved :: GNU Affero General Public License v3',
+ 'Natural Language :: English',
+ 'Programming Language :: Python',
+ 'Programming Language :: Python :: 3',
+ 'Topic :: Software Development :: Libraries :: Python Modules',
+ ],
+)
diff --git a/version.txt b/version.txt
new file mode 100644
index 00000000..cdf29915
--- /dev/null
+++ b/version.txt
@@ -0,0 +1 @@
+1.0.0b0
--
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