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beat.core
Commit f048abd7 authored by Samuel GAIST's avatar Samuel GAIST
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[execution][docker] Implement support for name based database environment selection 

This makes use of the new environment field that can be
added to the database declaration and is then used to
select the runtime environment in place of the database
search done until now.
parent e2972895
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Showing with 1581 additions and 18 deletions
beat/core/execution/docker.py
View file @ f048abd7
......@@ -48,6 +48,8 @@ import logging
import requests
import simplejson as json
from collections import namedtuple
from beat.backend.python.execution import MessageHandler
from beat.backend.python.data import getAllFilenames
......@@ -188,33 +190,79 @@ class DockerExecutor(RemoteExecutor):
# Modify the paths to the databases in the dumped configuration files
root_folder = os.path.join(databases_configuration_path, "prefix", "databases")
database_paths = {}
DatabaseInfo = namedtuple("DatabaseInfo", ["path", "environment"])
databases_infos = {}
for db_name in self.databases.keys():
for db_name, db_object, in self.databases.items():
json_path = os.path.join(root_folder, db_name + ".json")
with open(json_path, "r") as f:
db_data = json.load(f)
database_paths[db_name] = db_data["root_folder"]
db_data["root_folder"] = os.path.join("/databases", db_name)
system_path = db_data["root_folder"]
container_path = os.path.join("/databases", db_name)
db_data["root_folder"] = container_path
with open(json_path, "w") as f:
json.dump(db_data, f, indent=4)
# Determine the docker image to use for the databases
try:
databases_environment = self.host.db2docker(database_paths.keys())
except Exception:
raise RuntimeError(
"No environment found for the databases `%s' "
"- available environments are %s"
% (
", ".join(database_paths.keys()),
", ".join(self.host.db_environments.keys()),
)
databases_infos[db_name] = DatabaseInfo(
system_path, utils.build_env_name(db_object.environment)
)
databases_environment = None
requesting_environments = {
name: info
for name, info in databases_infos.items()
if info.environment is not None
}
if requesting_environments:
if len(requesting_environments) != len(self.databases):
raise RuntimeError(
"Selected databases ({}) are not all providing"
" an environment.".format(list(self.databases.keys()))
)
requested_environments = {
info.environment
for info in requesting_environments.values()
if info.environment is not None
}
if len(requested_environments) > 1:
raise RuntimeError(
"Selected databases ({}) are requesting different environments,"
"only one is supported".format(list(requesting_environments.keys()))
)
# All databases are requesting the same environment
db_environment = next(iter(requested_environments))
try:
databases_environment = self.host.dbenv2docker(db_environment)
except Exception:
raise RuntimeError(
"Environment {} not found - available environments are {}".format(
db_environment, list(self.host.db_environments.keys())
)
)
if not databases_environment:
# Determine the docker image to use for the databases
database_list = databases_infos.keys()
try:
databases_environment = self.host.db2docker(database_list)
except Exception:
raise RuntimeError(
"No environment found for the databases `%s' "
"- available environments are %s"
% (
", ".join(database_list),
", ".join(self.host.db_environments.keys()),
)
)
# Creation of the container
# Note: we only support one databases image loaded at the same time
database_port = utils.find_free_port()
......@@ -244,8 +292,8 @@ class DockerExecutor(RemoteExecutor):
)
databases_info.add_volume(self.cache, self.CONTAINER_CACHE_PATH)
for db_name, db_path in database_paths.items():
databases_info.add_volume(db_path, os.path.join("/databases", db_name))
for db_name, db_info in databases_infos.items():
databases_info.add_volume(db_info.path, os.path.join("/databases", db_name))
# Start the container
while True:
......@@ -392,7 +440,7 @@ class DockerExecutor(RemoteExecutor):
)
# Determine the docker image to use for the processing
processing_environment = "%(name)s (%(version)s)" % self.data["environment"]
processing_environment = utils.build_env_name(self.data["environment"])
if processing_environment not in self.host:
raise RuntimeError(
"Environment `%s' is not available on docker "
......
beat/core/test/prefix/databases/integers_db_invalid_env/1.json 0 → 100644
View file @ f048abd7
{
"root_folder": "/tmp/path/not/set",
"environment": {
"name": "Does not exist",
"version": "1.4.0"
},
"protocols": [
{
"name": "double",
"template": "double",
"sets": [
{
"name": "double",
"template": "double",
"view": "Double",
"outputs": {
"a": "user/single_integer/1",
"b": "user/single_integer/1",
"sum": "user/single_integer/1"
}
}
]
},
{
"name": "triple",
"template": "triple",
"sets": [
{
"name": "triple",
"view": "Triple",
"template": "triple",
"outputs": {
"a": "user/single_integer/1",
"b": "user/single_integer/1",
"c": "user/single_integer/1",
"sum": "user/single_integer/1"
}
}
]
},
{
"name": "two_sets",
"template": "two_sets",
"sets": [
{
"name": "double",
"template": "double",
"view": "Double",
"outputs": {
"a": "user/single_integer/1",
"b": "user/single_integer/1",
"sum": "user/single_integer/1"
}
},
{
"name": "triple",
"template": "triple",
"view": "Triple",
"outputs": {
"a": "user/single_integer/1",
"b": "user/single_integer/1",
"c": "user/single_integer/1",
"sum": "user/single_integer/1"
}
}
]
},
{
"name": "labelled",
"template": "labelled",
"sets": [
{
"name": "labelled",
"template": "labelled",
"view": "Labelled",
"outputs": {
"value": "user/single_integer/1",
"label": "user/single_string/1"
}
}
]
},
{
"name": "different_frequencies",
"template": "different_frequencies",
"sets": [
{
"name": "double",
"template": "double",
"view": "DifferentFrequencies",
"outputs": {
"a": "user/single_integer/1",
"b": "user/single_integer/1"
}
}
]
}
]
}
beat/core/test/prefix/databases/integers_db_invalid_env/1.py 0 → 100755
View file @ f048abd7
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
###################################################################################
# #
# Copyright (c) 2019 Idiap Research Institute, http://www.idiap.ch/ #
# Contact: beat.support@idiap.ch #
# #
# Redistribution and use in source and binary forms, with or without #
# modification, are permitted provided that the following conditions are met: #
# #
# 1. Redistributions of source code must retain the above copyright notice, this #
# list of conditions and the following disclaimer. #
# #
# 2. Redistributions in binary form must reproduce the above copyright notice, #
# this list of conditions and the following disclaimer in the documentation #
# and/or other materials provided with the distribution. #
# #
# 3. Neither the name of the copyright holder nor the names of its contributors #
# may be used to endorse or promote products derived from this software without #
# specific prior written permission. #
# #
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND #
# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED #
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE #
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE #
# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL #
# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR #
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER #
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, #
# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE #
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. #
# #
###################################################################################
import numpy
from collections import namedtuple
from beat.backend.python.database import View
class Double(View):
def index(self, root_folder, parameters):
Entry = namedtuple("Entry", ["a", "b", "sum"])
return [
Entry(1, 10, 11),
Entry(2, 20, 22),
Entry(3, 30, 33),
Entry(4, 40, 44),
Entry(5, 50, 55),
Entry(6, 60, 66),
Entry(7, 70, 77),
Entry(8, 80, 88),
Entry(9, 90, 99),
]
def get(self, output, index):
obj = self.objs[index]
if output == "a":
return {"value": numpy.int32(obj.a)}
elif output == "b":
return {"value": numpy.int32(obj.b)}
elif output == "sum":
return {"value": numpy.int32(obj.sum)}
elif output == "class":
return {"value": numpy.int32(obj.cls)}
# ----------------------------------------------------------
class Triple(View):
def index(self, root_folder, parameters):
Entry = namedtuple("Entry", ["a", "b", "c", "sum"])
return [
Entry(1, 10, 100, 111),
Entry(2, 20, 200, 222),
Entry(3, 30, 300, 333),
Entry(4, 40, 400, 444),
Entry(5, 50, 500, 555),
Entry(6, 60, 600, 666),
Entry(7, 70, 700, 777),
Entry(8, 80, 800, 888),
Entry(9, 90, 900, 999),
]
def get(self, output, index):
obj = self.objs[index]
if output == "a":
return {"value": numpy.int32(obj.a)}
elif output == "b":
return {"value": numpy.int32(obj.b)}
elif output == "c":
return {"value": numpy.int32(obj.c)}
elif output == "sum":
return {"value": numpy.int32(obj.sum)}
# ----------------------------------------------------------
class Labelled(View):
def index(self, root_folder, parameters):
Entry = namedtuple("Entry", ["label", "value"])
return [
Entry("A", 1),
Entry("A", 2),
Entry("A", 3),
Entry("A", 4),
Entry("A", 5),
Entry("B", 10),
Entry("B", 20),
Entry("B", 30),
Entry("B", 40),
Entry("B", 50),
Entry("C", 100),
Entry("C", 200),
Entry("C", 300),
Entry("C", 400),
Entry("C", 500),
]
def get(self, output, index):
obj = self.objs[index]
if output == "label":
return {"value": obj.label}
elif output == "value":
return {"value": numpy.int32(obj.value)}
# ----------------------------------------------------------
class DifferentFrequencies(View):
def index(self, root_folder, parameters):
Entry = namedtuple("Entry", ["a", "b"])
return [
Entry(1, 10),
Entry(1, 20),
Entry(1, 30),
Entry(1, 40),
Entry(2, 50),
Entry(2, 60),
Entry(2, 70),
Entry(2, 80),
]
def get(self, output, index):
obj = self.objs[index]
if output == "a":
return {"value": numpy.int32(obj.a)}
elif output == "b":
return {"value": numpy.int32(obj.b)}
beat/core/test/prefix/databases/integers_db_invalid_env/2.json 0 → 100644
View file @ f048abd7
{
"schema_version": 2,
"environment": {
"name": "Does not exist",
"version": "1.4.0"
},
"root_folder": "/tmp/path/not/set",
"protocols": [
{
"name": "double",
"template": "double/1",
"views": {
"double": {
"view": "Double"
}
}
},
{
"name": "triple",
"template": "triple/1",
"views": {
"triple": {
"view": "Triple"
}
}
},
{
"name": "two_sets",
"template": "two_sets/1",
"views": {
"double": {
"view": "Double"
},
"triple": {
"view": "Triple"
}
}
},
{
"name": "labelled",
"template": "labelled/1",
"views": {
"labelled": {
"view": "Labelled"
}
}
},
{
"name": "different_frequencies",
"template": "different_frequencies/1",
"views": {
"double" : {
"view": "DifferentFrequencies"
}
}
}
]
}
beat/core/test/prefix/databases/integers_db_invalid_env/2.py 0 → 100644
View file @ f048abd7
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
###################################################################################
# #
# Copyright (c) 2019 Idiap Research Institute, http://www.idiap.ch/ #
# Contact: beat.support@idiap.ch #
# #
# Redistribution and use in source and binary forms, with or without #
# modification, are permitted provided that the following conditions are met: #
# #
# 1. Redistributions of source code must retain the above copyright notice, this #
# list of conditions and the following disclaimer. #
# #
# 2. Redistributions in binary form must reproduce the above copyright notice, #
# this list of conditions and the following disclaimer in the documentation #
# and/or other materials provided with the distribution. #
# #
# 3. Neither the name of the copyright holder nor the names of its contributors #
# may be used to endorse or promote products derived from this software without #
# specific prior written permission. #
# #
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND #
# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED #
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE #
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE #
# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL #
# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR #
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER #
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, #
# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE #
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. #
# #
###################################################################################
import numpy
from collections import namedtuple
from beat.backend.python.database import View
class Double(View):
def index(self, root_folder, parameters):
Entry = namedtuple("Entry", ["a", "b", "sum"])
return [
Entry(1, 10, 11),
Entry(2, 20, 22),
Entry(3, 30, 33),
Entry(4, 40, 44),
Entry(5, 50, 55),
Entry(6, 60, 66),
Entry(7, 70, 77),
Entry(8, 80, 88),
Entry(9, 90, 99),
]
def get(self, output, index):
obj = self.objs[index]
if output == "a":
return {"value": numpy.int32(obj.a)}
elif output == "b":
return {"value": numpy.int32(obj.b)}
elif output == "sum":
return {"value": numpy.int32(obj.sum)}
elif output == "class":
return {"value": numpy.int32(obj.cls)}
# ----------------------------------------------------------
class Triple(View):
def index(self, root_folder, parameters):
Entry = namedtuple("Entry", ["a", "b", "c", "sum"])
return [
Entry(1, 10, 100, 111),
Entry(2, 20, 200, 222),
Entry(3, 30, 300, 333),
Entry(4, 40, 400, 444),
Entry(5, 50, 500, 555),
Entry(6, 60, 600, 666),
Entry(7, 70, 700, 777),
Entry(8, 80, 800, 888),
Entry(9, 90, 900, 999),
]
def get(self, output, index):
obj = self.objs[index]
if output == "a":
return {"value": numpy.int32(obj.a)}
elif output == "b":
return {"value": numpy.int32(obj.b)}
elif output == "c":
return {"value": numpy.int32(obj.c)}
elif output == "sum":
return {"value": numpy.int32(obj.sum)}
# ----------------------------------------------------------
class Labelled(View):
def index(self, root_folder, parameters):
Entry = namedtuple("Entry", ["label", "value"])
return [
Entry("A", 1),
Entry("A", 2),
Entry("A", 3),
Entry("A", 4),
Entry("A", 5),
Entry("B", 10),
Entry("B", 20),
Entry("B", 30),
Entry("B", 40),
Entry("B", 50),
Entry("C", 100),
Entry("C", 200),
Entry("C", 300),
Entry("C", 400),
Entry("C", 500),
]
def get(self, output, index):
obj = self.objs[index]
if output == "label":
return {"value": obj.label}
elif output == "value":
return {"value": numpy.int32(obj.value)}
# ----------------------------------------------------------
class DifferentFrequencies(View):
def index(self, root_folder, parameters):
Entry = namedtuple("Entry", ["a", "b"])
return [
Entry(1, 10),
Entry(1, 20),
Entry(1, 30),
Entry(1, 40),
Entry(2, 50),
Entry(2, 60),
Entry(2, 70),
Entry(2, 80),
]
def get(self, output, index):
obj = self.objs[index]
if output == "a":
return {"value": numpy.int32(obj.a)}
elif output == "b":
return {"value": numpy.int32(obj.b)}
beat/core/test/prefix/databases/simple_env/1.json 0 → 100644
View file @ f048abd7
{
"root_folder": "/tmp/foo/bar",
"environment": {
"name": "Example databases",
"version": "1.4.0"
},
"protocols": [
{
"name": "protocol",
"template": "test_integers",
"sets": [
{
"name": "set",
"template": "set",
"view": "View",
"outputs": {
"out": "user/single_integer/1"
}
},
{
"name": "set2",
"template": "set",
"view": "View2",
"outputs": {
"out": "user/single_integer/1"
}
}
]
},
{
"name": "protocol2",
"template": "test_integers",
"sets": [
{
"name": "set",
"template": "set",
"view": "LargeView",
"outputs": {
"out": "user/single_integer/1"
}
},
{
"name": "set2",
"template": "set",
"view": "View2",
"outputs": {
"out": "user/single_integer/1"
}
}
]
}
]
}