protocoltemplates.py 4.33 KB
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#!/usr/bin/env python
# vim: set fileencoding=utf-8 :

###################################################################################
#                                                                                 #
# Copyright (c) 2019 Idiap Research Institute, http://www.idiap.ch/               #
# Contact: beat.support@idiap.ch                                                  #
#                                                                                 #
# Redistribution and use in source and binary forms, with or without              #
# modification, are permitted provided that the following conditions are met:     #
#                                                                                 #
# 1. Redistributions of source code must retain the above copyright notice, this  #
# list of conditions and the following disclaimer.                                #
#                                                                                 #
# 2. Redistributions in binary form must reproduce the above copyright notice,    #
# this list of conditions and the following disclaimer in the documentation       #
# and/or other materials provided with the distribution.                          #
#                                                                                 #
# 3. Neither the name of the copyright holder nor the names of its contributors   #
# may be used to endorse or promote products derived from this software without   #
# specific prior written permission.                                              #
#                                                                                 #
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND #
# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED   #
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE          #
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE    #
# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL      #
# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR      #
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER      #
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,   #
# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE   #
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.            #
#                                                                                 #
###################################################################################


import click
import logging

from . import common
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from . import commands

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from .decorators import raise_on_error
from .click_helper import AliasedGroup


logger = logging.getLogger(__name__)


# ----------------------------------------------------------


@click.group(cls=AliasedGroup)
@click.pass_context
def protocoltemplates(ctx):
    """Protocol template commands"""

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    ctx.meta["asset_type"] = "protocoltemplate"
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protocoltemplates.command(name="list")(commands.command("list"))
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protocoltemplates.command(name="path")(commands.command("path"))
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@protocoltemplates.command()
@click.argument("name", nargs=1)
@click.pass_context
@raise_on_error
def edit(ctx, name):
    """Edit local database file

  Example:
    $ beat databases edit xxx
  """
    return common.edit_local_file(
        ctx.meta["config"].path, ctx.meta["config"].editor, "protocoltemplate", name
    )


@protocoltemplates.command()
@click.argument("names", nargs=-1)
@click.pass_context
@raise_on_error
def check(ctx, names):
    """Checks a local database for validity.

    $ beat databases check [<name>]...

    <name>:
        Database name formatted as "<database>/<version>"
    """
    return common.check(ctx.meta["config"].path, "protocoltemplate", names)


@protocoltemplates.command()
@click.argument("names", nargs=-1)
@click.pass_context
@raise_on_error
def version(ctx, names):
    """Creates a new version of an existing protocolt emplate.

    $ beat databases version [<name>]...

    <name>:
        Protocol template name formatted as "<name>/<version>"

    """
    configuration = ctx.meta["config"]
    if len(names) < 1:
        raise click.ClickException("Requires at least one database name")
    return common.new_version(configuration.path, "protocoltemplate", names[0])